BAC Information

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BAC

Clone NameB6Ng01-030B20
Chromosome13 (Build37)3 (Build37)
Map Location 105,274,639 - 105,274,91879,442,501 - 79,443,031
singlet/doubletsingletsinglet
Overlap geneAdamts6
Upstream geneLOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, LOC667518
Downstream geneSdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030B20.bB6Ng01-030B20.g
ACCDH860116DH860117
length965936
definitionDH860116|Mus musculus domesticus DNA, BAC clone: B6Ng01-030B20, 5' end.DH860117|Mus musculus domesticus DNA, BAC clone: B6Ng01-030B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,274,639 - 105,274,918)(79,442,501 - 79,443,031)
sequence
gaattctctgggcttcttttatgttcatgggaatttctttctttaggtat
tggaagttttcttctataactttgttgaagatatttgctggccttttaag
ttgagaatcttcattctcatctactattatccataggtttggtcttctca
ttgtgtcctggatttcctgaatgttttgagttgggatctttttgcatttt
ccattttctttgattgttgtgttcatgttacctatggaatcttctgcatc
tgagattctctcttctatctcttgtattctcttgatgatgctcacatcta
tgtttcctgatatctttcctaggatttttatctccagagttgtttccctt
taggttttcttcattgtttctacttctatttttacatcttggattttttt
ttattcaattccatcatctgtttggttgtgttttcctgtaattctttacg
ggatttttgtgtttcttctaccagcttagcagtgtttacctgtagttctt
taaagacttgtacttgtttagcagtgttctcctgtaatttcttgagggat
ttctgtgcttcctctttaagggcttctaccggtttagcagtgttctcctg
taattccttgagggatttctgtgcttcctctttaagggcttctacctgtt
tagccgtgttctcctgtatttctttaagtaagttattaatgtacatccta
aaatcttctaccaccatcaagagatatgattttaaatccgagtcttgctt
gtcgggtgtgttggggtatccaggactttctgtggtgggcttactggatt
ctgatgatgcccattgttcttggtttatgttagtaagatttttaccattg
cctctcaccattaggtaatctctggtgttaatgttcaagctgtctctggc
tggagcttggtcctctgtgattctgttagctctgtcagcactcctgagaa
tcaactctcacctga
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggatagacaaagatcctttcctaatctgttggtggcct
ttttgtctttttgaaggtgtctttttccttgcagaacctttgcagtttta
tgaggtcccatttgtcaattctcaatcttacagcacaatccattgctgtt
tttctcagtaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtataaggagataggaatcgatcaattcac
attcttctacatgataaccaccagttgtgccagcaccctttgttgagaat
gctgtcttttctccactggatggttttagctcccttgttgaagatcaagt
gacaataggtttgtgggttcatttctgggtcttcaattctattccattgg
tctacttgactgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtgcagctttaagtcaggcatggtgattccaccagaggttcttt
tatccttgagaaaagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagtggaattttg
atgggggttgcattgatctgtagattgcttttggcagatagccactttta
caatgttgatcctgccagttccagagcatgggagatctcccactttctga
gatctcttattctttcttcagagcttgaagtcttatcttacagatctttc
atttctattagagtcacgcaagtattttatattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_105274639_105274918
seq2: B6Ng01-030B20.b_71_289 (reverse)

seq1  TGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAA  50
      |||||||||||||||||  |||||   |||||||||||||||||||||||
seq2  TGCAGAAGATTCCATAGGTAACATGAACACAACAATCAAAGAAAATGGAA  50

seq1  AATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATG  100
      ||||||||||||||| ||||||||| || |||||||||||||||||||||
seq2  AATGCAAAAAGATCCCAACTCAAAACATTCAGGAAATCCAGGACACAATG  100

seq1  AGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCA  150
      ||||||||||||||| |||||||   ||| |||||||||||||||| |||
seq2  AGAAGACCAAACCTATGGATAAT---AGTAGATGAGAATGAAGATTCTCA  147

seq1  ACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCC  200
      ||| ||| | |||||||| |||||||||||| |||| |||||||||||||
seq2  ACTTAAAAGGCCAGCAAATATCTTCAACAAAGTTATAGAAGAAAACTTCC  197

seq1  CAAATATAAAGAAAGAGATACCTATGAACATACAAGAAGCCTACAGAACT  250
       | |  |||||||||| || ||                            
seq2  AATACCTAAAGAAAGAAATTCC----------------------------  219

seq1  CCAAATAGACTGGACCAGAAAAGAAATTCC  280
                                    
seq2  ------------------------------  219

seq1: chr3_79442501_79443031
seq2: B6Ng01-030B20.g_488_1003 (reverse)

seq1  AATAATATAAAATATCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCT  50
      ||||||||||||||  |  |||||||||||   |  ||| ||||||||||
seq2  AATAATATAAAATACTT--GCGTGACTCTA---ATAGAAATGAAAGATCT  45

seq1  GTATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCA  100
      ||| ||| || |||||||| | ||||||||||||  |||   ||||||||
seq2  GTAAGAT-AAGACTTCAAG-CTCTGAAGAAAGAA--TAA--GAGATCTCA  89

seq1  GAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGACCAACATTGTA  150
      |||  |||  |||||||||||||||  | | |||||||| ||||||||||
seq2  GAAAGTGG-GAGATCTCCCATGCTCTGGAACTGGCAGGATCAACATTGTA  138

seq1  AAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCAT  200
      ||| |||||||| |||||||||||||||||||| ||||||||| ||||||
seq2  AAAGTGGCTATC-TGCCAAAAGCAATCTACAGA-TCAATGCAACCCCCAT  186

seq1  TAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAAT  250
       |||||||| |||||||||||||||||||||||| ||||||| |||||||
seq2  CAAAATTCC-ACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCAAAT  235

seq1  TCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGAT  300
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTTTTCTCAAGGAT  285

seq1  AAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAG  350
      ||||||||||||||||||||||||||||||||| |||||||  |||||||
seq2  AAAAGAACCTCTGGTGGAATCACCATGCCTGACTTAAAGCTGCACTACAG  335

seq1  AGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGG  400
      |||||||||||||||||||||||||||||||||||| ||||| ||||| |
seq2  AGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGTCAAGTAG  385

seq1  ACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGT  450
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  ACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACAAACCTATTGT  435

seq1  CACTTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAG  500
      |||||||||||| |||||||||| ||||||||||||||||  ||||||||
seq2  CACTTGATCTTCAACAAGGGAGCTAAAACCATCCAGTGGAGAAAAGACAG  485

seq1  CATTTTCAACAATTGGTGCTGGCTCAACTGG  531
      |||| |||||||  ||||||||| |||||||
seq2  CATTCTCAACAAAGGGTGCTGGCACAACTGG  516