BAC Information

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BAC

Clone NameB6Ng01-026O13
Chromosome13 (Build37)
Map Location 26,388,761 - 26,512,127
singlet/doubletdoublet
Overlap genenone
Upstream geneTpi-rs8, LOC214973, LOC666221
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026O13.bB6Ng01-026O13.g
ACCDH857801DH857802
length9991,034
definitionDH857801|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O13, 5' end.DH857802|Mus musculus domesticus DNA, BAC clone: B6Ng01-026O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,511,111 - 26,512,127)(26,388,761 - 26,389,758)
sequence
gaattcatctacattaaaaaacagaaaattaatataacaaaaagttaatg
atgctgttttattaagtagagcatcaactaatctaattaaaagattagca
gatggtgatggagagagggtgagaaagaagtggaaaaactgccaatcaag
taagtataaatttttatggaatgacaaccatgggatttaaagacacttta
ggaaacaagcaagagccaattttttgaattgtttataaatatgtgaaaac
tatgttaagatggacacatgtccctggaattataaccagagaatttctgc
tgaacatctctgtggaaggaaagaaaatttgtcaaaagttagcttcttag
ccatctgagccaaaatgacttaattctaaagtcaatctccaaaactatta
ggcataaataactctggtgtcatttaagctctttcagaaatcaagaagta
aaactgtataatgtttttattgaagctgaatgtgtgagctctggcttcac
atgaagacattgtctctaagtataaggtgagtagtggttggaaaagacat
ctaatatcaacttctggtcacctcacatatatgggtgtatacccccatat
acccacacactaagttcaatgtttatttccaccaaatttatttccttatt
gtgtgactatgagaagtgtctgtctgttaatttgactatatgaagtcctt
cttattagaaaatgtgcttctcctcctaagtctatggtgcatttaaactg
aacaatcttttgctgcagtccccttatgggtgagggtcaaggctttgatg
aaccatgaagtctggtctaagtcatagaatcatctttcattcttcactgc
cttcaacccatacatgaagcacaccaaagtttttgttgtgctgtaataga
taatttatttattagatctcaatgttgtccctttcctcgttcccttcaaa
ccttcctatccatcccccctcctctgctgctactacccactccacttcc
gaattcatctggaatctgctaaaacccaagaatctggccccctttttggt
gggtctagttgactgaatcacttgaggtggaagaagacacacccaaagcc
tggaccatattctggtggcagtatacataaaaggaagctttcgccttttt
ccatcttggcatcactatctctggaaagttcatccattctgctgctgaga
cactctgcccttgggattagaacacacttttcagtattccaagatatatg
gaatagcagctgaagatgtccatcttaatgcactaaacaaatactgaatt
cttggcctttattttaagatacagccattgtttgactaactagaccgtag
cctataagccatttaaatagatctaaattcattgcactggttcagttcct
ttatagaaccctagccaacagaatctaggacctatggtatatgcatgact
gcacacatactcacacacacatgggcacacttaaaaattaaaataaaatg
tttgttaaaaataatatatttcttttacttaataaaagagatgttctagt
tcctgagattatataagcagaaaagtttaaagatataacaaaaaaataat
tcaaatgtcttgtatttctattgataggcatatttgatgtctggtgttag
tcactcattgttaaattgatactgcagcatctcacaattctttacatgtt
atatttccattgcaataataacatgtaaattatcccataagtcttcacag
ttctaaactatgtggataagcagaggctttaacctaaactttgacattaa
aatggagtctcccttcaaatatttgccagggtaggagataaaaaaaataa
aatgttttttttgtaaatttaatttgcatagttgtgcaaatatgcctact
tgtagagtatttgagcattgtttcttattattattattacatgttgatac
cttaaagttccttattttttggagataggcttcatgtactggtctgccat
cacacttgcttaggaataaggtttccttattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26511111_26512127
seq2: B6Ng01-026O13.b_45_1043 (reverse)

seq1  GGAAGTGGGAGTGGGTAGGTGAGTGAGCAGAGGGAGGGGGGATGGGATAG  50
      |||||| |||||||||||  |    |||||| ||||||||||| ||||||
seq2  GGAAGT-GGAGTGGGTAGTAG---CAGCAGA-GGAGGGGGGAT-GGATAG  44

seq1  GGAGGTTTTGGAGGGGAAACGAGGAAAGGGGACAACATTTGAGATCTAAA  100
      | ||||||  || ||| |||||||||| ||||||||| ||||||||| ||
seq2  GAAGGTTT--GAAGGG-AACGAGGAAA-GGGACAACA-TTGAGATCT-AA  88

seq1  TAAATAAAATATCTAATTAACAGCAACAACAAAAAACTTTGGTGTGCTTC  150
      |||||||| ||||||  | ||||| ||||| |||||||||||||||||||
seq2  TAAATAAATTATCTA--TTACAGC-ACAAC-AAAAACTTTGGTGTGCTTC  134

seq1  ATGTATGGGTTGAAGGCAGTGAAGAATTGAAAGATGATTCTATGACTTAG  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGTATGGGTTGAAGGCAGTGAAGAA-TGAAAGATGATTCTATGACTTAG  183

seq1  ACCAGACTTCATGGTTCATCAAAGCCTTGACCCTCACCCATAAGGGGACC  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACCAGACTTCATGGTTCATCAAAGCCTTGACCCTCACCCATAAGGGGA-C  232

seq1  TGCAGCAAAAGATTGTTCAGTTTAAATGCACCATAGACTTAGGAGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAAAGATTGTTCAGTTTAAATGCACCATAGACTTAGGAGGAGAA  282

seq1  GCACATTTTCTAATAAGAAGGACTTCATATAGTCAAATTAACAGACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTCTAATAAGAAGGACTTCATATAGTCAAATTAACAGACAGAC  332

seq1  ACTTCTCATAGTCACACAATAAGGAAATAAATTTGGTGGAAATAAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCATAGTCACACAATAAGGAAATAAATTTGGTGGAAATAAACATT  382

seq1  GAACTTAGTGTGTGGGTATATGGGGGTATACACCCATATATGTGAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGTGTGTGGGTATATGGGGGTATACACCCATATATGTGAGGTGA  432

seq1  CCAGAAGTTGATATTAGATGTCTTTTCCAACCACTACTCACCTTATACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTTGATATTAGATGTCTTTTCCAACCACTACTCACCTTATACTT  482

seq1  AGAGACAATGTCTTCATGTGAAGCCAGAGCTCACACATTCAGCTTCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAATGTCTTCATGTGAAGCCAGAGCTCACACATTCAGCTTCAATA  532

seq1  AAAACATTATACAGTTTTACTTCTTGATTTCTGAAAGAGCTTAAATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTATACAGTTTTACTTCTTGATTTCTGAAAGAGCTTAAATGACA  582

seq1  CCAGAGTTATTTATGCCTAATAGTTTTGGAGATTGACTTTAGAATTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTATTTATGCCTAATAGTTTTGGAGATTGACTTTAGAATTAAGT  632

seq1  CATTTTGGCTCAGATGGCTAAGAAGCTAACTTTTGACAAATTTTCTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGCTCAGATGGCTAAGAAGCTAACTTTTGACAAATTTTCTTTCC  682

seq1  TTCCACAGAGATGTTCAGCAGAAATTCTCTGGTTATAATTCCAGGGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGAGATGTTCAGCAGAAATTCTCTGGTTATAATTCCAGGGACAT  732

seq1  GTGTCCATCTTAACATAGTTTTCACATATTTATAAACAATTCAAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATCTTAACATAGTTTTCACATATTTATAAACAATTCAAAAAATT  782

seq1  GGCTCTTGCTTGTTTCCTAAAGTGTCTTTAAATCCCATGGTTGTCATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGCTTGTTTCCTAAAGTGTCTTTAAATCCCATGGTTGTCATTCC  832

seq1  ATAAAAATTTATACTTACTTGATTGGCAGTTTTTCCACTTCTTTCTCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTTATACTTACTTGATTGGCAGTTTTTCCACTTCTTTCTCACC  882

seq1  CTCTCTCCATCACCATCTGCTAATCTTTTAATTAGATTAGTTGATGCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCATCACCATCTGCTAATCTTTTAATTAGATTAGTTGATGCTCT  932

seq1  ACTTAATAAAACAGCATCATTAACTTTTTGTTATATTAATTTTCTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATAAAACAGCATCATTAACTTTTTGTTATATTAATTTTCTGTTTT  982

seq1  TTAATGTAGATGAATTC  1017
      |||||||||||||||||
seq2  TTAATGTAGATGAATTC  999

seq1: chr13_26388761_26389758
seq2: B6Ng01-026O13.g_108_1101

seq1  CCTTTTTGGTGGGTCTAGTTGACTGAATCACTTGAGGTGGAAGAAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGGTGGGTCTAGTTGACTGAATCACTTGAGGTGGAAGAAGACAC  50

seq1  ACCCAAAGCCTGGACCATATTCTGGTGGCAGTATACATAAAAGGAAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGCCTGGACCATATTCTGGTGGCAGTATACATAAAAGGAAGCTT  100

seq1  TCGCCTTTTTCCATCTTGGCATCACTATCTCTGGAAAGTTCATCCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTTTTTCCATCTTGGCATCACTATCTCTGGAAAGTTCATCCATTCT  150

seq1  GCTGCTGAGACACTCTGCCCTTGGGATTAGAACACACTTTTCAGTATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGACACTCTGCCCTTGGGATTAGAACACACTTTTCAGTATTCC  200

seq1  AAGATATATGGAATAGCAGCTGAAGATGTCCATCTTAATGCACTAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATATGGAATAGCAGCTGAAGATGTCCATCTTAATGCACTAAACAA  250

seq1  ATACTGAATTCTTGGCCTTTATTTTAAGATACAGCCATTGTTTGACTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAATTCTTGGCCTTTATTTTAAGATACAGCCATTGTTTGACTAAC  300

seq1  TAGACCGTAGCCTATAAGCCATTTAAATAGATCTAAATTCATTGCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCGTAGCCTATAAGCCATTTAAATAGATCTAAATTCATTGCACTGG  350

seq1  TTCAGTTCCTTTATAGAACCCTAGCCAACAGAATCTAGGACCTATGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCTTTATAGAACCCTAGCCAACAGAATCTAGGACCTATGGTAT  400

seq1  ATGCATGACTGCACACATACTCACACACACATGGGCACACTTAAAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGACTGCACACATACTCACACACACATGGGCACACTTAAAAATTA  450

seq1  AAATAAAATGTTTGTTAAAAATAATATATTTCTTTTACTTAATAAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGTTTGTTAAAAATAATATATTTCTTTTACTTAATAAAAGAG  500

seq1  ATGTTCTAGTTCCTGAGATTATATAAGCAGAAAAGTTTAAAGATATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTAGTTCCTGAGATTATATAAGCAGAAAAGTTTAAAGATATAACA  550

seq1  AAAAAATAATTCAAATGTCTTGTATTTCTATTGATAGGCATATTTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATTCAAATGTCTTGTATTTCTATTGATAGGCATATTTGATGT  600

seq1  CTGGTGTTAGTCACTCATTGTTAAATTGATACTGCAGCATCTCACAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTAGTCACTCATTGTTAAATTGATACTGCAGCATCTCACAATTC  650

seq1  TTTACATGTTATATTTCCATTGCAATAATAACATGTAAATTATCCCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTTATATTTCCATTGCAATAATAACATGTAAATTATCCCATAA  700

seq1  GTCTTCACAGTTCTAAACTATGTGGATAAGCAGAGGCTTTAACCTAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCACAGTTCTAAACTATGTGGATAAGCAGAGGCTTTAACCTAAACT  750

seq1  TTGACATTAAAATGGAGTCT-CCTTCAAATATTTGCCAGGGTAGGAGATA  799
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TTGACATTAAAATGGAGTCTCCCTTCAAATATTTGCCAGGGTAGGAGAT-  799

seq1  AAAAAAAATAAAATGTTTTTTTTTGTAAATTTAATTTGCATAGTTGTGCA  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAAAATG-TTTTTTTTGTAAATTTAATTTGCATAGTTGTGCA  848

seq1  AATTATGCCTACTTGTAGAGTATTTGAGCATTGTTTCTTTATTATTTATT  899
      || |||||||||||||||||||||||||||||||||| |||||| |||||
seq2  AA-TATGCCTACTTGTAGAGTATTTGAGCATTGTTTC-TTATTA-TTATT  895

seq1  ATTTACATGTTGATACCTTAAAGTTCC-TATTTTTT-GAGATAGGCTTCA  947
      | ||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  A-TTACATGTTGATACCTTAAAGTTCCTTATTTTTTGGAGATAGGCTTCA  944

seq1  TGTAACTGGTCTGCCATCACACTTGCTATGTAATAAGGTTTTCTTATTTT  997
      ||| |||||||||||||||||||||||  | |||||||||| ||||||||
seq2  TGT-ACTGGTCTGCCATCACACTTGCTTAGGAATAAGGTTTCCTTATTTT  993

seq1  T  998
      |
seq2  T  994