BAC Information

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BAC

Clone NameB6Ng01-028M18
Chromosome13 (Build37)
Map Location 60,893,613 - 61,040,379
singlet/doubletdoublet
Overlap gene2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa
Upstream geneZcchc6, LOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665
Downstream geneCtsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028M18.bB6Ng01-028M18.g
ACCDH859181DH859182
length996922
definitionDH859181|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M18, 5' end.DH859182|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,039,741 - 61,040,379)(60,893,613 - 60,894,166)
sequence
gaattcaatgatcttaattcacattaatatgatagattaaaattgtttgc
attctctgtaaagtgatggctccttaatctgttagacatctctgcacctg
tgcaggagaactctttctacttcattttatgagattctttttttctactt
ttttttttggtttttcgaattctatgagattctaattacatcatttaccc
ctctcctttcctccccacaaactctcccatatacctcttctttctctctc
ccaaattaactgcctcctttttaaattaattgttgttttatgtattccaa
agtatgtaaaagcaaggtgctaaagtcagtataatggtaattgtgtgtat
gttttcagatctgagtttttgttatcaaatagccaatttttgagttcttt
tctggggaaaaatatttttcttatagcattcctgagttgcctaactttta
ctatatattttaataagtttacaatcattaacttgagaataatgaatagt
atttataattaaattattatcaaatattacaaaacatagcagaattcttg
ctgtttataaagatggtgtcttaagtctctcaaggctctcatcaggccat
ctcttggagcctcaccccaagtccctatagcttttatgcaatgccccatg
cacccctttttagccatctcaacatctaattacccactagaatcaagact
cttaatgtttaattagccgatccgatttatgtaccaataaagacaaaatt
tacaagatgccaatacagtaacttcagagccaaatgataatcataaagct
ttaacataattattctaaccttttgataacaccacgtcagcctccattct
ggttctccctttcctcctcagactccccccccccccacccctgtatcctc
aactcctccctctgcctcccttttcctgtccaatcacagcctcccactgc
cctatatgattggacggggaaaactctgcaatagatcactcaaatt
gaattccctaactatctcaagcataatcaatttctaatcaacaaccttat
aagaagtgtactgactggttttgtgagtcaatttgacacaagctggtgtt
atcacagagaacaccatccatgagatccagcagctgtaaggcatttctca
gttagtgatcaagagtggaagggttggaaatccaggacacaatgagaaga
caaaacctaaggataataggtatagaagagagcaaagattaccaacttaa
atagccagtaaatatcttcaacaaaattatagaagaaaactgccctaaca
taaagaaagagatgtccatgaatatacaagaagcctacagaattccaaat
agactggactagaagagaaattcctcctgtcacataataatcaaaacacc
aaatgcacaaaacaaagaaagaatattaaaagcagtaacggaaaaaagtc
aagtaacatattaaggcagacctatcagaattacaccagacttctcatca
gattctatgaaagccagaagatcctgggggagatgtcatacagccactaa
gagaacacaaatgccagcccaggctaccataccgagcaaaactctcaatt
accatagacggagaaaccaagatattccatgacaaaacaaatttatccaa
tatctttcctcaaatccagcccaacaaaggataatagatagaaaactcca
gcacaaggatggaaactacaccctagaaaaagcaagaaagtaatcttttt
caacaaaaccaaaagaggatagccacacaaacataataccacctctaaca
acaaaaataccaggaagtaataattacttttctttaatatctcttaatat
caatggactcaattccccaataaaaagacatagactgacagactggctac
acaaacaggacccagcattttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_61039741_61040379
seq2: B6Ng01-028M18.b_45_683 (reverse)

seq1  GCATAAAAGCTATAGGGACTTGGGGTGAGGCTCCAAGAGATGGCCTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAAGCTATAGGGACTTGGGGTGAGGCTCCAAGAGATGGCCTGATG  50

seq1  AGAGCCTTGAGAGACTTAAGACACCATCTTTATAAACAGCAAGAATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTGAGAGACTTAAGACACCATCTTTATAAACAGCAAGAATTCTG  100

seq1  CTATGTTTTGTAATATTTGATAATAATTTAATTATAAATACTATTCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTTGTAATATTTGATAATAATTTAATTATAAATACTATTCATTA  150

seq1  TTCTCAAGTTAATGATTGTAAACTTATTAAAATATATAGTAAAAGTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGTTAATGATTGTAAACTTATTAAAATATATAGTAAAAGTTAGG  200

seq1  CAACTCAGGAATGCTATAAGAAAAATATTTTTCCCCAGAAAAGAACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGGAATGCTATAAGAAAAATATTTTTCCCCAGAAAAGAACTCAA  250

seq1  AAATTGGCTATTTGATAACAAAAACTCAGATCTGAAAACATACACACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCTATTTGATAACAAAAACTCAGATCTGAAAACATACACACAAT  300

seq1  TACCATTATACTGACTTTAGCACCTTGCTTTTACATACTTTGGAATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTATACTGACTTTAGCACCTTGCTTTTACATACTTTGGAATACAT  350

seq1  AAAACAACAATTAATTTAAAAAGGAGGCAGTTAATTTGGGAGAGAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAATTAATTTAAAAAGGAGGCAGTTAATTTGGGAGAGAGAAAG  400

seq1  AAGAGGTATATGGGAGAGTTTGTGGGGAGGAAAGGAGAGGGGTAAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTATATGGGAGAGTTTGTGGGGAGGAAAGGAGAGGGGTAAATGAT  450

seq1  GTAATTAGAATCTCATAGAATTCGAAAAACCAAAAAAAAAAGTAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGAATCTCATAGAATTCGAAAAACCAAAAAAAAAAGTAGAAAAA  500

seq1  AAGAATCTCATAAAATGAAGTAGAAAGAGTTCTCCTGCACAGGTGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTCATAAAATGAAGTAGAAAGAGTTCTCCTGCACAGGTGCAGAG  550

seq1  ATGTCTAACAGATTAAGGAGCCATCACTTTACAGAGAATGCAAACAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAACAGATTAAGGAGCCATCACTTTACAGAGAATGCAAACAATTT  600

seq1  TAATCTATCATATTAATGTGAATTAAGATCATTGAATTC  639
      |||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATCATATTAATGTGAATTAAGATCATTGAATTC  639

seq1: chr13_60893613_60894166
seq2: B6Ng01-028M18.g_66_619

seq1  GAATTCCCTAACTATCTCAAGCATAATCAATTTCTAATCAACAACCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAACTATCTCAAGCATAATCAATTTCTAATCAACAACCTTAT  50

seq1  AAGAAGTGTACTGACTGGTTTTGTGAGTCAATTTGACACAAGCTGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGTACTGACTGGTTTTGTGAGTCAATTTGACACAAGCTGGTGTT  100

seq1  ATCACAGAGAACACCATCCATGAGATCCAGCAGCTGTAAGGCATTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAGAACACCATCCATGAGATCCAGCAGCTGTAAGGCATTTCTCA  150

seq1  GTTAGTGATCAAGAGTGGAAGGGTTGGAAATCCAGGACACAATGAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGATCAAGAGTGGAAGGGTTGGAAATCCAGGACACAATGAGAAGA  200

seq1  CAAAACCTAAGGATAATAGGTATAGAAGAGAGCAAAGATTACCAACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTAAGGATAATAGGTATAGAAGAGAGCAAAGATTACCAACTTAA  250

seq1  ATAGCCAGTAAATATCTTCAACAAAATTATAGAAGAAAACTGCCCTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGTAAATATCTTCAACAAAATTATAGAAGAAAACTGCCCTAACA  300

seq1  TAAAGAAAGAGATGTCCATGAATATACAAGAAGCCTACAGAATTCCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGAGATGTCCATGAATATACAAGAAGCCTACAGAATTCCAAAT  350

seq1  AGACTGGACTAGAAGAGAAATTCCTCCTGTCACATAATAATCAAAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGACTAGAAGAGAAATTCCTCCTGTCACATAATAATCAAAACACC  400

seq1  AAATGCACAAAACAAAGAAAGAATATTAAAAGCAGTAACGGAAAAAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACAAAACAAAGAAAGAATATTAAAAGCAGTAACGGAAAAAAGTC  450

seq1  AAGTAACATATTAAGGCAGACCTATCAGAATTACACCAGACTTCTCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACATATTAAGGCAGACCTATCAGAATTACACCAGACTTCTCATCA  500

seq1  GATTCTATGAAAGCCAGAAGATCCTGGGGGAGATGTCATACAGCCACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATGAAAGCCAGAAGATCCTGGGGGAGATGTCATACAGCCACTAA  550

seq1  GAGA  554
      ||||
seq2  GAGA  554