BAC Information

Click to search

BAC

Clone NameB6Ng01-027G16
Chromosome13 (Build37)
Map Location 40,063,745 - 40,268,246
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027G16.bB6Ng01-027G16.g
ACCDH858165DH858166
length648742
definitionDH858165|Mus musculus domesticus DNA, BAC clone: B6Ng01-027G16, 5' end.DH858166|Mus musculus domesticus DNA, BAC clone: B6Ng01-027G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,063,745 - 40,064,390)(40,267,507 - 40,268,246)
sequence
gaattccagaatgccttgaatactgagtgggttgagtttgcagaatggga
atgtattctatacatagccgcacagtggtcagacaaggggaaggaggcca
aagatctcacctaaggaaatgaagactgtggggaatcggctgtatgtact
gtgtaaagttaaaattccgtatcttcttattaaaccaagaaaagtacagt
gtcacaggccactgagtacagatgttagcgattagcagcctctgttctca
ttgttgtggagtctgctctactctaaaacctgtgttgttttagatctcat
taccatcagagaacttactcagctccatggataagtgttcttcctagctc
ttatatcacttcggccctttgcacagtatgggcatttcatgtttcttaac
taggtaatgggattactgtggtctgaaatgggccctttgggacaacctgt
gtgtagtttcctgtttcctgtcagtatggtttaacctaggccgggatgag
gagggttgtagcaggtttggatatttaaaagcaaacctggtttttgttgc
attgcagtgattgctatcaccatcgaggctgcaccgggctggctgcattc
tgctttccccaagaaatcctgcaaagcttccttttgttaatggcgtct
gaattctcgactttcaccagaatgggttctgacttaactaatgataattt
aatgccactgatacttttgtctagttttaggatactgagtggaagatgag
aaacaattattcttggaccatttttcaccataacctctttgcttctcagc
ttccctctgacaatgtggctacattccccagatgaaccacaccatgctat
gaacgtgacttttagagtgatgccgttgtcccgtgctctcctcgaagggg
acggctggcaagctggagaggaggaacaccatcacatttggcatgcacat
acagtgtgcaccaagaggaagactttcttgagctttgctttaaaataacc
tggttattattttttgctttgctatgagcctagagactaatgtaagcctc
acatttgaagacgccagagggactgctctctctcgttgtgaagagatcaa
tacagaaccagaacacacaattttcttccagtacatgcattctctattgc
ttacttttattcttcttggaagctccaacgcttatgattagtggttaata
tctcccatggggctcctttctcatctctcggagctgtgatacagtgtgca
gtttctgccattgacgtgtttgctcagaaattgaataatgggaaaacata
ctcaacatctggtaattcatttcaaattaaaattttattaaacttgggct
tgatgacttttctggctatttactggtaaaagaaggaaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40063745_40064390
seq2: B6Ng01-027G16.b_33_680

seq1  GAATTCCAGAATGCCTTGAATACTGAGTGGG-GGAGTTTGCAGAATGGGA  49
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCCAGAATGCCTTGAATACTGAGTGGGTTGAGTTTGCAGAATGGGA  50

seq1  ATGTATTCTATACATAGCCGCACAGTGGTCAGACAAGGGGAAGGAGGCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCTATACATAGCCGCACAGTGGTCAGACAAGGGGAAGGAGGCCA  100

seq1  AAGATCTCACCTAAGGAAATGAAGACTGTGGGGAATCGGCTGTATGTACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCACCTAAGGAAATGAAGACTGTGGGGAATCGGCTGTATGTACT  150

seq1  GTGTAAAGTTAAAATTCCGTATCTTCTTATTAAACCAAGAAAAGTACAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGTTAAAATTCCGTATCTTCTTATTAAACCAAGAAAAGTACAGT  200

seq1  GTCACAGGCCACTGAGTACAGATGTTAGCGATTAGCAGCCTCTGTTCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGCCACTGAGTACAGATGTTAGCGATTAGCAGCCTCTGTTCTCA  250

seq1  TTGTTGTGGAGTCTGCTCTACTCTAAAACCTGTGTTGTTTTAGATCTCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGGAGTCTGCTCTACTCTAAAACCTGTGTTGTTTTAGATCTCAT  300

seq1  TACCATCAGAGAACTTACTCAGCTCCATGGATAAGTGTTCTTCCTAGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAGAGAACTTACTCAGCTCCATGGATAAGTGTTCTTCCTAGCTC  350

seq1  TTATATCACTTCGGCCCTTTGCACAGTATGGGCATTTCATGTTTCTTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCACTTCGGCCCTTTGCACAGTATGGGCATTTCATGTTTCTTAAC  400

seq1  TAGGTAATGGGATTACTGTGGTCTGAAATGGGCCCTTTGGGACAACCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATGGGATTACTGTGGTCTGAAATGGGCCCTTTGGGACAACCTGT  450

seq1  GTGTAGTTTCCTGTTTCCTGTCAGTATGGTTTAACCTAGGCCGGGATGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTTCCTGTTTCCTGTCAGTATGGTTTAACCTAGGCCGGGATGAG  500

seq1  GAGGGTTGTAGCAGGTTTGGATATTTAAAAGCAAACCTGG-TTTTGTTGC  548
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGGGTTGTAGCAGGTTTGGATATTTAAAAGCAAACCTGGTTTTTGTTGC  550

seq1  ATTGCAGTGATTGCTATCACCATCGAGGCTGCACCGGGCTGGCTGCATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTGATTGCTATCACCATCGAGGCTGCACCGGGCTGGCTGCATTC  600

seq1  TGCTTTCCCCAAGAAATCCTGCAAAGCTTCCTTTTGTCAATGGCGTCT  646
      ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCTTTCCCCAAGAAATCCTGCAAAGCTTCCTTTTGTTAATGGCGTCT  648

seq1: chr13_40267507_40268246
seq2: B6Ng01-027G16.g_68_809 (reverse)

seq1  ACGTTTCCTTCTTTTACATGTAAATAGCCAG-AAAGTCATCAAGCCAGAG  49
      |||||||||||||||||  |||||||||||| ||||||||||||||  ||
seq2  ACGTTTCCTTCTTTTACCAGTAAATAGCCAGAAAAGTCATCAAGCCCAAG  50

seq1  TTTAATAAACTTTTAATTTGAAATGAATTACCAGATGTTGAGTATGTTTA  99
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  TTTAATAAAATTTTAATTTGAAATGAATTACCAGATGTTGAGTATGTTTT  100

seq1  CCCATTATTCAATTTCTGAGC-AACACGTCAATGGCAGAAACTGCACACT  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCATTATTCAATTTCTGAGCAAACACGTCAATGGCAGAAACTGCACACT  150

seq1  GTATCACAGCTCCGAGAGATGAGAAAGGAGCCCCATGGGAGATATTAACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACAGCTCCGAGAGATGAGAAAGGAGCCCCATGGGAGATATTAACC  200

seq1  ACTAATCATAAGCGTTGGAGCTTCCAAGAAGAATAAAAGTAAGCAATAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCATAAGCGTTGGAGCTTCCAAGAAGAATAAAAGTAAGCAATAGA  250

seq1  GAATGCATGTACTGGAAGAAAATTGTGTGTTCTGGTTCTGTATTGATCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATGTACTGGAAGAAAATTGTGTGTTCTGGTTCTGTATTGATCTC  300

seq1  TTCACAACGAGAGAGAGCAGTCCCTCTGGCGTCTTCAAATGTGAGGCTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACGAGAGAGAGCAGTCCCTCTGGCGTCTTCAAATGTGAGGCTTA  350

seq1  CATTAGTCTCTAGGCTCATAGCAAAGCAAAAAATAATAACCAGGTTATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTCTCTAGGCTCATAGCAAAGCAAAAAATAATAACCAGGTTATTT  400

seq1  TAAAGCAAAGCTCAAGAAAGTCTTCCTCTTGGTGCACACTGTATGTGCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAAAGCTCAAGAAAGTCTTCCTCTTGGTGCACACTGTATGTGCAT  450

seq1  GCCAAATGTGATGGTGTTCCTCCTCTCCAGCTTGCCAGCCGTCCCCTTCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGTGATGGTGTTCCTCCTCTCCAGCTTGCCAGCCGTCCCCTTCG  500

seq1  AGGAGAGCACGGGACAACGGCATCACTCTAAAAGTCACGTTCATAGCATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCACGGGACAACGGCATCACTCTAAAAGTCACGTTCATAGCATG  550

seq1  GTGTGGTTCATCTGGGGAATGTAGCCACATTGTCAGAGGGAAGCTGAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTCATCTGGGGAATGTAGCCACATTGTCAGAGGGAAGCTGAGAA  600

seq1  GCAAAGAGGTTATGGTGAAAAATGGTCCAAGAATAATTGTTTCTCATCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGTTATGGTGAAAAATGGTCCAAGAATAATTGTTTCTCATCTT  650

seq1  CCACTCAGTATCCTAAAACTAGACAAAAGTATCAGTGGCATTAAATTATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGTATCCTAAAACTAGACAAAAGTATCAGTGGCATTAAATTATC  700

seq1  ATTAGTTAAGTCAGAACCCATTCTGGTGAAAGTCGAGAATTC  740
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTAAGTCAGAACCCATTCTGGTGAAAGTCGAGAATTC  742