BAC Information

Click to search

BAC

Clone NameB6Ng01-030I02
Chromosome13 (Build37)
Map Location 82,516,966 - 82,517,772
singlet/doubletsinglet
Overlap geneLOC238756
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030I02.bB6Ng01-030I02.g
ACCDH860391DH860392
length8161,026
definitionDH860391|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I02, 5' end.DH860392|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaacataattccaccttaaattttgccttattttctatctagat
aataaaataaatattttagtacactgtttcataaagaaaattggtttgtt
ttgggccatggttctggtaaaagggtgagaggtcacatttgggtgtctta
gattccttgtgcaaacaattccataacaaaagataatacaacttatttgt
tacttttgtatctagctggtctctctgtgttcttgcaaagacaaactgat
tcaaaagtgaggctacttgtaagtgaccttgtctaattcttactactttc
caaagttttcacctctagtccttagcctgattaggtttccaccatgataa
ctatttgaaagggtgatggaatttcagcactcaaagccttaggagatttc
aaatctctacaagcatagactttacacttgttagacattttgcagtaggt
agattaagttattcaattataaaatttatattattttctattatttcata
aattgtcagttatcatgggatcaatatgttatagtgagtaggcagtaaga
atccagtatttttgtctttcagaaataaataatcagtggttcttactttt
tgtcattgtagttttgtcattgtattttatcattgttaaagtattacctt
tgaaataagttaagctttttttttgtatgtgttaggtttgtgccaaacta
tttttgattaccctttccatggaaaatataacccttttcttaatttcttt
tctttgttgttgtttgtttgttgttgtttttaaagcagacttaattcatt
ttattttttcttgtat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgcctaagatcaaaatttcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattattggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtattaccggaagatccagcaatacctctcctggac
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggatcatgtagagactgccatatccagggatccaccccataatc
agcatcctacgctgacactattgcatacactagcaagatttttatcgaaa
ggacccagatggtagctgtctcttgtgtgatttggcggggcttacaacac
agaaagtggatgctccacgtcagcctatggatggaaccacaggctcccat
tggagacctaagaaattaccaggagctaaagggatctgcaaccctaatag
gtgaacaacattagaactaacctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82516966_82517772
seq2: B6Ng01-030I02.b_32_847

seq1  GAATTCCAACATAATTCCACCTTAAATTTTGCCTTATTTTCTATCTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACATAATTCCACCTTAAATTTTGCCTTATTTTCTATCTAGAT  50

seq1  AATAAAATAAATATTTTAGTACACTGTTTCATAAAGAAAATTGGTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAATATTTTAGTACACTGTTTCATAAAGAAAATTGGTTTGTT  100

seq1  TTGGGCCATGGTTCTGGTAAAAGGGTGAGAGGTCACATTTGGGTGTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCATGGTTCTGGTAAAAGGGTGAGAGGTCACATTTGGGTGTCTTA  150

seq1  GATTCCTTGTGCAAACAATTCCATAACAAAAGATAATACAACTTATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTGTGCAAACAATTCCATAACAAAAGATAATACAACTTATTTGT  200

seq1  TACTTTTGTATCTAGCTGGTCTCTCTGTGTTCTTGCAAAGACAAACTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGTATCTAGCTGGTCTCTCTGTGTTCTTGCAAAGACAAACTGAT  250

seq1  TCAAAAGTGAGGCTACTTGTAAGTGACCTTGTCTAATTCTTACTACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTGAGGCTACTTGTAAGTGACCTTGTCTAATTCTTACTACTTTC  300

seq1  CAAAGTTTTCACCTCTAGTCCTTAGCCTGATTAGGTTTCCACCATGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTTCACCTCTAGTCCTTAGCCTGATTAGGTTTCCACCATGATAA  350

seq1  CTATTTGAAAGGGTGATGGAATTTCAGCACTCAAAGCCTTAGGAGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGAAAGGGTGATGGAATTTCAGCACTCAAAGCCTTAGGAGATTTC  400

seq1  AAATCTCTACAAGCATAGACTTTACACTTGTTAGACATTTTGCAGTAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTACAAGCATAGACTTTACACTTGTTAGACATTTTGCAGTAGGT  450

seq1  AGATTAAGTTATTCAATTATAAAATTTATATTATTTTCTATTATTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGTTATTCAATTATAAAATTTATATTATTTTCTATTATTTCATA  500

seq1  AATTGTCAGTTATCATGGGATCAATATGTTATAGTGAGTAGGCAGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCAGTTATCATGGGATCAATATGTTATAGTGAGTAGGCAGTAAGA  550

seq1  ATCCAGTATTTTTGTCTTTCAGAAATAAATAATCAGTGGTTCTTACTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTATTTTTGTCTTTCAGAAATAAATAATCAGTGGTTCTTACTTTT  600

seq1  TGTCATTGTAGTTTTGTCATTGTATTTTATCATTGTT-AAGTATTACCTT  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTCATTGTAGTTTTGTCATTGTATTTTATCATTGTTAAAGTATTACCTT  650

seq1  TGAAATAAGTTAAGC--TTTTTTTGTATGTG-TAGGTTTGTGCCAAACTA  696
      |||||||||||||||  |||||||||||||| ||||||||||||||||||
seq2  TGAAATAAGTTAAGCTTTTTTTTTGTATGTGTTAGGTTTGTGCCAAACTA  700

seq1  -TTTTGATTACCC-TTCCATGG-AAATATAACCC-TTTCTTAATTTC-TT  741
       |||||||||||| |||||||| ||||||||||| |||||||||||| ||
seq2  TTTTTGATTACCCTTTCCATGGAAAATATAACCCTTTTCTTAATTTCTTT  750

seq1  TCTTTGTTGTTGTTTGTTTGTTTGTTTGTTTTTAAAGCAGACTTAATTCA  791
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  TCTTTGTTGTTGTTTGTTTGTT--GTTGTTTTTAAAGCAGACTTAATTCA  798

seq1  TTT--ATTTTTCTTGTAT  807
      |||   ||||||||||||
seq2  TTTTATTTTTTCTTGTAT  816