BAC Information

Click to search

BAC

Clone NameB6Ng01-029L10
Chromosome13 (Build37)
Map Location 13,788,881 - 13,985,227
singlet/doubletdoublet
Overlap geneLyst, LOC100039831, Gng4, EG665000, EG665008
Upstream geneLOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
Downstream geneLOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1, Mrpl32, Psma2, AW209491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029L10.bB6Ng01-029L10.g
ACCDH859836DH859837
length2371,044
definitionDH859836|Mus musculus domesticus DNA, BAC clone: B6Ng01-029L10, 5' end.DH859837|Mus musculus domesticus DNA, BAC clone: B6Ng01-029L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,984,991 - 13,985,227)(13,788,881 - 13,789,936)
sequence
atcatgaattttggcatggattcagcaatttcagcatgaaccaagacttt
acacctggttttccaattcacacctttatccattacattgatgaattatt
gataaccttaaatctaaaaaaaaaaaaaaatccaaccaaatcaaacaaaa
gaacacacacatacaacacagagagggggcagagggagagcggaagggga
ggaggagagagagagagagagagagagagagagagag
gaattcagatattattgacattttgagaactccagaaaatacatcccaaa
gcaagacctcagtttctcagactgaaatttctgaagaagacatgcatcat
gagcaaccttctgtatataatccatttcaaaaagaaatgttaacctatct
gttggatggcttcaaagtgtgtattgtaagtaaattaatgacttgaaaat
gtgcatttacacaaaaggagtagagatctatatatgtgaactctgggttt
ctaaatttatatttctttgtgctttgtacctgaaacaatttaaattcgtt
tttctgttggggtaaggtcattgttttgttttgaagtaaggattcactat
gtagcctaggttgactttgaactcatatttctcatttctcagtctcatgc
taattgacattgcaggtgtgtgccattatgcctaacggggttttaataat
agagtgatatattttgcttggctaacctgttacaaaatgaagaacctcat
gtagtatcagggaggagtgggattttgatgattgctgtgtttgtaaatga
atagcctgtttttaaagggctttatttataattacatttctgaaatattg
aaaagtttagatcttgctataagcatatccagtaccttcaaaatgatata
gagtatattgatggtgtctggcttcactttctatcatctcacttgagttt
ctttgggtcattcatacttgattatgggggaaaaattgatcaattcactc
tgtcagtaacactaaaggccaatataattctagaataccatgagtcacca
ctgccagtctctggatctaaactggattttagtgtccatctctgatcata
agtaaactctagtttcacttagactaaatcactcaagagagatctaagag
taggagtaattagaaagccattctaaaattgtgtttgagttctgatatat
actgatccagtattaaatcaggtgatttggtccagagaggctactggtag
tctcctttaaacaatcactaggagaactgatgatcaattctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13984991_13985227
seq2: B6Ng01-029L10.b_50_286 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTCCCCTTCCGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTCCCCTTCCGCTC  50

seq1  TCCCTCTGCCCCCTCTCTGTGTTGTATGTGTGTGTTCTTTTGTTTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCCCCCTCTCTGTGTTGTATGTGTGTGTTCTTTTGTTTGATTT  100

seq1  GGTTGGATTTTTTTTTTTTTTTAGATTTAAGGTTATCAATAATTCATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGATTTTTTTTTTTTTTTAGATTTAAGGTTATCAATAATTCATCAA  150

seq1  TGTAATGGATAAAGGTGTGAATTGGAAAACCAGGTGTAAAGTCTTGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGATAAAGGTGTGAATTGGAAAACCAGGTGTAAAGTCTTGGTTC  200

seq1  ATGCTGAAATTGCTGAATCCATGCCAAAATTCATGAT  237
      |||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAATTGCTGAATCCATGCCAAAATTCATGAT  237

seq1: chr13_13788881_13789936
seq2: B6Ng01-029L10.g_66_1109

seq1  GAATTCAGATATTATTGACATTTTGAGAACTCCAGAAAATACATCCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATTATTGACATTTTGAGAACTCCAGAAAATACATCCCAAA  50

seq1  GCAAGACCTCAGTTTCTCAGACTGAAATTTCTGAAGAAGACATGCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCTCAGTTTCTCAGACTGAAATTTCTGAAGAAGACATGCATCAT  100

seq1  GAGCAACCTTCTGTATATAATCCATTTCAAAAAGAAATGTTAACCTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACCTTCTGTATATAATCCATTTCAAAAAGAAATGTTAACCTATCT  150

seq1  GTTGGATGGCTTCAAAGTGTGTATTGTAAGTAAATTAATGACTTGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGGCTTCAAAGTGTGTATTGTAAGTAAATTAATGACTTGAAAAT  200

seq1  GTGCATTTACACAAAAGGAGTAGAGATCTATATATGTGAACTCTGGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTACACAAAAGGAGTAGAGATCTATATATGTGAACTCTGGGTTT  250

seq1  CTAAATTTATATTTCTTTGTGCTTTGTACCTGAAACAATTTAAATTCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTATATTTCTTTGTGCTTTGTACCTGAAACAATTTAAATTCGTT  300

seq1  TTTCTGTTGGGGTAAGGTCATTGTTTTGTTTTGAAGTAAGGATTCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGGGGTAAGGTCATTGTTTTGTTTTGAAGTAAGGATTCACTAT  350

seq1  GTAGCCTAGGTTGACTTTGAACTCATATTTCTCATTTCTCAGTCTCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTAGGTTGACTTTGAACTCATATTTCTCATTTCTCAGTCTCATGC  400

seq1  TAATTGACATTGCAGGTGTGTGCCATTATGCCTAACGGGGTTTTAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGACATTGCAGGTGTGTGCCATTATGCCTAACGGGGTTTTAATAAT  450

seq1  AGAGTGATATATTTTGCTTGGCTAACCTGTTACAAAATGAAGAACCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATATATTTTGCTTGGCTAACCTGTTACAAAATGAAGAACCTCAT  500

seq1  GTAGTATCAGGGAGGAGTGGGATTTTGATGATTGCTGTGTTTGTAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATCAGGGAGGAGTGGGATTTTGATGATTGCTGTGTTTGTAAATGA  550

seq1  ATAGCCTGTTTTTAAAGGGCTTTATTTATAATTACATTTCTGAAATATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGTTTTTAAAGGGCTTTATTTATAATTACATTTCTGAAATATTG  600

seq1  AAAAGTTTAGATCTTGCTATAAGCATATCCAGTACCTTCAAAATGATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTAGATCTTGCTATAAGCATATCCAGTACCTTCAAAATGATATA  650

seq1  GAGTATATTGATGGTGTCTGGCTTCACTTTCTATCATCTCACTTGAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATTGATGGTGTCTGGCTTCACTTTCTATCATCTCACTTGAGTTT  700

seq1  CTTTGGGTCATTCATACTTGATTATGGGGGAAAAATTGATCAATTCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTCATTCATACTTGATTATGGGGGAAAAATTGATCAATTCACTC  750

seq1  TGTCAGTAACACTAAAGGCCAATATAATTCTAGAATACCATGAGTCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTAACACTAAAGGCCAATATAATTCTAGAATACCATGAGTCACCA  800

seq1  CTGCCAGTCTCTGGATCTAAACTGGATTTTAGTGTCCATCTCTGATCATT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGCCAGTCTCTGGATCTAAACTGGATTTTAGTGTCCATCTCTGATCA-T  849

seq1  AAGTAAACTCTAGTTTCACTTAGACTAAAATCACTCAAGCAGAGATCTTA  900
      |||||||||||||||||||||||||| |||||||||||| ||||||| ||
seq2  AAGTAAACTCTAGTTTCACTTAGACT-AAATCACTCAAG-AGAGATC-TA  896

seq1  AGAGTAGGAGTAATTAGAAAGCCATTCTAAAATTGTGTTTGAGCTCTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAGTAGGAGTAATTAGAAAGCCATTCTAAAATTGTGTTTGAGTTCTGAT  946

seq1  ATATACTGATTCCAGTATTAAATTCAGGTGATTTGGTCAAGATGAGGCTA  1000
      ||||||||| |||||||||||| ||||||||||||||| ||| |||||||
seq2  ATATACTGA-TCCAGTATTAAA-TCAGGTGATTTGGTCCAGA-GAGGCTA  993

seq1  CTGGTAGAGCTACAGTTAAAACAACAACTAGGGAAAACTGATGATCAATT  1050
      |||||||  || |  || ||||||  |||| ||| ||||||||||||| |
seq2  CTGGTAG-TCTCC--TTTAAACAATCACTA-GGAGAACTGATGATCAA-T  1038

seq1  TCTATT  1056
      ||||||
seq2  TCTATT  1044