BAC Information

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BAC

Clone NameB6Ng01-030C03
Chromosome13 (Build37)
Map Location 21,477,976 - 21,606,245
singlet/doubletdoublet
Overlap geneZkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454
Downstream geneOlfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030C03.bB6Ng01-030C03.g
ACCDH860130DH860131
length1,1581,034
definitionDH860130|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C03, 5' end.DH860131|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,605,076 - 21,606,245)(21,477,976 - 21,479,026)
sequence
gaattctcctttctttgtcttatggtattttttaggtcatttctcttcta
tatcaggctcttgttaattagtcttttttgtcttctatactaaaaataat
ttctgtaccctgtttttacttttgtgttcctatttatctattttgttact
tcgtgtatttgagttactttctattttccactttgtatgtcatccactgc
ttggggaattttcctcaggtacctacacaccctgatatttgaaaccaaaa
ctcactgttctgcctcaatttgtattttattttgaaataaacatcattgc
ctaattgctctaccctaaaatagaatcattgctttttgtgtttctcatcc
caaccttgaagttgtcatgtcatccttttctgtcttccactctcctggtc
tagaaccttgttgatcatgctcatattcttcttgaggtttgtttttgttg
ttgcgtagtctttgttttatacttctacaatacccgtatagccttccaca
tagatctgcatcatgtaagctcaggttactatgattcccttcagtttcct
tccagaatatccaacttatataacacttcaaaaattatcttcaatctcca
ttctcatggtatctcatttttacttggcccccagcagataattttcacca
gtgttccatatccttgttctccattcaagcctcagctttcattactctct
ggcatgtttaccttggtatatcacattcaaacctcctacagttcctagtg
ttatctgttatcttacaagcctttgcctctgtgccttttcctcatgcttt
tttgcttagattactctttgactgtaccttctgttcaaatttgcttcctt
catgtcttttgagacagcatctcctgattgagttcgcctcacaccagcat
cttccttattctgtctgcctaagcacataactttcaagtttgtactatga
tccatgcactcataataccttgctctgcagttattttctagcagtctata
tagtagtttcacatcctgtataattccaagttaaactgtaagcttcttga
aggcaaggattataactgtacaattggatacactgccctgcctttattgc
ctagacaggcgagacaccagagggtgtaaaatgcttgttaataattagtg
gatttttt
gaattcattggcttgccaaagtgtggacttagtggggaataagctttgtg
cagcttattatcagtatgtgttataggtgaacctttgagaaaagtagaac
attaaatgcaatgttcttaaaactctcttttaaaagatgcttagatgtat
ttttaactgtttgttttgctcctatgcatgtctgtgcaccaagtgtgtgt
ggtgccctctggggtcggaaggtgttggatcccctggaactgggttactg
atggtttcagggcactgtgtgggtactgagaattgaacatggtttatctc
caagaacaagcacttttaacttgtgagccatctcaccagcactccactga
aatgtttttccttttgtttttgtttgttttcagacagggtttctctgtat
ctatgaatctcctggaacttgctctgtagatcaggtgaacctcaaactca
gaaatctgcctgcctctgcttctcaagtgccgcaacgaagtgagactact
aaaatactcttcgataaaagactgagagccaagccagagtgtttatatag
ttaattccctagcagtatggtaggagataggcaaacatctgctgatagat
cgttcttccttaggaatcttgtcatacaaggacacagcgagctagcaatg
tcactgcttatggagtgtaactttatgaaacccccctccctatactaagc
agtgtggaacacagcacatcaagagaccaactgctgcttacttactcagt
agtgaagctccggccaactcttgtccacacgtaccagatcctttagtaac
tctgctgtatcatatggactgtcttagcgcagtggttatgagatgcagga
gctcttggttagacccagataaccacccaagtaagaccaacaggctgagc
cttagacattgatcactttattctgaaactcatttcacactacatgagta
ggaaaggttttttttttcttttttttttttgtttcctcagagtacaaaat
tacaaaaaaaatattagtgggattccctggtggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21605076_21606245
seq2: B6Ng01-030C03.b_43_1200 (reverse)

seq1  AAAAAATCCACACAATAATTTAACAAGCATTTATTAAACACCTACTGTGT  50
      |||||||||||  | ||  |||||||||||||     |||||  ||| ||
seq2  AAAAAATCCACTAATTA--TTAACAAGCATTT----TACACCCTCTG-GT  43

seq1  G-CTCAGCACTGTACTAGGCACTAAAGCGAGTGCAGTG-ATACAAATGTT  98
      | ||| || |||| ||||||| |||||  || |||||| || ||| || |
seq2  GTCTC-GC-CTGT-CTAGGCAATAAAGGCAGGGCAGTGTATCCAATTG-T  89

seq1  ACAGTTATAATCCCTGCCCTCAAGGAGCTTACAGTTTAAACTTGGAAATA  148
      ||||||||||||| |||| ||||| |||||||||||| ||||||| ||| 
seq2  ACAGTTATAATCCTTGCCTTCAAGAAGCTTACAGTTT-AACTTGG-AATT  137

seq1  ATACA-GATGTGAAACTACTATATAGACTGCTAGAAAATAACTGCAGAGC  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGATGTGAAACTACTATATAGACTGCTAGAAAATAACTGCAGAGC  187

seq1  AAGGTATTAATGAGTGCATGGATCATAGTACAAACTTGAAAGTTATGTGC  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATT-ATGAGTGCATGGATCATAGTACAAACTTGAAAGTTATGTGC  236

seq1  TTAGGCAGACAGAATAAGGGAAGATGCTGGTGTGAGGCGAACTCAATCAG  297
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAGGCAGACAGAATAA-GGAAGATGCTGGTGTGAGGCGAACTCAATCAG  285

seq1  GAGATGCTGTCTCAAAAGACATGAAGGAAGCAAATTTGAACAGAAGGTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTGTCTCAAAAGACATGAAGGAAGCAAATTTGAACAGAAGGTAC  335

seq1  AGTCAAAGAGTAATCTAAGCAAAAAAGCATGAGGAAAAGGCACAGAGGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGAGTAATCTAAGCAAAAAAGCATGAGGAAAAGGCACAGAGGCA  385

seq1  AAGGCTTGTAAGATAACAGATAACACTAGGAACTGTAGGAGGTTTGAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGTAAGATAACAGATAACACTAGGAACTGTAGGAGGTTTGAATG  435

seq1  TGATATACCAAGGTAAACATGCCAGAGAGTAATGAAAGCTGAGGCTTGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATACCAAGGTAAACATGCCAGAGAGTAATGAAAGCTGAGGCTTGAA  485

seq1  TGGAGAACAAGGATATGGAACACTGGTGAAAATTATCTGCTGGGGGCCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACAAGGATATGGAACACTGGTGAAAATTATCTGCTGGGGGCCAA  535

seq1  GTAAAAATGAGATACCATGAGAATGGAGATTGAAGATAATTTTTGAAGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATGAGATACCATGAGAATGGAGATTGAAGATAATTTTTGAAGTG  585

seq1  TTATATAAGTTGGATATTCTGGAAGGAAACTGAAGGGAATCATAGTAACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAGTTGGATATTCTGGAAGGAAACTGAAGGGAATCATAGTAACC  635

seq1  TGAGCTTACATGATGCAGATCTATGTGGAAGGCTATACGGGTATTGTAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTACATGATGCAGATCTATGTGGAAGGCTATACGGGTATTGTAGA  685

seq1  AGTATAAAACAAAGACTACGCAACAACAAAAACAAACCTCAAGAAGAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAACAAAGACTACGCAACAACAAAAACAAACCTCAAGAAGAATA  735

seq1  TGAGCATGATCAACAAGGTTCTAGACCAGGAGAGTGGAAGACAGAAAAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGATCAACAAGGTTCTAGACCAGGAGAGTGGAAGACAGAAAAGG  785

seq1  ATGACATGACAACTTCAAGGTTGGGATGAGAAACACAAAAAGCAATGATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGACAACTTCAAGGTTGGGATGAGAAACACAAAAAGCAATGATT  835

seq1  CTATTTTAGGGTAGAGCAATTAGGCAATGATGTTTATTTCAAAATAAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAGGGTAGAGCAATTAGGCAATGATGTTTATTTCAAAATAAAAT  885

seq1  ACAAATTGAGGCAGAACAGTGAGTTTTGGTTTCAAATATCAGGGTGTGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGAGGCAGAACAGTGAGTTTTGGTTTCAAATATCAGGGTGTGTA  935

seq1  GGTACCTGAGGAAAATTCCCCAAGCAGTGGATGACATACAAAGTGGAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTGAGGAAAATTCCCCAAGCAGTGGATGACATACAAAGTGGAAAA  985

seq1  TAGAAAGTAACTCAAATACACGAAGTAACAAAATAGATAAATAGGAACAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTAACTCAAATACACGAAGTAACAAAATAGATAAATAGGAACAC  1035

seq1  AAAAGTAAAAACAGGGTACAGAAATTATTTTTAGTATAGAAGACAAAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAAACAGGGTACAGAAATTATTTTTAGTATAGAAGACAAAAAA  1085

seq1  GACTAATTAACAAGAGCCTGATATAGAAGAGAAATGACCTAAAAAATACC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATTAACAAGAGCCTGATATAGAAGAGAAATGACCTAAAAAATACC  1135

seq1  ATAAGACAAAGAAAGGAGAATTC  1170
      |||||||||||||||||||||||
seq2  ATAAGACAAAGAAAGGAGAATTC  1158

seq1: chr13_21477976_21479026
seq2: B6Ng01-030C03.g_64_1097

seq1  GAATTCATTGGCTTGCCAAAGTGTGGACTTAGTGGGGAATAAGCTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCTTGCCAAAGTGTGGACTTAGTGGGGAATAAGCTTTGTG  50

seq1  CAGCTTATTATCAGTATGTGTTATAGGTGAACCTTTGAGAAAAGTAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATTATCAGTATGTGTTATAGGTGAACCTTTGAGAAAAGTAGAAC  100

seq1  ATTAAATGCAATGTTCTTAAAACTCTCTTTTAAAAGATGCTTAGATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGCAATGTTCTTAAAACTCTCTTTTAAAAGATGCTTAGATGTAT  150

seq1  TTTTAACTGTTTGTTTTGCTCCTATGCATGTCTGTGCACCAAGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTGTTTGTTTTGCTCCTATGCATGTCTGTGCACCAAGTGTGTGT  200

seq1  GGTGCCCTCTGGGGTCGGAAGGTGTTGGATCCCCTGGAACTGGGTTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTCTGGGGTCGGAAGGTGTTGGATCCCCTGGAACTGGGTTACTG  250

seq1  ATGGTTTCAGGGCACTGTGTGGGTACTGAGAATTGAACATGGTTTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCAGGGCACTGTGTGGGTACTGAGAATTGAACATGGTTTATCTC  300

seq1  CAAGAACAAGCACTTTTAACTTGTGAGCCATCTCACCAGCACTCCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACAAGCACTTTTAACTTGTGAGCCATCTCACCAGCACTCCACTGA  350

seq1  AATGTTTTTCCTTTTGTTTTTGTTTGTTTTCAGACAGGGTTTCTCTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTCCTTTTGTTTTTGTTTGTTTTCAGACAGGGTTTCTCTGTAT  400

seq1  CTATGAATCTCCTGGAACTTGCTCTGTAGATCAGGTGAACCTCAAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATCTCCTGGAACTTGCTCTGTAGATCAGGTGAACCTCAAACTCA  450

seq1  GAAATCTGCCTGCCTCTGCTTCTCAAGTGCCGCAACGAAGTGAGACTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGCCTGCCTCTGCTTCTCAAGTGCCGCAACGAAGTGAGACTACT  500

seq1  AAAATACTCTTCGATAAAAGACTGAGAGCCAAGCCAGAGTGTTTATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTCTTCGATAAAAGACTGAGAGCCAAGCCAGAGTGTTTATATAG  550

seq1  TTAATTCCCTAGCAGTATGGTAGGAGATAGGCAAACATCTGCTGATAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCCTAGCAGTATGGTAGGAGATAGGCAAACATCTGCTGATAGAT  600

seq1  CGTTCTTCCTTAGGAATCTTGTCATACAAGGACACAGCGAGCTAGCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTCCTTAGGAATCTTGTCATACAAGGACACAGCGAGCTAGCAATG  650

seq1  TCACTGCTTATGGAGTGTAAC-TTATGAAACCCCCCTCCCTATACTAAGC  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCACTGCTTATGGAGTGTAACTTTATGAAACCCCCCTCCCTATACTAAGC  700

seq1  AGTGTGGAACACAGCACATCAAGAGACCAACTGCTGCTTACTTACTCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAACACAGCACATCAAGAGACCAACTGCTGCTTACTTACTCAGT  750

seq1  AGTGAAGCTCCGGCCAACTCTTGTCCCACACGTACCAGATCCTTTAGTAA  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTGAAGCTCCGGCCAACTCTTGT-CCACACGTACCAGATCCTTTAGTAA  799

seq1  CTCTGCTGTATCATATGGACTGTCTTAGCGCAGTGGTTATGAGATGCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGTATCATATGGACTGTCTTAGCGCAGTGGTTATGAGATGCAGG  849

seq1  AGCTCTTGGTTAGACCCAAGATAACCACCCAAGTAAGAACCAACAGGCTG  899
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  AGCTCTTGGTTAGACCC-AGATAACCACCCAAGTAAG-ACCAACAGGCTG  897

seq1  AGCCTTAGACATTGATCACTTTATTCTGAAACTCATTTTCACACTACATG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCCTTAGACATTGATCACTTTATTCTGAAACTCA-TTTCACACTACATG  946

seq1  AGTAGGAAAGGTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTGTTCTCTCA  999
      ||||||||||||||||||       ||| |||||||||||||||  ||| 
seq2  AGTAGGAAAGGTTTTTTT-------TTTCTTTTTTTTTTTTGTTTCCTC-  988

seq1  AGAGTAACAAAATTAACAAGAAAAAAAATATTAGTGGAATTCCATGGGTG  1049
      ||||| ||||||||    | ||||||||||||||||| ||||| | ||||
seq2  AGAGT-ACAAAATT----ACAAAAAAAATATTAGTGGGATTCCCT-GGTG  1032

seq1  GC  1051
      ||
seq2  GC  1034