BAC Information

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BAC

Clone NameB6Ng01-031L04
Chromosome13 (Build37)
Map Location 117,982,435 - 118,111,293
singlet/doubletdoublet
Overlap geneEmb
Upstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
Downstream geneEG623365, LOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031L04.bB6Ng01-031L04.g
ACCDH861239DH861240
length1,116852
definitionDH861239|Mus musculus domesticus DNA, BAC clone: B6Ng01-031L04, 5' end.DH861240|Mus musculus domesticus DNA, BAC clone: B6Ng01-031L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,110,147 - 118,111,293)(117,982,435 - 117,983,286)
sequence
gaattcttcaaaagcatggatataatttatggttttagttacatttttca
tagtttttatttttctgtttgcttctctaactttatttctttcctagcag
gctttcaacattaaggatcatatgttataaattttatataatgtacatat
atatatgacatatgggattctatcacaaccatgtaatccgtagtaaatta
ataaagaatgagaaactattgtttgccgaaataacaacaagaatatttct
ggcaaggtttgaactaactcaacgtgagtcatcaataataaattccttcc
tttttttcctcttgtctcctaaagttccattgcaatcctcagagtctacc
taagttatttcttctgggcaattctctattgattggaacagttgtcaaag
cttcaggtatcacttcttgtttgaagaggcgaggaagattatatttcaac
atcccaacaaaggtctcttcacaaacttagatttggtattttatatttaa
taaggatataagtgtgatataaatatattagctcaagcatttgggtaaag
ctggttctacataagctctgtgagtttgatttctgttcctatgataaatg
ctacaacaaaatgtaactcgggtaggaaagagtttatttcagctcacaga
ttcagcaagggaagtggtggcaaaagtgcaagggtggaatttagaggcag
aaactgaagcacaaaccatagaggcatgctgctaactgacttgccccaga
ctcattcacacctgcctttcttatcaagtctcttgaggtaatcctactcc
caacgggctgagtcctccttcatcaattatcaactaagacaatgcacaca
caaccatgtccatggctaatctgatggaggcaattcaattaagtttcttt
tgtcaacttcacaaacacctcagtgttgaagcatagttttctgtctcaga
tgttatctcaaactatgtatacatccaacttttttttttacttttttgtt
ttgttttgttgttttttcgagacaggttctcttgtgtagcctgctgtctg
actcatttgtagacagtgggcctcgactcagaaatccacctgcctggctc
cagttctgggataaag
gaattcactttgcctttcctgtggtttggatctcctgctcacggcctcca
acttcctcttactcaatttaaagcctcttttgcctcagtgaatcagcagg
tcaggtggatgagacagggtaaaggcacagccatgagagacggagtctcc
cacctgcagcctgatggggggaacctgactccctggaatgtcctccttca
tcatcttgacaattcccgcccccacggcattccacttaatttgatttact
ttgattttgtggaagacattctccagtagatcctcagggaaaagattctt
gaaatatacagttttttagatagttcttgatttaatatgtttttatttgg
tcttcatattaatagacatttcagtagggccaagggaggaaatatttttt
tctttcagaatgttggagccaggtttttttgtttgtttgtttttttgttt
tgtttgtttttttttttttttctgtttagaaacttgggaggtgctggtca
tacctgacttaacatacaatagctagaggcaggaggattgttgtgacctc
aaggccagcctgggttacatagtgagatctatcctcgtctggtctacaga
gttaagagtgtctcaaaaagcaaataaggagccaagcgtagtgggacaca
cctttaataccagcatctgggaggcagaggcaggtagatctgtataacct
caaggctagcctggtctacatgccaagttccagcacagccaggactaagt
agagagtccttgtctgagaaaaagcaaacaaagttgcagccattttaaat
ttcttatgatgtcactatctttccttccttctttccttccttccttcctt
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118110147_118111293
seq2: B6Ng01-031L04.b_43_1158 (reverse)

seq1  CTTTAATCCCAGAACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGA  50
      |||| |||||||||||  |||| |  ||||||||||||||||||| ||||
seq2  CTTT-ATCCCAGAACT--GGAGCC--AGGCAGGTGGATTTCTGAG-TCGA  44

seq1  GGCCAACCTGGTCTACAAAATGAGTTCCAGGACAGCCAGGGCTACACAGA  100
      |||| ||   |||||| ||||||||  || ||||||   ||||||||| |
seq2  GGCCCAC--TGTCTAC-AAATGAGT--CA-GACAGC--AGGCTACACA-A  85

seq1  GAAACCCTGTCTCGAAAAAAACAAACAAAAACAAAAACAAAAAAAAGTAA  150
      || | ||||||||| |||||||||   ||||||||   | |||||||| |
seq2  GAGAACCTGTCTCG-AAAAAACAA--CAAAACAAA---ACAAAAAAGT-A  128

seq1  AAAAAAAAAGTTGGATTGTATTACATAGTTTGAGATTAACATCTTGGAGA  200
      ||||||||||||||| |||| |||||||||||||| ||||||||  ||||
seq2  AAAAAAAAAGTTGGA-TGTA-TACATAGTTTGAGA-TAACATCT--GAGA  173

seq1  CAAGAAAAACTTATGCTTCAACACTGAGGTGTTTGTGAAGTTGACAAAAG  250
      | ||||||   |||||||||||||||||||||||||||||||||||||||
seq2  C-AGAAAA--CTATGCTTCAACACTGAGGTGTTTGTGAAGTTGACAAAAG  220

seq1  AAACCTTAATTGAATTGCCTCCATCAGATTAGCCATGGACATGGTTGTGT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAA-CTTAATTGAATTGCCTCCATCAGATTAGCCATGGACATGGTTGTGT  269

seq1  GTGCATTGTCTTAGTTGATAATTGATGAAGGAGGACTCAGCCCGTTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTGTCTTAGTTGATAATTGATGAAGGAGGACTCAGCCCGTTGGGA  319

seq1  GTAGGATTACCTCAAGAGACTTGATAAGAAAGGCAGGTGTGAATGAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTACCTCAAGAGACTTGATAAGAAAGGCAGGTGTGAATGAGTCT  369

seq1  GGGGCAAGTCAGTTAGCAGCATGCCTCTATGGTTTGTGCTTCAGTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGTCAGTTAGCAGCATGCCTCTATGGTTTGTGCTTCAGTTTCTG  419

seq1  CCTCTAAATTCCACCCTTGCACTTTTGCCACCACTTCCCTTGCTGAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAATTCCACCCTTGCACTTTTGCCACCACTTCCCTTGCTGAATCT  469

seq1  GTGAGCTGAAATAAACTCTTTCCTACCCGAGTTACATTTTGTTGTAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGAAATAAACTCTTTCCTACCCGAGTTACATTTTGTTGTAGCAT  519

seq1  TTATCATAGGAACAGAAATCAAACTCACAGAGCTTATGTAGAACCAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATAGGAACAGAAATCAAACTCACAGAGCTTATGTAGAACCAGCTT  569

seq1  TACCCAAATGCTTGAGCTAATATATTTATATCACACTTATATCCTTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAATGCTTGAGCTAATATATTTATATCACACTTATATCCTTATTA  619

seq1  AATATAAAATACCAAATCTAAGTTTGTGAAGAGACCTTTGTTGGGATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAATACCAAATCTAAGTTTGTGAAGAGACCTTTGTTGGGATGTT  669

seq1  GAAATATAATCTTCCTCGCCTCTTCAAACAAGAAGTGATACCTGAAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAATCTTCCTCGCCTCTTCAAACAAGAAGTGATACCTGAAGCTT  719

seq1  TGACAACTGTTCCAATCAATAGAGAATTGCCCAGAAGAAATAACTTAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTGTTCCAATCAATAGAGAATTGCCCAGAAGAAATAACTTAGGT  769

seq1  AGACTCTGAGGATTGCAATGGAACTTTAGGAGACAAGAGGAAAAAAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGAGGATTGCAATGGAACTTTAGGAGACAAGAGGAAAAAAAGGA  819

seq1  AGGAATTTATTATTGATGACTCACGTTGAGTTAGTTCAAACCTTGCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTATTATTGATGACTCACGTTGAGTTAGTTCAAACCTTGCCAGA  869

seq1  AATATTCTTGTTGTTATTTCGGCAAACAATAGTTTCTCATTCTTTATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTTGTTGTTATTTCGGCAAACAATAGTTTCTCATTCTTTATTAA  919

seq1  TTTACTACGGATTACATGGTTGTGATAGAATCCCATATGTCATATATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACGGATTACATGGTTGTGATAGAATCCCATATGTCATATATATA  969

seq1  TGTACATTATATAAAATTTATAACATATGATCCTTAATGTTGAAAGCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTATATAAAATTTATAACATATGATCCTTAATGTTGAAAGCCTG  1019

seq1  CTAGGAAAGAAATAAAGTTAGAGAAGCAAACAGAAAAATAAAAACTATGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAAGAAATAAAGTTAGAGAAGCAAACAGAAAAATAAAAACTATGA  1069

seq1  AAAATGTAACTAAAACCATAAATTATATCCATGCTTTTGAAGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAACTAAAACCATAAATTATATCCATGCTTTTGAAGAATTC  1116

seq1: chr13_117982435_117983286
seq2: B6Ng01-031L04.g_66_917

seq1  GAATTCACTTTGCCTTTCCTGTGGTTTGGATCTCCTGCTCACGGCCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGCCTTTCCTGTGGTTTGGATCTCCTGCTCACGGCCTCCA  50

seq1  ACTTCCTCTTACTCAATTTAAAGCCTCTTTTGCCTCAGTGAATCAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCTTACTCAATTTAAAGCCTCTTTTGCCTCAGTGAATCAGCAGG  100

seq1  TCAGGTGGATGAGACAGGGTAAAGGCACAGCCATGAGAGACGGAGTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGATGAGACAGGGTAAAGGCACAGCCATGAGAGACGGAGTCTCC  150

seq1  CACCTGCAGCCTGATGGGGGGAACCTGACTCCCTGGAATGTCCTCCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCAGCCTGATGGGGGGAACCTGACTCCCTGGAATGTCCTCCTTCA  200

seq1  TCATCTTGACAATTCCCGCCCCCACGGCATTCCACTTAATTTGATTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGACAATTCCCGCCCCCACGGCATTCCACTTAATTTGATTTACT  250

seq1  TTGATTTTGTGGAAGACATTCTCCAGTAGATCCTCAGGGAAAAGATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTGTGGAAGACATTCTCCAGTAGATCCTCAGGGAAAAGATTCTT  300

seq1  GAAATATACAGTTTTTTAGATAGTTCTTGATTTAATATGTTTTTATTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATACAGTTTTTTAGATAGTTCTTGATTTAATATGTTTTTATTTGG  350

seq1  TCTTCATATTAATAGACATTTCAGTAGGGCCAAGGGAGGAAATATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATTAATAGACATTTCAGTAGGGCCAAGGGAGGAAATATTTTTT  400

seq1  TCTTTCAGAATGTTGGAGCCAGGTTTTTTTGTTTGTTTGTTTTTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGAATGTTGGAGCCAGGTTTTTTTGTTTGTTTGTTTTTTTGTTT  450

seq1  TGTTTGTTTGTTTTTTTTTTTCTGTTTAGAAACTTGGGAGGTGCTGGTCA  500
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTTTTTTTTTTCTGTTTAGAAACTTGGGAGGTGCTGGTCA  500

seq1  TACCTGACTTAACATACAATAGCTAGAGGCAGGAGGATTGTTGTGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGACTTAACATACAATAGCTAGAGGCAGGAGGATTGTTGTGACCTC  550

seq1  AAGGCCAGCCTGGGTTACATAGTGAGATCTATCCTCGTCTGGTCTACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCCTGGGTTACATAGTGAGATCTATCCTCGTCTGGTCTACAGA  600

seq1  GTTAAGAGTGTCTCAAAAAGCAAATAAGGAGCCAAGCGTAGTGGGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGTGTCTCAAAAAGCAAATAAGGAGCCAAGCGTAGTGGGACACA  650

seq1  CCTTTAATACCAGCATCTGGGAGGCAGAGGCAGGTAGATCTGTATAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATACCAGCATCTGGGAGGCAGAGGCAGGTAGATCTGTATAACCT  700

seq1  CAAGGCTAGCCTGGTCTACATGCCAAGTTCCAGCACAGCCAGGACTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTAGCCTGGTCTACATGCCAAGTTCCAGCACAGCCAGGACTAAGT  750

seq1  AGAGAGTCCTTGTCTGAGAAAAAGCAAACAAAGTTGCAGCCATTTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCCTTGTCTGAGAAAAAGCAAACAAAGTTGCAGCCATTTTAAAT  800

seq1  TTCTTATGATGTCACTATCTTTCCTTCCTTCTTTCCTTCCTTCCTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGATGTCACTATCTTTCCTTCCTTCTTTCCTTCCTTCCTTCCTT  850

seq1  CC  852
      ||
seq2  CC  852