BAC Information

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BAC

Clone NameB6Ng01-031J16
Chromosome13 (Build37)
Map Location 21,634,336 - 21,635,325
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366
Downstream geneOlfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031J16.bB6Ng01-031J16.g
ACCDH861168DH861169
length1,240980
definitionDH861168|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J16, 5' end.DH861169|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaggccagt
ttgctgattggcctcagggcagttggcttcaaggtccgccctatgcggag
tccccgccctgcgtagtgcgtcagcaatgcgcagagagatgcgcagagag
gcagtgcgcagagaggcagtgcgcagactcattcattcccagagaggaac
aaaggaaaatacaacaggcatttccggtctttgaaggagccgagggtggg
cgtgtccacgctccggtagaatacttacaaattaaagaaattgccgagtc
ggtccgtaaatacggaaccaatgctaattttaccttggtgcagttagaca
ggctcgctggcatggcactaactcctgccgactggcaaacggttgtaaaa
gccgctctccctagtatgggcaaatatatggaatggagagcgctttggca
cgaagctgcacaagcgcaggcccgagcaaacgcagctgctttgactccag
agcagagagattggacttttgacttgttaacgggtcagggagcttattct
gctgatcagacaaactaccattggggagcttatgcccagatttcttccac
ggctattagggcctggaagcgctctctcgagcacgtgaaaccactggtca
gttaacaaagataatccagggacctcaggaatccttctcagattttgtgg
ccagaatgacagaggcagcagagcgtatttttggagagtcagagcaagct
gcgcctctgatagaacagctaatctatgagcaagccacaaaggagtgccg
agcggccatagccccagaaagaacaaaggcttacaagactggctcagggt
ctgtcgagagcttggggactcttcaccaatgcagcttagcggcgcatctt
catctcagaacgctcatgggcagatgatcagagacagtttattgcgaaag
ctgggcattttagaagattgcaggctcagataaacaggaggactctcact
ctttgctctatttggcaagggttatcatagagctgaacaatgtcctctgg
aggatataggcaagtcctccccactgatgtcatactgtgtgcaaccgact
cggtctggtcaggccttgattggaccggttcggaccgagcttagacgaaa
caggtactcggccctatctcatagtcatagtatttcgcag
gaattctacaggtggttattaggtaccgactataggttatacaaggcctt
acctacagtctgaacttgtcttccttgtccaggaagtgacatatattcgt
cctgattttccaaatctgctcacttcccttgttcagttccatgctcactt
accaggcgatcatatgatttctttgagtgaattaacttcgaagtttcacg
tggaggtaatgaaaaatgcaaaatgtgagactgtttccctttcctcagaa
ggcacacagttgagggaagggacagtttgtaagcaggtcacaaaaggtgc
agggtgaatgtgagtgactaaaggacttctccatattaaggctcacaacc
cctttgagccctgtggggacccaatcttgatcaaagtccccgaactccag
caatcatgacttcatctcctttgtggtttcccaattgtaactgtagggac
aatactatggaagatgattccccagggagacccagagatagcatctagag
attgtttctatgcttccaagaatgctatagcttgtctctcttccccctca
aacaacaataatcacaacaacttgaggaatttcttctttagtagagttga
tcagtttccctaaatgtaggtttctatgttccatgattgaacattccatt
agcattatcttcctccagcttacaaatgcctgatattcaaggacccattt
tgtgacaaaagagatgaagtaatgaatatgtagccagaaatcacatattc
atcttattttctattccatagtactagcactaatgttatcatggatagca
aggccttatagctcagtgcataggttttcctgggctgataccaaagtttt
ggaaatgtcctattttaaaaatctgtataatacatggggaagatgaacag
ttttgtgggacatcttttgttgtttttgttttgttttttgagacaggttc
tcttgtatagctcgactgtctggaactcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21634336_21635325
seq2: B6Ng01-031J16.g_69_1047

seq1  GAATTCTACAGGTGGTTATTAGGTACCGACTATAGGTTATACAAGGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGGTGGTTATTAGGTACCGACTATAGGTTATACAAGGCCTT  50

seq1  ACCTACAGTCTGAACTTGTCTTCCTTGTCCAGGAAGTGACATATATTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGTCTGAACTTGTCTTCCTTGTCCAGGAAGTGACATATATTCGT  100

seq1  CCTGATTTTCCAAATCTGCTCACTTCCCTTGTTCAGTTCCATGCTCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTTCCAAATCTGCTCACTTCCCTTGTTCAGTTCCATGCTCACTT  150

seq1  ACCAGGCGATCATATGATTTCTTTGAGTGAATTAACTTCGAAGTTTCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCGATCATATGATTTCTTTGAGTGAATTAACTTCGAAGTTTCACG  200

seq1  TGGAGGTAATGAAAAATGCAAAATGTGAGACTGTTTCCCTTTCCTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTAATGAAAAATGCAAAATGTGAGACTGTTTCCCTTTCCTCAGAA  250

seq1  GGCACACAGTTGAGGGAAGGGACAGTTTGTAAGCAGGTCACAAAAGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAGTTGAGGGAAGGGACAGTTTGTAAGCAGGTCACAAAAGGTGC  300

seq1  AGGGTGAATGTGAGTGACTAAAGGACTTCTCCATATTAAGGCTCACAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAATGTGAGTGACTAAAGGACTTCTCCATATTAAGGCTCACAACC  350

seq1  CCTTTGAGCCCTGTGGGGACCCAATCTTGATCAAAGTCCCCGAACTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGCCCTGTGGGGACCCAATCTTGATCAAAGTCCCCGAACTCCAG  400

seq1  CAATCATGACTTCATCTCCTTTGTGGTTTCCCAATTGTAACTGTAGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATGACTTCATCTCCTTTGTGGTTTCCCAATTGTAACTGTAGGGAC  450

seq1  AATACTATGGAAGATGATTCCCCAGGGAGACCCAGAGATAGCATCTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATGGAAGATGATTCCCCAGGGAGACCCAGAGATAGCATCTAGAG  500

seq1  ATTGTTTCTATGCTTCCAAGAATGCTATAGCTTGTCTCTCTTCCCCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTATGCTTCCAAGAATGCTATAGCTTGTCTCTCTTCCCCCTCA  550

seq1  AACAACAATAATCACAACAACTTGAGGAATTTCTTCTTTAGTAGAGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATAATCACAACAACTTGAGGAATTTCTTCTTTAGTAGAGTTGA  600

seq1  TCAGTTTCCCTAAATGTAGG-TTCTATGTTCCATGATTGAACATTCCATT  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGTTTCCCTAAATGTAGGTTTCTATGTTCCATGATTGAACATTCCATT  650

seq1  AGCATTATCTTCCTCCAGCTTACAAATGCCTGATATTCAAGGACCCATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATCTTCCTCCAGCTTACAAATGCCTGATATTCAAGGACCCATTT  700

seq1  TGTGACAAAGGAGATGAAGTAATGAATATGTAGCCAGAAATCACATATTT  749
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGACAAAAGAGATGAAGTAATGAATATGTAGCCAGAAATCACATA-TT  749

seq1  CATCTTATTTTCTATTCCATAGTACTAGCACTAATGTAATCATGGATAAG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  CATCTTATTTTCTATTCCATAGTACTAGCACTAATGTTATCATGGAT-AG  798

seq1  CAAGGCCTTATAGGCTCAGTGCATAGGTTTTCCTGGGGCTGATACCCAAG  849
      |||||||||||| ||||||||||||||||||||| ||||||||| |||| 
seq2  CAAGGCCTTATA-GCTCAGTGCATAGGTTTTCCT-GGGCTGATA-CCAAA  845

seq1  GTTTTGGAAATGTTCTA-TTTAACATTCTGTAT-ATACATGGGGAAGATG  897
      ||||||||||||| ||| ||||| | ||||||| ||||||||||||||||
seq2  GTTTTGGAAATGTCCTATTTTAAAAATCTGTATAATACATGGGGAAGATG  895

seq1  AACAGTTTGTGTGGGACATTCTTTTTTGTTGTTTTTGTTTTTGTTTTTTT  947
      |||||||| |||||||||   | ||||||||||||||||||   ||||||
seq2  AACAGTTT-TGTGGGACA---TCTTTTGTTGTTTTTGTTTT--GTTTTTT  939

seq1  GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCA  990
      |||||||| | ||| |||||||| | | |||| ||||||||||
seq2  GAGACAGGTTCTCT-TGTATAGCTC-GACTGT-CTGGAACTCA  979