BAC Information

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BAC

Clone NameB6Ng01-030M16
Chromosome13 (Build37)
Map Location 23,569,131 - 23,570,278
singlet/doubletsinglet
Overlap geneBtn2a2
Upstream geneV1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1
Downstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M16.bB6Ng01-030M16.g
ACCDH860588DH860589
length1,1281,019
definitionDH860588|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M16, 5' end.DH860589|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaatcagcttatcagccagaaatacacagtgaaaccatgtctt
gaaaagcaataacaaaaagatggggagagaaagtcaagagcagtgctagc
cagtgagagcatgactcaaaacaaatctcaacagttactaacccaagaac
acagaacttaatcttctgtatatatcacaagctcataaactggacatggt
tgtgcttgtctttaatcccagaactctggaggtggaggctggcctggtct
acatagtgagacctatcttgaagggggaagggcttgggggaaaggaagac
atcctgagcctaaggaacttgaactgctacctactctagtaaatccgatt
catgtggacctggctgctcagcatggaccgcaagcctcaagccattctta
ctgagcacagacatggaactcagaagtgtttattgtagggacgtctgagc
cagcttacatccagttcatcactatgattgtttcctctcatgtgtaggtc
tacagatatacactccagacacactatgtgatatttaaatctttggcttt
ggatatcaatggaccattagctcctacctatccacagctgtcacataggg
cttaccccagagctcttcagtccatttcctccatcttcggcctcaattca
tctttatctgtctccttcctctgtagttctcacttcttacatcctgatcc
accctgttgctcttgcctgatatccactgtgaccagagcagcatgttgaa
actccaagttttctgcccttctcacactttcttctcaggagagagctgta
ttacagcaatagtcccctaagactggctctacctaggcccatagttagaa
gaaatgatgtagtatttgaggactgggcctgaagtatgtgtgaaggtggc
agctggagatgctccatgtgatctgaaggacatggggtctagtctccaca
gatggtactgtgtagagagctattgcttcctacaggctctgagaaatggt
cttgtcttattagaatagccaccctcaggtattgtactcctgttgccctt
gtgatgctgacagttgacagggactgtcatcaaaccagcttaagatgtct
caggggcccatgaaagtcaacagaggac
gaattcttggactttctatcaggagacagctgtggctagaccacagcctg
taaaccactctaataaaccccattttatattccattctgatcttctaaag
aaccttctaaatcaaagtccatggagtttaagcaagaagaatgacagggg
caaaatttcaaagggttgctgagtgcagcaggaaacacaggccagaacta
tgcccagcagcctggagtgcttctgaaatggaaacataagggttctttgg
aaagtcagttgggtggtgtaaacacatgaaggagtggtttttttgaagtg
gacatgggtgaaagactaaagtagtctcatgaaggaatgtttagctaaag
cagacaccggagaaaggatgttttgttaaaataagaatgtgaaaggacat
gtgatgaaggatgtttttgttaacaatatgtatgtattggtctgtcttat
actgtatagttgagttatatttgttgggactctatagagagaaacgtacc
aaaaaacttttggtggtgtgttatatatactgttttgttgtttttgtggg
cttgagctgattggcagagtgatgtcagttgagacagatgtatgtgttga
gggaagacccatggaggacatgtgatgtttgaagggtataaataggactc
attggacagtgacagaggctgacgtgggcctgtttatagagctagctgta
cagagcttgtgggtcttggatcttcactgatcttcactttgctgaatgag
acacagctcataacttctcctgggattcctcttggtccctcctgcaggct
ggggcctggatcttcctattaggttgtgccgctgaagttttgggagtgaa
ttgagctgccactgctaatctgtaaactgacctgtcaatttccagacaca
cagactgaaattactcccaaagaaacttctaacaggtccactatctgctt
cctttcttttcactaccctgtgggtatgagtttaaaggatggttagcctt
tagacaccatctcctggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23569131_23570278
seq2: B6Ng01-030M16.b_44_1171

seq1  GAATTCAAAATCAGCTTATCAGCCAGAAATACACAGTGAAACCATGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCAGCTTATCAGCCAGAAATACACAGTGAAACCATGTCTT  50

seq1  GAAAAGCAATAACAAAAAGATGGGGAGAGAAAGTCAAGAGCAGTGCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAATAACAAAAAGATGGGGAGAGAAAGTCAAGAGCAGTGCTAGC  100

seq1  CAGTGAGAGCATGACTCAAAACAAATCTCAACAGTTACTAACCCAAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGCATGACTCAAAACAAATCTCAACAGTTACTAACCCAAGAAC  150

seq1  ACAGAACTTAATCTTCTGTATATATCACAAGCTCATAAACTGGACATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTAATCTTCTGTATATATCACAAGCTCATAAACTGGACATGGT  200

seq1  TGTGCTTGTCTTTAATCCCAGAACTCTGGAGGTGGAGGCTGGCCTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGTCTTTAATCCCAGAACTCTGGAGGTGGAGGCTGGCCTGGTCT  250

seq1  ACATAGTGAGACCTATCTTGAAGGGGGAAGGGCTTGGGGGAAAGGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGAGACCTATCTTGAAGGGGGAAGGGCTTGGGGGAAAGGAAGAC  300

seq1  ATCCTGAGCCTAAGGAACTTGAACTGCTACCTACTCTAGTAAATCCGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGCCTAAGGAACTTGAACTGCTACCTACTCTAGTAAATCCGATT  350

seq1  CATGTGGACCTGGCTGCTCAGCATGGACCGCAAGCCTCAAGCCATTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGACCTGGCTGCTCAGCATGGACCGCAAGCCTCAAGCCATTCTTA  400

seq1  CTGAGCACAGACATGGAACTCAGAAGTGTTTATTGTAGGGACGTCTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACAGACATGGAACTCAGAAGTGTTTATTGTAGGGACGTCTGAGC  450

seq1  CAGCTTACATCCAGTTCATCACTATGATTGTTTCCTCTCATGTGTAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTACATCCAGTTCATCACTATGATTGTTTCCTCTCATGTGTAGGTC  500

seq1  TACAGATATACACTCCAGACACACTATGTGATATTTAAATCTTTGGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATATACACTCCAGACACACTATGTGATATTTAAATCTTTGGCTTT  550

seq1  GGATATCAATGGACCATTAGCTCCTACCTATCCACAGCTGTCACATAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCAATGGACCATTAGCTCCTACCTATCCACAGCTGTCACATAGGG  600

seq1  CTTACCCCAGAGCTCTTCAGTCCATTTCCTCCATCTTCGGCCTCAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCCAGAGCTCTTCAGTCCATTTCCTCCATCTTCGGCCTCAATTCA  650

seq1  TCTTTATCTGTCTCCTTCCTCTGTAGTTCTCACTTCTTACATCCTGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTGTCTCCTTCCTCTGTAGTTCTCACTTCTTACATCCTGATCC  700

seq1  ACCCTGTTGCTCTTGCCTGATATCCACTGTGACCAGAGCAGCATGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTGCTCTTGCCTGATATCCACTGTGACCAGAGCAGCATGTTGAA  750

seq1  ACTCCAAGTTTTCTGCCCTTCTCACACTTTCTTCTCAGGAGAGAGCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGTTTTCTGCCCTTCTCACACTTTCTTCTCAGGAGAGAGCTGTA  800

seq1  TTACAGCAATAGTCCCCTAAGACTGGCTCTACCTAGGCCCATAGTTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAATAGTCCCCTAAGACTGGCTCTACCTAGGCCCATAGTTAGAA  850

seq1  GAAATGATGTAGTAATCTGAGGACTGGGCCTGAAGTATGTGTGAAGGTGG  900
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  GAAATGATGTAGT-ATTTGAGGACTGGGCCTGAAGTATGTGTGAAGGTGG  899

seq1  CAGCTGGAAGATGCTCCATGTGATCTGAAGGACATGGGGTCTAGTCTCCA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGCTGG-AGATGCTCCATGTGATCTGAAGGACATGGGGTCTAGTCTCC-  947

seq1  ACAGATGGTACTGTGTAGAGAGCTATGGCTTCCTTACAAGGCTCTGAGAA  1000
      |||||||||||||||||||||||||| |||||| ||| ||||||||||||
seq2  ACAGATGGTACTGTGTAGAGAGCTATTGCTTCC-TAC-AGGCTCTGAGAA  995

seq1  ATTGGTCTTGTCTTATATAGGAATAAGCCACCCTCAGGTATTGTAACTCC  1050
      | |||||||||||||| || |||| ||||||||||||||||||| |||||
seq2  A-TGGTCTTGTCTTAT-TA-GAAT-AGCCACCCTCAGGTATTGT-ACTCC  1040

seq1  CTGTGCCCCTGTGAATGCTGGACAGATGAACAGGGGACTGTCATCAGAAC  1100
         ||||| |||| ||||| ||||| || ||| ||||||||||||| |||
seq2  TGTTGCCCTTGTG-ATGCT-GACAGTTG-ACA-GGGACTGTCATCA-AAC  1085

seq1  CAAGCCTAAAGAAGGGTCTCAGGGGCCCAGTGAAAGTCACAGGAGGAC  1148
      ||   || ||||   |||||||||||||| |||||||||   ||||||
seq2  CA--GCTTAAGA--TGTCTCAGGGGCCCA-TGAAAGTCAACAGAGGAC  1128