BAC Information

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BAC

Clone NameB6Ng01-030M18
Chromosome13 (Build37)8 (Build37)
Map Location 25,264,758 - 25,265,621107,643,381 - 107,643,623
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
Downstream geneNrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M18.bB6Ng01-030M18.g
ACCDH860592DH860593
length1,025422
definitionDH860592|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M18, 5' end.DH860593|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,264,758 - 25,265,621)(107,643,381 - 107,643,623)
sequence
gaattctctggagtcagaagagatgtagtttagctcctcattcttcccag
actccttggccccaggtgtcttgagttaggtttccttagactctggtctg
tctttgtttcacagtcagtgatcttgaaaggatagtctgtactgtctttt
ctcagcctcctttagtgcctgcccctcttcttgctgttctttttaaaccc
tcgggaacttctgcctaccactgcagtgttgaatggctgaatttggtctt
aagctagcttctattcctaacccaagatattacatagacacttggtttta
tttaccaactatagtctcctttattagttaataattgtttttttttgagc
actttatacatgaacactataaatacttctctcttgttcctccctctcca
gctcctcctatagccccacaaattcatgatctttcctttaaatattagtt
ttatgtgcacaaaatatacccacatgtatgcacacatctatatataacct
actgagtccatttagctttgcttatgtgtgcatgtgtgtaaagctgacca
ctttggattggggaacctgtctggtgggagcttatccctgcagactgatc
ctccctcagtgggaactgactacctgtagctcttcatctaggggtgtggc
cacatggaattttcctggattatattggtgtgtcaactggtattgtcatt
atgctgatcttgttcagctgtgttttgagagttcatgggtgcagcttcct
atcgtatgtagaagacactatctcacaacagacttcttggtactctggga
attacagtctttctacttgcttccatgacttcccagtagccttaggatgt
attatagatgtaccagtcagtgttgataccccaacactcatgcagttctc
tgcattatggtcacctggtgagtctcctgtgatggtctccatctgatgcg
aaagaacttcttcaatgaggatgatggtatattcataaggatctccaata
cagttagaaattatgtgggctacta
ctgactacataagtaaagaaagcaatggcagaggtttaggcaccacatag
tctctttagacaaaaatggcacacccagctctctgtgctacagctttata
aagatgtgggtgagctgaatgtgtttaaagaagatcaagaagtaagtggt
gcacgcctttaatcccagcactcgggaggcagaggcaggtggatttctga
gttcgaggtcagcctggtctacaaaatgagttccaggacagccagggcta
tacagagaaaccctgtctcaaaaaacaaacaaacaaacaaacaaacaaac
aaaacgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagacgacgacgacgaaggagg
aggaggaggaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25264758_25265621
seq2: B6Ng01-030M18.b_47_908

seq1  GAATTCTCTGGAGTCAGAAGAGATGTAGTTTAGCTCCTCATTCTTCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGTCAGAAGAGATGTAGTTTAGCTCCTCATTCTTCCCAG  50

seq1  ACTCCTTGGCCCCAGGTGTCTTGAGTTAGGTTTCCTTAGACTCTGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGGCCCCAGGTGTCTTGAGTTAGGTTTCCTTAGACTCTGGTCTG  100

seq1  TCTTTGTTTCACAGTCAGTGATCTTGAAAGGATAGTCTGTACTGTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTCACAGTCAGTGATCTTGAAAGGATAGTCTGTACTGTCTTTT  150

seq1  CTCAGCCTCCTTTAGTGCCTGCCCCTCTTCTTGCTGTTCTTTTTAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCCTTTAGTGCCTGCCCCTCTTCTTGCTGTTCTTTTTAAACCC  200

seq1  TCGGGAACTTCTGCCTACCACTGCAGTGTTGAATGGCTGAATTTGGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAACTTCTGCCTACCACTGCAGTGTTGAATGGCTGAATTTGGTCTT  250

seq1  AAGCTAGCTTCTATTCCTAACCCAAGATATTACATAGACACTTGGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGCTTCTATTCCTAACCCAAGATATTACATAGACACTTGGTTTTA  300

seq1  TTTACCAACTATAGTCTCCTTTATTAGTTAATAATTGTTTTTTTTTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAACTATAGTCTCCTTTATTAGTTAATAATTGTTTTTTTTTGAGC  350

seq1  ACTTTATACATGAACACTATAAATACTTCTCTCTTGTTCCTCCCTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATACATGAACACTATAAATACTTCTCTCTTGTTCCTCCCTCTCCA  400

seq1  GCTCCTCCTATAGCCCCACAAATTCATGATCTTTCCTTTAAATATTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCTATAGCCCCACAAATTCATGATCTTTCCTTTAAATATTAGTT  450

seq1  TTATGTGCACAAAATATACCCACATGTATGCACACATCTATATATAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCACAAAATATACCCACATGTATGCACACATCTATATATAACCT  500

seq1  ACTGAGTCCATTTAGCTTTGCTTATGTGTGCATGTGTGTAAAGCTGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCCATTTAGCTTTGCTTATGTGTGCATGTGTGTAAAGCTGACCA  550

seq1  CTTTGGATTGGGGAACCTGTCTGGTGGGAGCTTATCCCTGCAGACTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTGGGGAACCTGTCTGGTGGGAGCTTATCCCTGCAGACTGATC  600

seq1  CTCCCTCAGTGGGAACTGACTACCTGTAGCTCTTCATCTAGGGGTGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCAGTGGGAACTGACTACCTGTAGCTCTTCATCTAGGGGTGTGGC  650

seq1  CACATGGAATTTTCCTGGATTATATTGGTGTGTCAACTGGTATTGTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAATTTTCCTGGATTATATTGGTGTGTCAACTGGTATTGTCATT  700

seq1  ATGCTGATCTTGTTCAGGCTGTGTTTTGAGAGTTCATGGGTGCAGCTTCC  750
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  ATGCTGATCTTGTTCA-GCTGTGTTTTGAGAGTTCATGGGTGCAGCTT-C  748

seq1  CTATCGTATGTAGAAGACACTATCTCACAACAGACTTCTTGGTACTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGTATGTAGAAGACACTATCTCACAACAGACTTCTTGGTACTCTGG  798

seq1  GAATTACAGTCTTTCTACTTGCTTCCATGACTTCCCAGTAGCCTTAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAGTCTTTCTACTTGCTTCCATGACTTCCCAGTAGCCTTAGGAT  848

seq1  GTATTATAGATGTA  864
      ||||||||||||||
seq2  GTATTATAGATGTA  862

seq1: chr8_107643381_107643623
seq2: B6Ng01-030M18.g_219_495 (reverse)

seq1  TCTTCCTCCTCCTCCTCCTCCTCCTC------------------------  26
      || |||||||||||||||||||||||                        
seq2  TCCTCCTCCTCCTCCTCCTCCTCCTCCTTCGTCGTCGTCGTCTTCTTCTT  50

seq1  ---------CTTCTATTTCTCCCTCTCCTCCTTCTCCTCCTTCTCCTCCT  67
               |||||  |||| | ||| || ||||| || ||||| || ||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  100

seq1  TCTCCTTTTTATTTTTTGGTTTTTTTGTTTGTTTGTTTTTGCTTTTGCTT  117
      ||| ||| || || || | ||| ||||||||||||||| |   |||| ||
seq2  TCTTCTTCTTCTTCTTCGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTT  150

seq1  TTT-AGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTTT  166
      ||| ||||||||||||||||| ||||| |||||||||||||||||| |||
seq2  TTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCATTTT  200

seq1  GTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCA  216
      ||||||||||||| |||||||||||||||||  |||||||||||||||| 
seq2  GTAGACCAGGCTGACCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCG  250

seq1  AGTGCTGGGATTAAAGGCATGCACCAC  243
      |||||||||||||||||| ||||||||
seq2  AGTGCTGGGATTAAAGGCGTGCACCAC  277