BAC Information

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BAC

Clone NameB6Ng01-031P15
Chromosome13 (Build37)
Map Location 6,221,799 - 6,305,134
singlet/doubletdoublet
Overlap genenone
Upstream gene1700016G22Rik, Klf6, LOC100039388
Downstream geneLOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031P15.bB6Ng01-031P15.g
ACCDH861443DH861444
length9501,114
definitionDH861443|Mus musculus domesticus DNA, BAC clone: B6Ng01-031P15, 5' end.DH861444|Mus musculus domesticus DNA, BAC clone: B6Ng01-031P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,304,531 - 6,305,134)(6,221,799 - 6,222,947)
sequence
gaattctcttccccccacaccaagagtgttgtcacagctaagttttcttt
ttgaaatcctgtttcttgaaagactctcccatggtatctgctcagattgt
gctcactgctctcaggcttagtcagagaagattcttgatgtagttaatgc
agattcataactcttcatagtgctgcaaacaagcagctggaatgttttat
ccgtgatgggacaatcgtatcatcctatccccacccaaggcttctacatt
gtagaagtagaagaaagaatgtaaagccagagaatggtatatactgtgaa
tggctgtcttctgaataggacatgactgttacacacacacacacacacac
acacacacacacacacacacacacactcaagcagctctgcttatttgtgt
gagacctgtgcctcatccagacaggcaaatgctctagcatggacaagtaa
gtggctccaggggctgtggcccaagctctggagctattgccagttgatag
ctgctgataagtaacaatcatttttttttcaagtgggatgtgtcattatg
aggttgaccatgccctagtagatggcctcacatccttaaacatgggcagc
attaattggatgcactgtgttctaataatagtaataagaacaaaggttac
aagattggtgggaaatgacctgggaagagttggagcatagtaatgaaagc
atcaaaacaaaggtgctcacttggattttaaaattggtaaacacagcttc
acctagtattggagaattctactctaaaaagttgaacctatgaaatatct
aatagataaataacttaaataatatacacagaaaaataattctcagccta
tgaacatattctacaaatgtaatattcaaattttccattttacagacagg
tttctgattgacatacttagaataggattagagaaaagatctaaatgaat


gaattccaggtgcaggtcttggaacaataagatctgggatgaggcaggta
cttatataattgccttcttcctatgaaataagtcattcatgagggacagt
gatagtcttcagcaaataagagtcagaagaggagttgaagtggctagagg
gaagaattcagtaggacttgggacacagttagtggaaaatgtaaactttt
ctacccatctcctttgttcttgggctacctctttcaaagccaaacatgta
agtaaactgtaaattcatgagacgccatgagcagtcacatagagtctgga
aagcagcattagattcgagttatcatggctctgtgatatcactaggtaag
atttgtgtttttaataaatacatcaaaccggcacacatttcttcccgtta
aaaataaagaattctgatattttttaaaaatcccaaagaatcggtcaggt
agttcaaacagtcatgttgcttttgctgtcttaaccactgttccattgct
gtgaagagacactatgaccatggcaactcctgtaaagaaagcatttttga
ggcttatttgtagttgcagacatttagtcctttattatcatggtaggaaa
taaggtggcacacaggcagacatggtgttggaaaagtagctaagagctat
aatctgaaccactacccaagacagagactcgaaacttggcatgggttttt
gaacgcttaaagctctccccctcctgtgacattctttctccaacaaggcc
acacttcctaatcctttcaaatagttccattgtttggtaactaagcattc
aaatattttgactctatggggctgttcttatttaaaccaatacatgacca
taattcgatgtcatggcagcaaaaatgcagggatgccctcagtctgggtc
atgaatgttagatactaatcagattctgactagagaaaatcctttactag
tgtttgtctctatgaatgcatcattaatggtatctatggtatctcttagg
cgggatatatttaacaccttctactcagataacagcttggtccagacttc
cctactaggactactgcaatacattccagtcagatctgttaacgttcagg
taatgctatgaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6304531_6305134
seq2: B6Ng01-031P15.b_49_652 (reverse)

seq1  TAATGCTGCCCATGTTTAAGGATGTGAGGCCATCTACTAGGGCATGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGCCCATGTTTAAGGATGTGAGGCCATCTACTAGGGCATGGTCA  50

seq1  ACCTCATAATGACACATCCCACTTGAAAAAAAAATGATTGTTACTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATAATGACACATCCCACTTGAAAAAAAAATGATTGTTACTTATCA  100

seq1  GCAGCTATCAACTGGCAATAGCTCCAGAGCTTGGGCCACAGCCCCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTATCAACTGGCAATAGCTCCAGAGCTTGGGCCACAGCCCCTGGAG  150

seq1  CCACTTACTTGTCCATGCTAGAGCATTTGCCTGTCTGGATGAGGCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACTTGTCCATGCTAGAGCATTTGCCTGTCTGGATGAGGCACAGG  200

seq1  TCTCACACAAATAAGCAGAGCTGCTTGAGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACAAATAAGCAGAGCTGCTTGAGTGTGTGTGTGTGTGTGTGTGT  250

seq1  GTGTGTGTGTGTGTGTGTGTGTGTAACAGTCATGTCCTATTCAGAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTAACAGTCATGTCCTATTCAGAAGACA  300

seq1  GCCATTCACAGTATATACCATTCTCTGGCTTTACATTCTTTCTTCTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCACAGTATATACCATTCTCTGGCTTTACATTCTTTCTTCTACTT  350

seq1  CTACAATGTAGAAGCCTTGGGTGGGGATAGGATGATACGATTGTCCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATGTAGAAGCCTTGGGTGGGGATAGGATGATACGATTGTCCCATC  400

seq1  ACGGATAAAACATTCCAGCTGCTTGTTTGCAGCACTATGAAGAGTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATAAAACATTCCAGCTGCTTGTTTGCAGCACTATGAAGAGTTATGA  450

seq1  ATCTGCATTAACTACATCAAGAATCTTCTCTGACTAAGCCTGAGAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATTAACTACATCAAGAATCTTCTCTGACTAAGCCTGAGAGCAGT  500

seq1  GAGCACAATCTGAGCAGATACCATGGGAGAGTCTTTCAAGAAACAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAATCTGAGCAGATACCATGGGAGAGTCTTTCAAGAAACAGGATT  550

seq1  TCAAAAAGAAAACTTAGCTGTGACAACACTCTTGGTGTGGGGGGAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGAAAACTTAGCTGTGACAACACTCTTGGTGTGGGGGGAAGAGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604


seq1: chr13_6221799_6222947
seq2: B6Ng01-031P15.g_68_1181

seq1  GAATTCCAGGTGCAGGTCTTGGAACAATAAGATCTGGGATGAGGCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCAGGTCTTGGAACAATAAGATCTGGGATGAGGCAGGTA  50

seq1  CTTATATAATTGCCTTCTTCCTATGAAATAAGTCATTCATGAGGGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAATTGCCTTCTTCCTATGAAATAAGTCATTCATGAGGGACAGT  100

seq1  GATAGTCTTCAGCAAATAAGAGTCAGAAGAGGAGTTGAAGTGGCTAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTTCAGCAAATAAGAGTCAGAAGAGGAGTTGAAGTGGCTAGAGG  150

seq1  GAAGAATTCAGTAGGACTTGGGACACAGTTAGTGGAAAATGTAAACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTCAGTAGGACTTGGGACACAGTTAGTGGAAAATGTAAACTTTT  200

seq1  CTACCCATCTCCTTTGTTCTTGGGCTACCTCTTTCAAAGCCAAACATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATCTCCTTTGTTCTTGGGCTACCTCTTTCAAAGCCAAACATGTA  250

seq1  AGTAAACTGTAAATTCATGAGACGCCATGAGCAGTCACATAGAGTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTGTAAATTCATGAGACGCCATGAGCAGTCACATAGAGTCTGGA  300

seq1  AAGCAGCATTAGATTCGAGTTATCATGGCTCTGTGATATCACTAGGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCATTAGATTCGAGTTATCATGGCTCTGTGATATCACTAGGTAAG  350

seq1  ATTTGTGTTTTTAATAAATACATCAAACCGGCACACATTTCTTCCCGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTTTTAATAAATACATCAAACCGGCACACATTTCTTCCCGTTA  400

seq1  AAAATAAAGAATTCTGATATTTTTTAAAAATCCCAAAGAATCGGTCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAATTCTGATATTTTTTAAAAATCCCAAAGAATCGGTCAGGT  450

seq1  AGTTCAAACAGTCATGTTGCTTTTGCTGTCTTAACCACTGTTCCATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAACAGTCATGTTGCTTTTGCTGTCTTAACCACTGTTCCATTGCT  500

seq1  GTGAAGAGACACTATGACCATGGCAACTCCTGTAAAGAAAGCATTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGACACTATGACCATGGCAACTCCTGTAAAGAAAGCATTTTTGA  550

seq1  GGCTTATTTGTAGTTGCAGACATTTAGTCCTTTATTATCATGGTAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTTGTAGTTGCAGACATTTAGTCCTTTATTATCATGGTAGGAAA  600

seq1  TAAGGTGGCACACAGGCAGACATGGTGTTGGAAAAGTAGCTAAGAGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGCACACAGGCAGACATGGTGTTGGAAAAGTAGCTAAGAGCTAT  650

seq1  AATCTGAACCACTACCCAAGACAGAGACTCGAAACTTGGCATGGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAACCACTACCCAAGACAGAGACTCGAAACTTGGCATGGGTTTTT  700

seq1  GAACGCTTAAAGCTCTCCCCCTCCTGTGACATTCTTTCTCCAACAAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTTAAAGCTCTCCCCCTCCTGTGACATTCTTTCTCCAACAAGGCC  750

seq1  ACACTTCCTAATCCTTTCAAATAGTTCCATTGTTTGGTAACTAAGCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCTAATCCTTTCAAATAGTTCCATTGTTTGGTAACTAAGCATTC  800

seq1  AAATATTTTGACTCTATGGGGCTGTTCTTATTTAAACCAATACATGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTGACTCTATGGGGCTGTTCTTATTTAAACCAATACATGACCA  850

seq1  TAATTCGATGTCATGGCAGCAAAAATGCAGGGATGCCCTCAGGTCTGGGT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAATTCGATGTCATGGCAGCAAAAATGCAGGGATGCCCTCA-GTCTGGGT  899

seq1  CATGAATGTTTAGATAACTAATTCAAGATTCTGAACTAGAGATAATCCTT  950
      |||||||| |||||| ||||||   |||||||| |||||||| |||||||
seq2  CATGAATG-TTAGAT-ACTAAT--CAGATTCTG-ACTAGAGAAAATCCTT  944

seq1  TAACTAGTTGTTTTGTCTCTTAATGAATTGCATTCATTAATTGGTATCTA  1000
      | ||||||   |||||||||  ||||| |||| ||||||| |||||||||
seq2  T-ACTAGT--GTTTGTCTCT--ATGAA-TGCA-TCATTAA-TGGTATCTA  986

seq1  TTGGTATCTCTTAGTGCGGGATATATTTTAACACCTTCTACTTCAGATAA  1050
       ||||||||||||| |||||||||| ||||||||||||||| ||||||||
seq2  -TGGTATCTCTTAG-GCGGGATATA-TTTAACACCTTCTAC-TCAGATAA  1032

seq1  ACAAGCTTGGGTCCCCAGACTTCCCTAACTAGCACTTACTGGCCATGACC  1100
         |||||||    |||||||||||| ||||| || |||| || ||   |
seq2  --CAGCTTGG---TCCAGACTTCCCT-ACTAGGAC-TACT-GCAAT--AC  1072

seq1  ATTCTAGGTTCAGATTTCTGTTAACAGTTCAGGTTATTGGCTATGAACA  1149
      |||| ||  |||||  ||||||||| |||||||| ||  ||||||||||
seq2  ATTCCAG--TCAGA--TCTGTTAAC-GTTCAGGTAAT--GCTATGAACA  1114


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