BAC Information

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BAC

Clone NameB6Ng01-030M10
Chromosome13 (Build37)
Map Location 104,599,890 - 104,745,140
singlet/doubletdoublet
Overlap geneErbb2ip, LOC100040086, D130037M23Rik
Upstream geneMast4, EG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12
Downstream geneNln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M10.bB6Ng01-030M10.g
ACCDH860578DH860579
length1,046895
definitionDH860578|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M10, 5' end.DH860579|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,599,890 - 104,600,946)(104,744,239 - 104,745,140)
sequence
gaattctaccttctctgtatccttacattattttctgttcttctgacagg
ttatcaggacagttaactcactgtagatttattgcatttccttgataatt
actggtgctgacatctttcctgtgcttactggacatttatacagccttcg
gagaaatgtctatccaagtcattttgttcagtggtagatattctttatat
attctgaatattgacctctgaggttgtcttttccctttgctggtagttct
cttacatggtctggtctatacaatgaatgtgactccctggtcctattttt
tcattttgttgcttgtgctaacgttagagtaaacagatatatcctcccct
gttccaatgtggatgtctttttttttgttgttgttgtggtttaaatttca
gtattatttatcagtgacaaaaatgagtgtccttttctctaatcttagat
aaaaagccctcagccttccatcattgaacacagtattacctgtgggattt
tcatatagttttcttccttgttgagaagggacatgtgtgtgtaggtaaga
gggtaccaggcaccccctctattgttctcagacttactctcctgagacag
gagctcactgaacctggagctcagttttggctagcatggctggccagtaa
gctcccatctccatacccagtactggggttatacaagactggccatgcct
ggtgcttctcttacacagatgctggggactctaacgtggttgtcatgttt
gcacagcagatgatcttagctgctgaacccagcaacatttatttgtgtgt
tattgttgttttaatgacatgaaggtataaaactttgtttctgtctgtgt
gatttattggcttttttaaaaaaaataatgtacaggctctttatcctttg
attttgtatgctgaattttaaggtattcattggggcgaatatctttatgt
aaggtggatttggcttgtagaatatttgggattgtgtgtgtcacccattg
attcatagctggctacaagagcttgacagaggggtataacagaatt
gaattcaataagataatgttcacaagccaagctctagtagcatgttttca
taaactatccttttctatcattcctgtcagttcagtccccatttgtaaag
tatgacaatcttatttttcaacacacaattaaacactgttcctttctccc
gaatgtaattgatttcagcgttcactcattccagagcctgtgctaacttc
tggagctacaatcattagtttgtggcaatgtcactgtttgcataaagttg
aggatcttgaataggaaccgggtagcaaaacactgcacagtgaagcaggg
gacaatgggaagaagcgccaccgtgtgcgcggtggcacagggcatggtct
cttgacctgggctgagagctttggtgaggctccggaagatgccataccag
agacaacagaatagatgagacttagctaggtgatgccggggctacaaact
gttccagaaaggtcataatgagtcccaagaaaggaaatgctggagtagag
aatgggagagcacccagagatgacgatgagtggccagaagctacagaaag
actctgtaagccatataaagaagtcttcccttctccctgaagacatgcaa
aggcctgattggccatgacgtgaccacattgctggcccaactgtggagga
gatcctcttgggaaaaaatgaggaggggtgggtaagatcgtgttcttgga
caagctgtgcttgtggtcagcagaacaagggtgctggctttcatctgtca
tcctcatgggaaacccaggcggaaagtgtaagtttgaagtccaccttaac
tacatagtgagaccctgtctcacaagaaaaggaaaaaaaaagcatatatc
tttcccctggatgttgataaggccagggtaaatgtattcatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_104599890_104600946
seq2: B6Ng01-030M10.b_46_1091

seq1  GAATTCTACCTTCTCTGTATCCTTACATTATTTTCTGTTCTTCTGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTTCTCTGTATCCTTACATTATTTTCTGTTCTTCTGACAGG  50

seq1  TTATCAGGACAGTTAACTCACTGTAGATTTATTGCATTTCCTTGATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGGACAGTTAACTCACTGTAGATTTATTGCATTTCCTTGATAATT  100

seq1  ACTGGTGCTGACATCTTTCCTGTGCTTACTGGACATTTATACAGCCTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGCTGACATCTTTCCTGTGCTTACTGGACATTTATACAGCCTTCG  150

seq1  GAGAAATGTCTATCCAAGTCATTTTGTTCAGTGGTAGATATTCTTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGTCTATCCAAGTCATTTTGTTCAGTGGTAGATATTCTTTATAT  200

seq1  ATTCTGAATATTGACCTCTGAGGTTGTCTTTTCCCTTTGCTGGTAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATATTGACCTCTGAGGTTGTCTTTTCCCTTTGCTGGTAGTTCT  250

seq1  CTTACATGGTCTGGTCTATACAATGAATGTGACTCCCTGGTCCTATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGGTCTGGTCTATACAATGAATGTGACTCCCTGGTCCTATTTTT  300

seq1  TCATTTTGTTGCTTGTGCTAACGTTAGAGTAAACAGATATATCCTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTGCTTGTGCTAACGTTAGAGTAAACAGATATATCCTCCCCT  350

seq1  GTTCCAATGTGGATGTCTTTTTTTTTGTTGTTGTTGTGGTTTAAATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATGTGGATGTCTTTTTTTTTGTTGTTGTTGTGGTTTAAATTTCA  400

seq1  GTATTATTTATCAGTGACAAAAATGAGTGTCCTTTTCTCTAATCTTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTTATCAGTGACAAAAATGAGTGTCCTTTTCTCTAATCTTAGAT  450

seq1  AAAAAGCCCTCAGCCTTCCATCATTGAACACAGTATTACCTGTGGGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCCTCAGCCTTCCATCATTGAACACAGTATTACCTGTGGGATTT  500

seq1  TCATATAGTTTTCTTCCTTGTTGAGAAGGGACATGTGTGTGTAGGTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGTTTTCTTCCTTGTTGAGAAGGGACATGTGTGTGTAGGTAAGA  550

seq1  GGGTACCAGGCACCCCCTCTATTGTTCTCAGACTTACTCTCCTGAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCAGGCACCCCCTCTATTGTTCTCAGACTTACTCTCCTGAGACAG  600

seq1  GAGCTCACTGAACCTGGAGCTCAGTTTTGGCTAGCATGGCTGGCCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACTGAACCTGGAGCTCAGTTTTGGCTAGCATGGCTGGCCAGTAA  650

seq1  GCTCCCATCTCCATACCCAGTACTGGGGTTATACAAGACTGGCCATGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATCTCCATACCCAGTACTGGGGTTATACAAGACTGGCCATGCCT  700

seq1  GGTGCTTCTCTTACACAGATGCTGGGGACTCTAACGTGGTTGTCATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCTCTTACACAGATGCTGGGGACTCTAACGTGGTTGTCATGTTT  750

seq1  GCACAGCAGATGATCTTAGCTGCTGAACCCAGCAACATTTATTTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGATGATCTTAGCTGCTGAACCCAGCAACATTTATTTGTGTGT  800

seq1  TATTGTTGTTTTAATGACATGAAGGTATAAAACTTTGTTCCTGTCTGTGT  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  TATTGTTGTTTTAATGACATGAAGGTATAAAACTTTGTTTCTGTCTGTG-  849

seq1  TGATTTAATGGCTTTTTTTAAAAAAAATAATGTACAGTCTCTTTATTCTT  900
      ||||||| |||| |||||||||||||||||||||||| |||||||| |||
seq2  TGATTTATTGGC-TTTTTTAAAAAAAATAATGTACAGGCTCTTTATCCTT  898

seq1  TGATTTTGTATGCTGAATTTT-AGGTATTCATTGGGGCGAATAATTCTTT  949
      ||||||||||||||||||||| |||||||||||||||||||||  |||||
seq2  TGATTTTGTATGCTGAATTTTAAGGTATTCATTGGGGCGAATA--TCTTT  946

seq1  AGTGTAAGGTTGAATTTGGCTTGTTAGAATATTTGGGATTGTGTGTGTCA  999
      | ||||||| || |||||||||| ||||||||||||||||||||||||||
seq2  A-TGTAAGG-TGGATTTGGCTTG-TAGAATATTTGGGATTGTGTGTGTCA  993

seq1  CCCAATGAGTTTCATTAGCTGGCTACAAGAGCATGACAGAGGGGTTATTT  1049
      |||| |||  |||| ||||||||||||||||| ||||||||||||   | 
seq2  CCCATTGA--TTCA-TAGCTGGCTACAAGAGCTTGACAGAGGGGT--ATA  1038

seq1  ACAGAATT  1057
      ||||||||
seq2  ACAGAATT  1046

seq1: chr13_104744239_104745140
seq2: B6Ng01-030M10.g_70_964 (reverse)

seq1  TAAAATGATATCATTTTACCCTTGACTTTATCAACATCCAGGGGAAAGAT  50
      |||||||| ||   ||||||| || | |||||||||||||||||||||||
seq2  TAAAATGA-ATACATTTACCC-TGGCCTTATCAACATCCAGGGGAAAGAT  48

seq1  ATATGCTTTTTTTTTTCTTTTTTCTTTGTGAGACAGGGTCTCACTATGTA  100
      ||||||||||||||| |||||    |||||||||||||||||||||||||
seq2  ATATGCTTTTTTTTTCCTTTT---CTTGTGAGACAGGGTCTCACTATGTA  95

seq1  GTTAAGGTGGACTTCAAACTTACACTTTCCTGCCTGGGTTTCCCATGAGG  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTAAGGTGGACTTCAAACTTACACTTTCC-GCCTGGGTTTCCCATGAGG  144

seq1  ATGACAGATGAAAGCCAGCACCCTTGTTCTGCTGACCACAAGCACAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGACAGATGAAAGCCAGCACCCTTGTTCTGCTGACCACAAGCACAG-CT  193

seq1  TGTCCAAGAACACGATCTTACCCACCCCTCCTCATTTTTTCCCAAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGAACACGATCTTACCCACCCCTCCTCATTTTTTCCCAAGAGGA  243

seq1  TCTCCTCCACAGTTGGGCCAGCAATGTGGTCACGTCATGGCCAATCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCACAGTTGGGCCAGCAATGTGGTCACGTCATGGCCAATCAGGC  293

seq1  CTTTGCATGTCTTCAGGGAGAAGGGAAGACTTCTTTATATGGCTTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATGTCTTCAGGGAGAAGGGAAGACTTCTTTATATGGCTTACAGA  343

seq1  GTCTTTCTGTAGCTTCTGGCCACTCATCGTCATCTCTGGGTGCTCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGTAGCTTCTGGCCACTCATCGTCATCTCTGGGTGCTCTCCCA  393

seq1  TTCTCTACTCCAGCATTTCCTTTCTTGGGACTCATTATGACCTTTCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACTCCAGCATTTCCTTTCTTGGGACTCATTATGACCTTTCTGGA  443

seq1  ACAGTTTGTAGCCCCGGCATCACCTAGCTAAGTCTCATCTATTCTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGTAGCCCCGGCATCACCTAGCTAAGTCTCATCTATTCTGTTGT  493

seq1  CTCTGGTATGGCATCTTCCGGAGCCTCACCAAAGCTCTCAGCCCAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTATGGCATCTTCCGGAGCCTCACCAAAGCTCTCAGCCCAGGTCA  543

seq1  AGAGACCATGCCCTGTGCCACCGCGCACACGGTGGCGCTTCTTCCCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCATGCCCTGTGCCACCGCGCACACGGTGGCGCTTCTTCCCATTG  593

seq1  TCCCCTGCTTCACTGTGCAGTGTTTTGCTACCCGGTTCCTATTCAAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGCTTCACTGTGCAGTGTTTTGCTACCCGGTTCCTATTCAAGATC  643

seq1  CTCAACTTTATGCAAACAGTGACATTGCCACAAACTAATGATTGTAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTTATGCAAACAGTGACATTGCCACAAACTAATGATTGTAGCTC  693

seq1  CAGAAGTTAGCACAGGCTCTGGAATGAGTGAACGCTGAAATCAATTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTAGCACAGGCTCTGGAATGAGTGAACGCTGAAATCAATTACAT  743

seq1  TCGGGAGAAAGGAACAGTGTTTAATTGTGTGTTGAAAAATAAGATTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGAAAGGAACAGTGTTTAATTGTGTGTTGAAAAATAAGATTGTCA  793

seq1  TACTTTACAAATGGGGACTGAACTGACAGGAATGATAGAAAAGGATAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACAAATGGGGACTGAACTGACAGGAATGATAGAAAAGGATAGTT  843

seq1  TATGAAAACATGCTACTAGAGCTTGGCTTGTGAACATTATCTTATTGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACATGCTACTAGAGCTTGGCTTGTGAACATTATCTTATTGAAT  893

seq1  TC  902
      ||
seq2  TC  895