BAC Information

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BAC

Clone NameB6Ng01-030J17
Chromosome13 (Build37)
Map Location 109,501,154 - 109,654,271
singlet/doubletdoublet
Overlap genePde4d, LOC621663
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144
Downstream geneLOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030J17.bB6Ng01-030J17.g
ACCDH860459DH860460
length851715
definitionDH860459|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J17, 5' end.DH860460|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,653,422 - 109,654,271)(109,501,154 - 109,501,868)
sequence
gaattcaacatataaaaggactgattagtgaattattaaaatgtatccac
ttccttgatcatataagatctatttttaaaaaaaatcacgagttcagagg
ataacagaagagctgtattgtaaggaatcattcttttaagtaagaacttt
attttcacagaactttggaaccaagtatagagaatcaaatctccgttagg
ttcaagctcctgtggacctctcatgcatgttgacatttttaaatcatact
ttcattaattctttgaaaacttcgtataataatattgtgatcatattcat
cctgcctccccagctttccccttctctatacttatccaacattctctcct
tctccctttcctccccctccctctccctcttcctttccctctgcttacct
ccaccaccatcaccactatcccctgcacctccattgagtccaatttggta
catccactggcagagtaaggcatttcagaaagcagtggccttgtcgtatg
gtgatagatgttaaggaaaggattacatacaataagtgagagatacgtat
aataagtaaaagtaataatgtcagagcaaaacaatatttcagagaaaaat
taaaatgaacctctaagtctgtgaagagttgcttggacactcaaaaccac
cccaaggagtttctcaaatataaactaggaaaacaggaaatcatgatttt
tctaatgtcacacagttgaaataatatgatgattcttcagtattgaccat
attgggtttatatatcccagtgacacactgaaataattttgtaagaatat
caaactgactagctcccaggagaggggaggagtgaattgggggagggttt
t
gaattctacacagaataagaaaaagacctctctaccaacttcagtaaaaa
taaagggtttcaatagacacttcacagatgtccagtgaacacagcaagga
atgtcagcaccatcattctttggggaatttcattgacaactacaataaga
aagtaatgtgcacacaccagaaaggccggcattaaagattgataacacaa
aatgctcacaagaagacagaactagtgcacacttaactggaaaaaatctc
acatacttatcaaaaagacagcatgtaaacagaatttgtcactcctgtat
gctgtaatgtaatctatggaaatgaacctctggttcatgtggcaatgtgg
ataaattccacaggactaatgctgggttaaagaatgaaggaaaagtccta
acgtgccttgtgagattccatttccaggaagttccaaaacaaaaataaca
caacattaaaagaaaaaaaatacaattgcttttaggaaggaagattgact
agaagagcatattacagaacatggaaacattgcacttcatagtatagccc
tgagcgatctgtgtatgcccattggtcaaaacagtggcagtaggctttat
gcacttttctgcatgtaaatttatagaaaatactcttaagacattaggag
aaggaggaggaaaaggaggaggggaagaagaagaagaaggagaagaagga
gaaggagaaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_109653422_109654271
seq2: B6Ng01-030J17.b_42_892 (reverse)

seq1  ACAACCCTTCCCCAATTCACTCCTCCCCTCTCCTGGGAGCTAGTCAGTTT  50
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTCCCCCAATTCACTCCTCCCCTCTCCTGGGAGCTAGTCAGTTT  50

seq1  GATATTCTTACAAAATTATTTCAGTGTGTCACTGGGATATATAAACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTTACAAAATTATTTCAGTGTGTCACTGGGATATATAAACCCAA  100

seq1  TATGGTCAATACTGAAGAATCATCATATTATTTCAACTGTGTGACATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCAATACTGAAGAATCATCATATTATTTCAACTGTGTGACATTAG  150

seq1  AAAAATCATGATTTCCTGTTTTCCTAGTTTATATTTGAG-AACTCCTTGG  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAATCATGATTTCCTGTTTTCCTAGTTTATATTTGAGAAACTCCTTGG  200

seq1  GGTGGTTTTGAGTGTCCAAGCAACTCTTCACAGACTTAGAGGTTCATTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTTGAGTGTCCAAGCAACTCTTCACAGACTTAGAGGTTCATTTT  250

seq1  AATTTTTCTCTGAAATATTGTTTTGCTCTGACATTATTACTTTTACTTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTCTGAAATATTGTTTTGCTCTGACATTATTACTTTTACTTAT  300

seq1  TATACGTATCTCTCACTTATTGTATGTAATCCTTTCCTTAACATCTATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTATCTCTCACTTATTGTATGTAATCCTTTCCTTAACATCTATCA  350

seq1  CCATACGACAAGGCCACTGCTTTCTGAAATGCCTTACTCTGCCAGTGGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACGACAAGGCCACTGCTTTCTGAAATGCCTTACTCTGCCAGTGGAT  400

seq1  GTACCAAATTGGACTCAATGGAGGTGCAGGGGATAGTGGTGATGGTGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAATTGGACTCAATGGAGGTGCAGGGGATAGTGGTGATGGTGGTG  450

seq1  GAGGTAAGCAGAGGGAAAGGAAGAGGGAGAGGGAGGGGGAGGAAAGGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAGCAGAGGGAAAGGAAGAGGGAGAGGGAGGGGGAGGAAAGGGAG  500

seq1  AAGGAGAGAATGTTGGATAAGTATAGAGAAGGGGAAAGCTGGGGAGGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAATGTTGGATAAGTATAGAGAAGGGGAAAGCTGGGGAGGCAG  550

seq1  GATGAATATGATCACAATATTATTATACGAAGTTTTCAAAGAATTAATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATATGATCACAATATTATTATACGAAGTTTTCAAAGAATTAATGA  600

seq1  AAGTATGATTTAAAAATGTCAACATGCATGAGAGGTCCACAGGAGCTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGATTTAAAAATGTCAACATGCATGAGAGGTCCACAGGAGCTTGA  650

seq1  ACCTAACGGAGATTTGATTCTCTATACTTGGTTCCAAAGTTCTGTGAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACGGAGATTTGATTCTCTATACTTGGTTCCAAAGTTCTGTGAAAA  700

seq1  TAAAGTTCTTACTTAAAAGAATGATTCCTTACAATACAGCTCTTCTGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCTTACTTAAAAGAATGATTCCTTACAATACAGCTCTTCTGTTA  750

seq1  TCCTCTGAACTCGTGATTTTTTTTAAAAATAGATCTTATATGATCAAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAACTCGTGATTTTTTTTAAAAATAGATCTTATATGATCAAGGA  800

seq1  AGTGGATACATTTTAATAATTCACTAATCAGTCCTTTTATATGTTGAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATACATTTTAATAATTCACTAATCAGTCCTTTTATATGTTGAATT  850

seq1  C  850
      |
seq2  C  851

seq1: chr13_109501154_109501868
seq2: B6Ng01-030J17.g_67_781

seq1  GAATTCTACACAGAATAAGAAAAAGACCTCTCTACCAACTTCAGTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAGAATAAGAAAAAGACCTCTCTACCAACTTCAGTAAAAA  50

seq1  TAAAGGGTTTCAATAGACACTTCACAGATGTCCAGTGAACACAGCAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTTTCAATAGACACTTCACAGATGTCCAGTGAACACAGCAAGGA  100

seq1  ATGTCAGCACCATCATTCTTTGGGGAATTTCATTGACAACTACAATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCACCATCATTCTTTGGGGAATTTCATTGACAACTACAATAAGA  150

seq1  AAGTAATGTGCACACACCAGAAAGGCCGGCATTAAAGATTGATAACACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGTGCACACACCAGAAAGGCCGGCATTAAAGATTGATAACACAA  200

seq1  AATGCTCACAAGAAGACAGAACTAGTGCACACTTAACTGGAAAAAATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCACAAGAAGACAGAACTAGTGCACACTTAACTGGAAAAAATCTC  250

seq1  ACATACTTATCAAAAAGACAGCATGTAAACAGAATTTGTCACTCCTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTATCAAAAAGACAGCATGTAAACAGAATTTGTCACTCCTGTAT  300

seq1  GCTGTAATGTAATCTATGGAAATGAACCTCTGGTTCATGTGGCAATGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATGTAATCTATGGAAATGAACCTCTGGTTCATGTGGCAATGTGG  350

seq1  ATAAATTCCACAGGACTAATGCTGGGTTAAAGAATGAAGGAAAAGTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCCACAGGACTAATGCTGGGTTAAAGAATGAAGGAAAAGTCCTA  400

seq1  ACGTGCCTTGTGAGATTCCATTTCCAGGAAGTTCCAAAACAAAAATAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCTTGTGAGATTCCATTTCCAGGAAGTTCCAAAACAAAAATAACA  450

seq1  CAACATTAAAAGAAAAAAAATACAATTGCTTTTAGGAAGGAAGATTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTAAAAGAAAAAAAATACAATTGCTTTTAGGAAGGAAGATTGACT  500

seq1  AGAAGAGCATATTACAGAACATGGAAACATTGCACTTCATAGTATAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCATATTACAGAACATGGAAACATTGCACTTCATAGTATAGCCC  550

seq1  TGAGCGATCTGTGTATGCCCATTGGTCAAAACAGTGGCAGTAGGCTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGATCTGTGTATGCCCATTGGTCAAAACAGTGGCAGTAGGCTTTAT  600

seq1  GCACTTTTCTGCATGTAAATTTATAGAAAATACTCTTAAGACATTAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTCTGCATGTAAATTTATAGAAAATACTCTTAAGACATTAGGAG  650

seq1  AAGGAGGAGGAAAAGGAGGAGGGGAAGAAGAAGAAGAAGGAGAAGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAGGAAAAGGAGGAGGGGAAGAAGAAGAAGAAGGAGAAGAAGGA  700

seq1  GAAGGAGAAGGAAGA  715
      |||||||||||||||
seq2  GAAGGAGAAGGAAGA  715