BAC Information

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BAC

Clone NameB6Ng01-030F18
Chromosome13 (Build37)
Map Location 86,708,254 - 86,835,529
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F18.bB6Ng01-030F18.g
ACCDH860294DH860295
length1,110987
definitionDH860294|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F18, 5' end.DH860295|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,708,254 - 86,709,380)(86,834,517 - 86,835,529)
sequence
gaattcaaagtcctaacctcttgtatttaaacagagacagatttttttta
cctaatgtaaggctattagtcattccttcaggcaaaactttccaatgata
tcactacaggttctttaaatttaccagcacactcaaagcaaaccctttac
aatcaggacgcaaaggaacagtataaatataatcctcaaaatcaatagtt
attctatatgcatttcctaaaatggcagctagagtaggcaagccaagctg
taatgcctccccaagttccatagcctcatcaatctttcatcaatcttaac
tttgcacattgtttgggattaatggaataaccaatcccttggaggtgtgt
gggtacatcagttccagagtctattaatccttcaaagctttttgcttcaa
ttagtaattttaggttagatctctattagtaatagattgccaaaagacat
caaaggaaccaaagccaccttgtcctgccttactcttaacaaatgtggaa
gggagtgcatgcaaggtaactaaaatgagttgagcaattcttttattagc
agacaaagccacaattctatttttccctgcataatcattatctataactc
cgggatagatcagtagtcctttatcagctactgtctgttgcaaatctcta
tgacataaaagcaagtcctgaggatcttttcctgatttcttttttaacat
gaccccagccagttctgaagctgaatcaagtttattattttccagtctgc
cattataccactttaagtacatgaaaaatgatgagatcagttctgggtca
aggaacaaacagggaaaaaaatctcataaacaactttctgtggtcaggat
ggccaagcaaaaggatgccatagaagcctccactgagcccactctgagct
ttgcttaattcaaatttaaatgttctaatctgggcctatttctgaggcta
gccagtgattacccttcctgcacagggaaaaaattctggcgagtgattct
gtacttgtctatgcctttatttttggaagttctcacaagaaaaactatgt
cctcatacttaagaaattctttatcactcagcattgtggaagatggcttg
tactatagtc
gaattcaatctcactttccatgtctgattacagatatttacctgaaaaat
acaagcaaatcatatttcacatttacaaagttgatataggatgtcaaata
ttgtatgttattatttcgatctataaaatttgtacagctttatcaagttg
gagtatcgatatttaaaaatcttgaatcaagaacctcatcagaatcatta
ctgtaaagaggtttttatatactaagttttctttattctattttataagt
tccagtttggcataatatctctttattttaatctttaaatcattttctga
ggtctttgatatggtttcttaaacaattgtattattctaatttaaacact
aattgagttcataatgctgtgcttactgacatatcccaattttctagtgt
agataacaagtatttccagatagtacttcctaccctctaatgaattttaa
caacaaaaatagatatattttcaacatttgagatatacatctaaataatc
ctattgaaaaatatactttctacaagttttgtgctgtgatattttattgt
tgttgtttttattatatttatttctttaactttaaactgtagcatatcat
atatatatataatgatatataaaggaaaataattttgctaatctctaaac
aatatttttattgctaatataaaatttagttctgtatcatcatcagaata
tgctaaacattttaacctgcacactgtccatttgagtctgaactttcaaa
ggaaaatgccccccccccaaattatgtcaccatagatgaaaggagagatc
acctcagtagactttcaatgaaactttttttgaaagcaaatgattctcaa
aatccaaatcaagacactttacactcctgccctgatctagagaatgcttt
agactatatcatgtctaaaatccaggagttacactctctttctctagtac
tctgcagccccttaggtaattactatcataaatgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86708254_86709380
seq2: B6Ng01-030F18.b_40_1149

seq1  GAATTCAAAGTCCTAACCTCTTGTATTTAAACAGAGACAGATTTTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCCTAACCTCTTGTATTTAAACAGAGACAGATTTTTTTTA  50

seq1  CCTAATGTAAGGCTATTAGTCATTCCTTCAGGCAAAACTTTCCAATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGTAAGGCTATTAGTCATTCCTTCAGGCAAAACTTTCCAATGATA  100

seq1  TCACTACAGGTTCTTTAAATTTACCAGCACACTCAAAGCAAACCCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACAGGTTCTTTAAATTTACCAGCACACTCAAAGCAAACCCTTTAC  150

seq1  AATCAGGACGCAAAGGAACAGTATAAATATAATCCTCAAAATCAATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGACGCAAAGGAACAGTATAAATATAATCCTCAAAATCAATAGTT  200

seq1  ATTCTATATGCATTTCCTAAAATGGCAGCTAGAGTAGGCAAGCCAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATATGCATTTCCTAAAATGGCAGCTAGAGTAGGCAAGCCAAGCTG  250

seq1  TAATGCCTCCCCAAGTTCCATAGCCTCATCAATCTTTCATCAATCTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTCCCCAAGTTCCATAGCCTCATCAATCTTTCATCAATCTTAAC  300

seq1  TTTGCACATTGTTTGGGATTAATGGAATAACCAATCCCTTGGAGGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACATTGTTTGGGATTAATGGAATAACCAATCCCTTGGAGGTGTGT  350

seq1  GGGTACATCAGTTCCAGAGTCTATTAATCCTTCAAAGCTTTTTGCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACATCAGTTCCAGAGTCTATTAATCCTTCAAAGCTTTTTGCTTCAA  400

seq1  TTAGTAATTTTAGGTTAGATCTCTATTAGTAATAGATTGCCAAAAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATTTTAGGTTAGATCTCTATTAGTAATAGATTGCCAAAAGACAT  450

seq1  CAAAGGAACCAAAGCCACCTTGTCCTGCCTTACTCTTAACAAATGTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAACCAAAGCCACCTTGTCCTGCCTTACTCTTAACAAATGTGGAA  500

seq1  GGGAGTGCATGCAAGGTAACTAAAATGAGTTGAGCAATTCTTTTATTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCATGCAAGGTAACTAAAATGAGTTGAGCAATTCTTTTATTAGC  550

seq1  AGACAAAGCCACAATTCTATTTTTCCCTGCATAATCATTATCTATAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGCCACAATTCTATTTTTCCCTGCATAATCATTATCTATAACTC  600

seq1  CGGGATAGATCAGTAGTCCTTTATCAGCTACTGTCTGTTGCAAATCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATAGATCAGTAGTCCTTTATCAGCTACTGTCTGTTGCAAATCTCTA  650

seq1  TGACATAAAAGCAAGTCCTGAGGATCTTTTCCTGATTTCTTTTTTAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAAAGCAAGTCCTGAGGATCTTTTCCTGATTTCTTTTTTAACAT  700

seq1  GACCCCAGCCAGTTCTGAAGCTGAATCAAGTTTATTATTTTCCAGTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGCCAGTTCTGAAGCTGAATCAAGTTTATTATTTTCCAGTCTGC  750

seq1  CATTATACCACTTTAAGTACATGAAAAATGATGAGATCAGTTCTGGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATACCACTTTAAGTACATGAAAAATGATGAGATCAGTTCTGGGTCA  800

seq1  AGGAACAAACAGGGAAAAAAAATCTCATAAACAACTTTCTGTGGTCAGGA  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGAACAAACAGGG-AAAAAAATCTCATAAACAACTTTCTGTGGTCAGGA  849

seq1  TGGCCAAGCAAAAAGGAATGCCATAGAAGCCTCCACTGAGCCCACTCTGA  900
      |||||||||||||  | |||||||||||||||||||||||||||||||||
seq2  TGGCCAAGCAAAA--GGATGCCATAGAAGCCTCCACTGAGCCCACTCTGA  897

seq1  GCTTTGCCTTAATTCAAATTTAAATGTTCTTAATCTGGGCCTATTTCCTG  950
      |||||| |||||||||||||||||||||| |||||||||||||||| |||
seq2  GCTTTG-CTTAATTCAAATTTAAATGTTC-TAATCTGGGCCTATTT-CTG  944

seq1  AGGCCTAGCCCAGTGATTACCCTTCCTGCACAGGGAAGAAAATTCTGGCG  1000
      ||| |||| |||||||||||||||||||||||||||| ||||||||||| 
seq2  AGG-CTAG-CCAGTGATTACCCTTCCTGCACAGGGAA-AAAATTCTGGC-  990

seq1  GAGTGATTCTGTTACTTGTCTATGCCTCTATTTTTGGACAGTCTTCACTA  1050
      ||||||||||| ||||||||||||||| |||||||||| |||  |||| |
seq2  GAGTGATTCTG-TACTTGTCTATGCCTTTATTTTTGGA-AGTTCTCACAA  1038

seq1  GAATAACCTATGTCCTCATACTTAAAGAACATTCTTTATCACCTCAGCAT  1100
      ||| || |||||||||||||||| ||||| ||||||||||| ||||||||
seq2  GAA-AAACTATGTCCTCATACTT-AAGAA-ATTCTTTATCA-CTCAGCAT  1084

seq1  TGTGAAAGCATTGCTTGTACTATAGTC  1127
      |||| ||| || |||||||||||||||
seq2  TGTGGAAG-ATGGCTTGTACTATAGTC  1110

seq1: chr13_86834517_86835529
seq2: B6Ng01-030F18.g_65_1051 (reverse)

seq1  AGACATTTTATGATAGTAAATTTACCTAAAGAGTGGCTGCAGAAGTACTA  50
      ||||| |||||||||||||  |||||||   || |||||||| |||||| 
seq2  AGACA-TTTATGATAGTAA--TTACCTA---AGGGGCTGCAG-AGTACT-  42

seq1  AGAGAAAAGGAAGAGTGTAAACTCCTGGGATTTTTAAGAACATGATATAG  100
      |||||||    ||||||| ||||||| |||||||  || |||||||||||
seq2  AGAGAAA---GAGAGTGT-AACTCCT-GGATTTT--AG-ACATGATATAG  84

seq1  TCTAAAAGCATTTCTTCTAGAATCAGGGCAGGAGTGTAAAAGTTGTCTTG  150
      ||| ||||||||   ||||| |||||||||||||||||||   |||||||
seq2  TCT-AAAGCATT--CTCTAG-ATCAGGGCAGGAGTGTAAA--GTGTCTTG  128

seq1  ATTTTGGATTTTGAAGAATCATTTTGCTTTCAAAAAAAGTTTTCATTGAA  200
      | ||||||||||| ||||||| ||||||||||||||||| ||||||||||
seq2  A-TTTGGATTTTG-AGAATCA-TTTGCTTTCAAAAAAAG-TTTCATTGAA  174

seq1  AGTCTACTGAGGTGATCTCTTCTTTCATCTATGGTGACATAATTTGGGGG  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTCTACTGAGGTGATCTCTCCTTTCATCTATGGTGACATAATTTGGGGG  224

seq1  GGGGGCATTTTCCTTTGAAAGTTCAGACTCAAATGGACAGTGTGCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATTTTCCTTTGAAAGTTCAGACTCAAATGGACAGTGTGCAGGTT  274

seq1  AAAATGTTTAGCATATTCTGATGATGATACAGAACTAAATTTTATATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTAGCATATTCTGATGATGATACAGAACTAAATTTTATATTAG  324

seq1  CAATAAAAATATTGTTTAGAGATTAGCAAAATTATTTTCCTTTATATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAATATTGTTTAGAGATTAGCAAAATTATTTTCCTTTATATATC  374

seq1  ATTATATATATATATGATATGCTACAGTTTAAAGTTAAAGAAATAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATATATATGATATGCTACAGTTTAAAGTTAAAGAAATAAATAT  424

seq1  AATAAAAACAACAACAATAAAATATCACAGCACAAAACTTGTAGAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACAACAACAATAAAATATCACAGCACAAAACTTGTAGAAAGTA  474

seq1  TATTTTTCAATAGGATTATTTAGATGTATATCTCAAATGTTGAAAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCAATAGGATTATTTAGATGTATATCTCAAATGTTGAAAATATA  524

seq1  TCTATTTTTGTTGTTAAAATTCATTAGAGGGTAGGAAGTACTATCTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTGTTGTTAAAATTCATTAGAGGGTAGGAAGTACTATCTGGAA  574

seq1  ATACTTGTTATCTACACTAGAAAATTGGGATATGTCAGTAAGCACAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTTATCTACACTAGAAAATTGGGATATGTCAGTAAGCACAGCAT  624

seq1  TATGAACTCAATTAGTGTTTAAATTAGAATAATACAATTGTTTAAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTCAATTAGTGTTTAAATTAGAATAATACAATTGTTTAAGAAAC  674

seq1  CATATCAAAGACCTCAGAAAATGATTTAAAGATTAAAATAAAGAGATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAAGACCTCAGAAAATGATTTAAAGATTAAAATAAAGAGATATT  724

seq1  ATGCCAAACTGGAACTTATAAAATAGAATAAAGAAAACTTAGTATATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAACTGGAACTTATAAAATAGAATAAAGAAAACTTAGTATATAAA  774

seq1  AACCTCTTTACAGTAATGATTCTGATGAGGTTCTTGATTCAAGATTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTTACAGTAATGATTCTGATGAGGTTCTTGATTCAAGATTTTTA  824

seq1  AATATCGATACTCCAACTTGATAAAGCTGTACAAATTTTATAGATCGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCGATACTCCAACTTGATAAAGCTGTACAAATTTTATAGATCGAAA  874

seq1  TAATAACATACAATATTTGACATCCTATATCAACTTTGTAAATGTGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACATACAATATTTGACATCCTATATCAACTTTGTAAATGTGAAAT  924

seq1  ATGATTTGCTTGTATTTTTCAGGTAAATATCTGTAATCAGACATGGAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGCTTGTATTTTTCAGGTAAATATCTGTAATCAGACATGGAAAG  974

seq1  TGAGATTGAATTC  1013
      |||||||||||||
seq2  TGAGATTGAATTC  987