BAC Information

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BAC

Clone NameB6Ng01-029D02
Chromosome13 (Build37)
Map Location 40,986,729 - 41,130,995
singlet/doubletdoublet
Overlap geneGcnt2, Pak1ip1, Tmem14c, Mak
Upstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105
Downstream geneEG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029D02.bB6Ng01-029D02.g
ACCDH859461DH859462
length610508
definitionDH859461|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D02, 5' end.DH859462|Mus musculus domesticus DNA, BAC clone: B6Ng01-029D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,130,386 - 41,130,995)(40,986,729 - 40,987,242)
sequence
gaattccattataatactgaaaataaaaggaaaacaaacaaacaaaaaca
tgggtttttccccctgaaatctagagtaaagttctagatgactcaaggta
tcctataaggtataaaatgcagtttaatcagagtgccatttttttttgtt
aaaatatttaaatatataagtagaagggttttttttgtttgtttgttttt
ggtttctctttatagccataggtgtcctggaatttctttgtagaccagtt
tagcccaaaacttacagtgatctacctgcctgtgccacccaagttctgcc
tttataatatatgcctgcctttataaatagaaaaactttaagacccaaaa
aatacccatttaagatagttgccatggctgcactaaccaaataattagac
tattcataagccattctttattgaacaacacttatggacactgtgtgcac
tacagtgtagcttcccaatctccctccctcaccttcccttttgtgtgtat
ggtgtgtgtccatgtgtgtgcagatgcctgtgtgtgcacatgtggagctc
agggccaacttagggtgccagcttctctctctctctctctctctctctct
ctctctctct
aaggacagctagcttagccatcagggtcctgcatcaaggaaaggatggag
agaggcagatatgagacagggttttggtttatgttaaatatatctgatta
cttcagccaggggtggtcagtttggtccatgtcaaatcagtaccaaaaag
tcaaggacagaggaacccccctttctcctcagccctcttcctctttccta
ccagtcaatagacaagactagagataaagaatgatgcagtatagggtggg
agtggagagatgactcagcagttaagagcactgactgctcttctgaaagt
cctgagttcaattcccagcaaccacatggtgggctcacaaccatctgtaa
tgggatccgatgccctcctccagtgtgtctgaagacatctatctgccatc
ccagagtagggatgctggagcaggagggttccatgagccattgaggctat
tagatagaccccatcattaaaataaaataactaactcttggttggggggt
gtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41130386_41130995
seq2: B6Ng01-029D02.b_43_652 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTGGCACCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTGGCACCCTA  50

seq1  AGTTGGCCCTGAGCTCCACATGTGCACACACAGGCATCTGCACACACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCCTGAGCTCCACATGTGCACACACAGGCATCTGCACACACATG  100

seq1  GACACACACCATACACACAAAAGGGAAGGTGAGGGAGGGAGATTGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACCATACACACAAAAGGGAAGGTGAGGGAGGGAGATTGGGAAG  150

seq1  CTACACTGTAGTGCACACAGTGTCCATAAGTGTTGTTCAATAAAGAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGTAGTGCACACAGTGTCCATAAGTGTTGTTCAATAAAGAATGG  200

seq1  CTTATGAATAGTCTAATTATTTGGTTAGTGCAGCCATGGCAACTATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAATAGTCTAATTATTTGGTTAGTGCAGCCATGGCAACTATCTTA  250

seq1  AATGGGTATTTTTTGGGTCTTAAAGTTTTTCTATTTATAAAGGCAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTATTTTTTGGGTCTTAAAGTTTTTCTATTTATAAAGGCAGGCAT  300

seq1  ATATTATAAAGGCAGAACTTGGGTGGCACAGGCAGGTAGATCACTGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAAAGGCAGAACTTGGGTGGCACAGGCAGGTAGATCACTGTAAG  350

seq1  TTTTGGGCTAAACTGGTCTACAAAGAAATTCCAGGACACCTATGGCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGCTAAACTGGTCTACAAAGAAATTCCAGGACACCTATGGCTATA  400

seq1  AAGAGAAACCAAAAACAAACAAACAAAAAAAACCCTTCTACTTATATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACCAAAAACAAACAAACAAAAAAAACCCTTCTACTTATATATT  450

seq1  TAAATATTTTAACAAAAAAAAATGGCACTCTGATTAAACTGCATTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTAACAAAAAAAAATGGCACTCTGATTAAACTGCATTTTATA  500

seq1  CCTTATAGGATACCTTGAGTCATCTAGAACTTTACTCTAGATTTCAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAGGATACCTTGAGTCATCTAGAACTTTACTCTAGATTTCAGGGG  550

seq1  GAAAAACCCATGTTTTTGTTTGTTTGTTTTCCTTTTATTTTCAGTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCCATGTTTTTGTTTGTTTGTTTTCCTTTTATTTTCAGTATTAT  600

seq1  AATGGAATTC  610
      ||||||||||
seq2  AATGGAATTC  610

seq1: chr13_40986729_40987242
seq2: B6Ng01-029D02.g_67_580

seq1  GAATTCAAGGACAGCTAGCTTAGCCATCAGGGTCCTGCATCAAGGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAGCTAGCTTAGCCATCAGGGTCCTGCATCAAGGAAAGG  50

seq1  ATGGAGAGAGGCAGATATGAGACAGGGTTTTGGTTTATGTTAAATATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAGGCAGATATGAGACAGGGTTTTGGTTTATGTTAAATATATC  100

seq1  TGATTACTTCAGCCAGGGGTGGTCAGTTTGGTCCATGTCAAATCAGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTTCAGCCAGGGGTGGTCAGTTTGGTCCATGTCAAATCAGTACC  150

seq1  AAAAAGTCAAGGACAGAGGAACCCCCCTTTCTCCTCAGCCCTCTTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCAAGGACAGAGGAACCCCCCTTTCTCCTCAGCCCTCTTCCTCT  200

seq1  TTCCTACCAGTCAATAGACAAGACTAGAGATAAAGAATGATGCAGTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCAGTCAATAGACAAGACTAGAGATAAAGAATGATGCAGTATAG  250

seq1  GGTGGGAGTGGAGAGATGACTCAGCAGTTAAGAGCACTGACTGCTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGTGGAGAGATGACTCAGCAGTTAAGAGCACTGACTGCTCTTCT  300

seq1  GAAAGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGGCTCACAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGGCTCACAACCAT  350

seq1  CTGTAATGGGATCCGATGCCCTCCTCCAGTGTGTCTGAAGACATCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGGGATCCGATGCCCTCCTCCAGTGTGTCTGAAGACATCTATCT  400

seq1  GCCATCCCAGAGTAGGGATGCTGGAGCAGGAGGGTTCCATGAGCCATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCAGAGTAGGGATGCTGGAGCAGGAGGGTTCCATGAGCCATTGA  450

seq1  GGCTATTAGATAGACCCCATCATTAAAATAAAATAACTAACTCTTGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTAGATAGACCCCATCATTAAAATAAAATAACTAACTCTTGGTTG  500

seq1  GGGGGTGTGGGGGG  514
      ||||||||||||||
seq2  GGGGGTGTGGGGGG  514