BAC Information

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BAC

Clone NameB6Ng01-031C03
Chromosome13 (Build37)
Map Location 26,033,121 - 26,172,774
singlet/doubletdoublet
Overlap genenone
Upstream geneGpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031C03.bB6Ng01-031C03.g
ACCDH860833DH860834
length1,1921,030
definitionDH860833|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C03, 5' end.DH860834|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,171,542 - 26,172,774)(26,033,121 - 26,034,158)
sequence
gaattcttcctgcagaaaaaggaaataattattctctccaatgatacact
ctaaacaaaagcattcacactcataaaggagcctttgacatgggaaaaat
agctttttaataattttgtagctcttgctttaagaatcatttctttgtga
tctgctcaagtttttttttctgaacctcctctagtctattagtacactga
aaaatgtttaatcgctgtattcagatttcaattcccatttaaccagcctt
cagttaaaatggaaagaggcagacccatttagtatacacaaagtaggaaa
taattgcgttggaaaaccccaaaacacacaaatcagaaccagctgttgcc
aagcaagtatggaaagctgtactctggactttccatggcctgcagcagcg
atgttatacaaacagcaagtccccacggtgtctcagcagctactcaggca
gtggaaagaattaggtatcaagctaaaggtttaccagatggagattcaat
cagtttcttttgtgcaaaaaaaaaaaaaatctttatctagaatgaatatt
taagaatagctacatttaattttgaaaattagcaacattttttagcatca
tttctgagatgaacaataagcactagggagactaagtggaagctgtatgc
ataaagcagaggacatgtgtaaataaacaagtataacctgaaaacagcca
actgagtgtaagtggcaagttcattatgggaaaacaaacaaataaacaga
aacattgttatattgggttgctgggctcaagattggagataacaaattgt
ttctctaataagaaatagacttgtatgcacatcattgtcttacaagttgg
tgctgccattcttgatatcagagccctggtgcggtggcccagagcaaaac
tcccaaaatgtgtactccatggtaagctgaattttgaactttctcttcca
ttttctaagtactttaacccccaccagtttcttctttgttgcttaaagtg
cattctgttccagtaatctgagcatgattgttcaagaattacagctgtcc
accttataggaaatcctatctagctccttcaagccccaccccaccctggc
aagcttctgattcttgtctcatgtgatttttattaagacaactgatgttc
attattgcgaaatagacatcgttggtgccgattcagggtaaa
gaattcaaccctttgggcttttctttatctcttttgtcaaagtctatatt
ttagatctgttataatggtgtttatctttaattccaaaaattgggaggca
gtgggagccagaggaaagcagatctctgtgatttcaaggccattctcgat
tctactcaacatagggccttctaggtcagccaggtttacttaatgagatc
ctgtcttatttttaaaaagtgtttgtgttttaaagaaaattgtttaaata
tctccatatcctgttatcattttcagctagctcaaagactagtatcagag
ttgcaagctgtttcagaatacagagatagtattcagattcttttggcaga
atggaaagctatatggtagattaaaatatgaagtgtctgcatattatata
accaaattgatgttacctatgatgtgtaaattgctctttttcagggtgca
atggatgggcaccctgtgatacccacttctgtagggcatgggggtcataa
aaaatgctctatatgagaagaaaaacaacatttttttctagacttgccta
caatctaggtcactggagaagccaaacccacaacatccaccacatgacag
aggatgaaagacagaaaaaaatattgctgagacttaggctttaaagtctc
ttggggatattgggaacttacaaagaagagccacagggatgattaaagag
ttgcaaaatggcatctctggggaaagactcaaagaacggagcttggttat
cttggaagtgagagcagtaagccatagtttcattacaacactaaaaatac
agaattggaaagactgggaatgagtatgcccgtcatttatcaccatgtgc
tcaagaacaggaagagattgggctagccatactgtgatttacatactgaa
agatggtaatcaactacctgggagagaagtttgcagagtggagatagcat
agccagatggtcagcttcaaacgaagttttgtttggaaacgataaagggt
ttgaaacttaaaaatagagtaggaaagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26171542_26172774
seq2: B6Ng01-031C03.b_45_1236 (reverse)

seq1  TTTACCCTGAATCTTGCAACACAAACCGAAAATGCTTATTCTTCTGCCAA  50
      |||||||||||||  ||       ||| |  |||  |||  |||      
seq2  TTTACCCTGAATC-GGC-------ACCAACGATGTCTAT--TTC-----G  35

seq1  CTATAATGAACATCAGTGTTGCTCTTAGAGTGAAAAATTTCACATGAGAC  100
      | |||||||||||||  |||| |||||     | |||  |||||||||||
seq2  CAATAATGAACATCA--GTTG-TCTTA-----ATAAAAATCACATGAGAC  77

seq1  AAGAAATCACGGAGGCCTGGGCAGGGGTGGGGTGGGGGCCTGTGAAGGAG  150
      ||| |||||  || || |  ||  |||||||||||||  || ||||||||
seq2  AAG-AATCA--GAAGCTT--GCCAGGGTGGGGTGGGG--CT-TGAAGGAG  119

seq1  CCTAGATAGGGAATTTCCCTATAAGGTTGGACAGCTGTAAATACCTTGAA  200
       |||||||||  |||| ||||||||| ||||||||||||| |  ||||||
seq2  -CTAGATAGG--ATTT-CCTATAAGG-TGGACAGCTGTAATT--CTTGAA  162

seq1  CAATCAATGGCTCAGATTACTGGAAACAGAATGCACTTTAAGCAACAAAG  250
      ||||||   |||||||||||||| ||||||||||||||||||||||||||
seq2  CAATCA--TGCTCAGATTACTGG-AACAGAATGCACTTTAAGCAACAAAG  209

seq1  AAGAAACTGGTGGGGGTTAAAGTACTTAGAAAATGGAAGAGAAAGTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGGTGGGGGTTAAAGTACTTAGAAAATGGAAGAGAAAGTTCAA  259

seq1  AATTCAGCTTACCATGGAGTACACATTTTGGGAGTTTTGCTCTGGGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCTTACCATGGAGTACACATTTTGGGAGTTTTGCTCTGGGCCAC  309

seq1  CGCACCAGGGCTCTGATATCAAGAATGGCAGCACCAACTTGTAAGACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCAGGGCTCTGATATCAAGAATGGCAGCACCAACTTGTAAGACAAT  359

seq1  GATGTGCATACAAGTCTATTTCTTATTAGAGAAACAATTTGTTATCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCATACAAGTCTATTTCTTATTAGAGAAACAATTTGTTATCTCCA  409

seq1  ATCTTGAGCCCAGCAACCCAATATAACAATGTTTCTGTTTATTTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGCCCAGCAACCCAATATAACAATGTTTCTGTTTATTTGTTTGT  459

seq1  TTTCCCATAATGAACTTGCCACTTACACTCAGTTGGCTGTTTTCAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATAATGAACTTGCCACTTACACTCAGTTGGCTGTTTTCAGGTTA  509

seq1  TACTTGTTTATTTACACATGTCCTCTGCTTTATGCATACAGCTTCCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTTATTTACACATGTCCTCTGCTTTATGCATACAGCTTCCACTT  559

seq1  AGTCTCCCTAGTGCTTATTGTTCATCTCAGAAATGATGCTAAAAAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCTAGTGCTTATTGTTCATCTCAGAAATGATGCTAAAAAATGTT  609

seq1  GCTAATTTTCAAAATTAAATGTAGCTATTCTTAAATATTCATTCTAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTTCAAAATTAAATGTAGCTATTCTTAAATATTCATTCTAGATA  659

seq1  AAGATTTTTTTTTTTTTTGCACAAAAGAAACTGATTGAATCTCCATCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTTTTTTTTTGCACAAAAGAAACTGATTGAATCTCCATCTGG  709

seq1  TAAACCTTTAGCTTGATACCTAATTCTTTCCACTGCCTGAGTAGCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTTAGCTTGATACCTAATTCTTTCCACTGCCTGAGTAGCTGCTG  759

seq1  AGACACCGTGGGGACTTGCTGTTTGTATAACATCGCTGCTGCAGGCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTGGGGACTTGCTGTTTGTATAACATCGCTGCTGCAGGCCATG  809

seq1  GAAAGTCCAGAGTACAGCTTTCCATACTTGCTTGGCAACAGCTGGTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCAGAGTACAGCTTTCCATACTTGCTTGGCAACAGCTGGTTCTG  859

seq1  ATTTGTGTGTTTTGGGGTTTTCCAACGCAATTATTTCCTACTTTGTGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGTTTTGGGGTTTTCCAACGCAATTATTTCCTACTTTGTGTAT  909

seq1  ACTAAATGGGTCTGCCTCTTTCCATTTTAACTGAAGGCTGGTTAAATGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGGGTCTGCCTCTTTCCATTTTAACTGAAGGCTGGTTAAATGGG  959

seq1  AATTGAAATCTGAATACAGCGATTAAACATTTTTCAGTGTACTAATAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAATCTGAATACAGCGATTAAACATTTTTCAGTGTACTAATAGAC  1009

seq1  TAGAGGAGGTTCAGAAAAAAAAACTTGAGCAGATCACAAAGAAATGATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGGTTCAGAAAAAAAAACTTGAGCAGATCACAAAGAAATGATTC  1059

seq1  TTAAAGCAAGAGCTACAAAATTATTAAAAAGCTATTTTTCCCATGTCAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCAAGAGCTACAAAATTATTAAAAAGCTATTTTTCCCATGTCAAA  1109

seq1  GGCTCCTTTATGAGTGTGAATGCTTTTGTTTAGAGTGTATCATTGGAGAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTTATGAGTGTGAATGCTTTTGTTTAGAGTGTATCATTGGAGAG  1159

seq1  AATAATTATTTCCTTTTTCTGCAGGAAGAATTC  1233
      |||||||||||||||||||||||||||||||||
seq2  AATAATTATTTCCTTTTTCTGCAGGAAGAATTC  1192

seq1: chr13_26033121_26034158
seq2: B6Ng01-031C03.g_66_1095

seq1  GAATTCAACCCTTTGGGCTTTTCTTTATCTCTTTTGTCAAAGTCTATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCTTTGGGCTTTTCTTTATCTCTTTTGTCAAAGTCTATATT  50

seq1  TTAGATCTGTTATAATGGTGTTTATCTTTAATTCCAAAAATTGGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCTGTTATAATGGTGTTTATCTTTAATTCCAAAAATTGGGAGGCA  100

seq1  GTGGGAGCCAGAGGAAAGCAGATCTCTGTGATTTCAAGGCCATTCTCGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCCAGAGGAAAGCAGATCTCTGTGATTTCAAGGCCATTCTCGAT  150

seq1  TCTACTCAACATAGGGCCTTCTAGGTCAGCCAGGTTTACTTAATGAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCAACATAGGGCCTTCTAGGTCAGCCAGGTTTACTTAATGAGATC  200

seq1  CTGTCTTATTTTTAAAAAGTGTTTGTGTTTTAAAGAAAATTGTTTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTATTTTTAAAAAGTGTTTGTGTTTTAAAGAAAATTGTTTAAATA  250

seq1  TCTCCATATCCTGTTATCATTTTCAGCTAGCTCAAAGACTAGTATCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATCCTGTTATCATTTTCAGCTAGCTCAAAGACTAGTATCAGAG  300

seq1  TTGCAAGCTGTTTCAGAATACAGAGATAGTATTCAGATTCTTTTGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCTGTTTCAGAATACAGAGATAGTATTCAGATTCTTTTGGCAGA  350

seq1  ATGGAAAGCTATATGGTAGATTAAAATATGAAGTGTCTGCATATTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGCTATATGGTAGATTAAAATATGAAGTGTCTGCATATTATATA  400

seq1  ACCAAATTGATGTTACCTATGATGTGTAAATTGCTCTTTTTCAGGGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTGATGTTACCTATGATGTGTAAATTGCTCTTTTTCAGGGTGCA  450

seq1  ATGGATGGGCACCCTGTGATACCCACTTCTGTAGGGCATGGGGGTCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGGCACCCTGTGATACCCACTTCTGTAGGGCATGGGGGTCATAA  500

seq1  AAAATGCTCTATATGAGAAGAAAAACAACATTTTTTTCTAGACTTGCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTCTATATGAGAAGAAAAACAACATTTTTTTCTAGACTTGCCTA  550

seq1  CAATCTAGGTCACTGGAGAAGCCAAACCCACAACATCCACCACATGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGGTCACTGGAGAAGCCAAACCCACAACATCCACCACATGACAG  600

seq1  AGGATGAAAGACAGAAAAAAATATTGCTGAGACTTAGGCTTTAAAGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAAGACAGAAAAAAATATTGCTGAGACTTAGGCTTTAAAGTCTC  650

seq1  TTGGGGATATTGGGAACTTACAAAGAAGAGCCACAGGGATGATTAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATATTGGGAACTTACAAAGAAGAGCCACAGGGATGATTAAAGAG  700

seq1  TTGCAAAATGGCATCTCTGGGGAAAGACTCAAAGAACGGAGCTTGGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAATGGCATCTCTGGGGAAAGACTCAAAGAACGGAGCTTGGTTAT  750

seq1  CTTGGAAGTGAGAGCAGTAAGCCATAGTTTCATTACAACACTAAAAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGTGAGAGCAGTAAGCCATAGTTTCATTACAACACTAAAAATAC  800

seq1  AGAATTGGAAAGACTGGGAATGAGTATGCCCGTCATTTATCACCATGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGAAAGACTGGGAATGAGTATGCCCGTCATTTATCACCATGTGC  850

seq1  TCAAGAACAGGAAGAGATTGGGCTAGCCATACTGTGATTTACATACTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACAGGAAGAGATTGGGCTAGCCATACTGTGATTTACATACTGAA  900

seq1  AGATGGTAATCAAACTACCTGGGAGGAGAAGTTTGCAGAAGTTGGAGATA  950
      ||||||||||| |||||||||||| ||||||||||||||   ||||||||
seq2  AGATGGTAATC-AACTACCTGGGA-GAGAAGTTTGCAGA--GTGGAGATA  946

seq1  GCATAGCCAGATGGTCAAGCTTCAAACGAAGTTTTTGTTTGGAAACGATA  1000
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  GCATAGCCAGATGGTC-AGCTTCAAACGAAG-TTTTGTTTGGAAACGATA  994

seq1  AAGGGTTTGGAAACTTAAAAAATAGAGTAGGAAAGCAT  1038
      |||||||| ||||||| |||||||||||||||||||||
seq2  AAGGGTTT-GAAACTT-AAAAATAGAGTAGGAAAGCAT  1030