BAC Information

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BAC

Clone NameB6Ng01-032A03
Chromosome13 (Build37)
Map Location 71,178,246 - 71,343,443
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032A03.bB6Ng01-032A03.g
ACCDH861465DH861466
length1,029721
definitionDH861465|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A03, 5' end.DH861466|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,342,398 - 71,343,443)(71,178,246 - 71,178,965)
sequence
gaattcacccaaacctagactcagtaactacattttttgttctagttttt
tccagtaagcacagttagtaaggccactcagagagagcttgtgttaagtc
cacgccatgaccatacgttttacctgggggttatatctagagacccaaga
gcactgtctccatccttacttccagcctcaggaacccatacttcacagcc
aggagcccaatgttccctccatggtgatggagactggatgacacaaccag
aaaccttgattaaaagcactgtcttagaggctggcaagagggatcagcag
agaaaggtacttgcatccaattgcatccaatagcctgtggactcgtggca
ggagagaactggctcctgcaggttgtcctctgacctctggcccgcctccc
ccaattgtaccatttgaccttcttacccaccaagtcaataaataaaagtt
tttaaaacacattgcctttggcaaatggttgatctttaacagttgccaat
tccagtcatttaaagctatggacattctagcacaggaacatgtatttggg
accttggttatcagtaccagctcctggcccactagctcgggtaggacatg
ttttcattctctaagctttctttatcaattctattagcaaacagagtgaa
gccacaaaagcacaatgctgctataactttctcagaagttcacagtgtga
cataagccaggggcttttggcaaagcaaactttgaacaggctctgacacc
tcagcagcaaaatgccaggatccaggccttgctccagggaaagggcaggg
tcagtggagatctctcccccaataccatctagacagatccaattgtatac
caaaggctatcttgtgttgtgaaagtcactagcttccttaaagacctgga
acaggccactctctacacccagattctaactgttgttgcattacaacctg
aggccccaagatttggatacatcaaatatgccgaaatgtaccccaaaata
tttaaaatcaatggttacgaatcagggtt
gaattcaaattctaaccttcttgccatctgtgttattttgggaaaacaaa
tttacctcccagtaagatcagaaggctctttacaaaaaagaaaataggca
acaatttcaaatagtaagtggtttgatggcatcaaattgtgagactgctg
atcctctcatccttagtcccttaggaactgcttgtgaaattcctgttaat
accggtaaggtagaactaaatccctccagaagagtcaatgcactcactac
tctgtaagccacccctctttgagcttgttgctagagcaaatcactctaaa
tatgcaggagtctttccgaacagtaatacttcacacctctaggtgagcaa
catccttttaaacaaaatggttgcagggcatttttttttcagaagaaaca
cttggtgattggtttccaagatcacagaagctagaacactcatattcttc
gagtccccacagggtgagacctggatactatacctctgcttccaggggtc
aagaagatgaaaaggagtgaagactctgagctctagccattcacaaatgg
gatgcaggctctgtgtgctaatgatggattccgaagatattttcaatttt
tgaactcgctgcagtcaaacctcccaggtaactctaatatgaaataggta
aatcgagggagaaaaggaggaagagaggagacggaatggaagggaaagaa
aaaggaggggagatgtgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71342398_71343443
seq2: B6Ng01-032A03.b_40_1068 (reverse)

seq1  AACCACTGATTCGTAACACATTTGATTTTTAATTAATTTTTGGGTGTTAC  50
      |||| |||||||||||| || |||||||| |||  ||||| |||   |||
seq2  AACC-CTGATTCGTAAC-CA-TTGATTTTAAAT--ATTTTGGGG---TAC  42

seq1  ATTTTCGACATATTTTGATGTCTCCATATCTTTGGTGGCCTTCAGGTTTG  100
      | ||||| |||| |||||||| |||| |||||  | |||| |||||||  
seq2  A-TTTCGGCATA-TTTGATGTATCCAAATCTT--GGGGCC-TCAGGTT--  85

seq1  TTAATGCAACCAACAGTTTAGAATCTGGGGTGTAGAGAGTGGCCTGTTCC  150
       |||||||| |||||| ||||||||| |||||||||||||||||||||||
seq2  GTAATGCAA-CAACAG-TTAGAATCT-GGGTGTAGAGAGTGGCCTGTTCC  132

seq1  AGGTCCTTAAGGAAGCTAGTGACTTTCACAACACAAGACTGCCTTTGGTA  200
      ||||| ||||||||||||||||||||||||||||||||  ||||||||| 
seq2  AGGTCTTTAAGGAAGCTAGTGACTTTCACAACACAAGATAGCCTTTGGT-  181

seq1  ATAC-ATTGGATCTGTCTAGATGGTATTGGGGGAGAGATCTCCACTGACC  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTGGATCTGTCTAGATGGTATTGGGGGAGAGATCTCCACTGACC  231

seq1  CTGCCCTTTCCCTGGAGCAAGGCCTGGATCCTGGCATTTTGCTGCTGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTTCCCTGGAGCAAGGCCTGGATCCTGGCATTTTGCTGCTGAGG  281

seq1  TGTCAGAGCCTGTTCAAAGTTTGCTTTGCC-AAAGCCCCTGGCTTATGTC  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTCAGAGCCTGTTCAAAGTTTGCTTTGCCAAAAGCCCCTGGCTTATGTC  331

seq1  ACACTGTGAACTTCTGAGAAAGTTATAGCAGCATTGTGCTTTTGTGGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGAACTTCTGAGAAAGTTATAGCAGCATTGTGCTTTTGTGGCTT  381

seq1  CACTCTGTTTGCTAATAGAATTGATAAAGAAAGCTTAGAGAATGAAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTTTGCTAATAGAATTGATAAAGAAAGCTTAGAGAATGAAAACA  431

seq1  TGTCCTACCCGAGCTAGTGGGCCAGGAGCTGGTACTGATAACCAAGGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTACCCGAGCTAGTGGGCCAGGAGCTGGTACTGATAACCAAGGTCC  481

seq1  CAAATACATGTTCCTGTGCTAGAATGTCCATAGCTTTAAATGACTGGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACATGTTCCTGTGCTAGAATGTCCATAGCTTTAAATGACTGGAAT  531

seq1  TGGCAACTGTTAAAGATCAACCATTTGCCAAAGGCAATGTGTTTTAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACTGTTAAAGATCAACCATTTGCCAAAGGCAATGTGTTTTAAAAA  581

seq1  CTTTTATTTATTGACTTGGTGGGTAAGAAGGTCAAATGGTACAATTGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTATTGACTTGGTGGGTAAGAAGGTCAAATGGTACAATTGGGG  631

seq1  GAGGCGGGCCAGAGGTCAGAGGACAACCTGCAGGAGCCAGTTCTCTCCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGGCCAGAGGTCAGAGGACAACCTGCAGGAGCCAGTTCTCTCCTG  681

seq1  CCACGAGTCCACAGGCTATTGGATGCAATTGGATGCAAGTACCTTTCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGAGTCCACAGGCTATTGGATGCAATTGGATGCAAGTACCTTTCTCT  731

seq1  GCTGATCCCTCTTGCCAGCCTCTAAGACAGTGCTTTTAATCAAGGTTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCCCTCTTGCCAGCCTCTAAGACAGTGCTTTTAATCAAGGTTTCT  781

seq1  GGTTGTGTCATCCAGTCTCCATCACCATGGAGGGAACATTGGGCTCCTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTCATCCAGTCTCCATCACCATGGAGGGAACATTGGGCTCCTGG  831

seq1  CTGTGAAGTATGGGTTCCTGAGGCTGGAAGTAAGGATGGAGACAGTGCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGTATGGGTTCCTGAGGCTGGAAGTAAGGATGGAGACAGTGCTC  881

seq1  TTGGGTCTCTAGATATAACCCCCAGGTAAAACGTATGGTCATGGCGTGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTCTAGATATAACCCCCAGGTAAAACGTATGGTCATGGCGTGGA  931

seq1  CTTAACACAAGCTCTCTCTGAGTGGCCTTACTAACTGTGCTTACTGGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACAAGCTCTCTCTGAGTGGCCTTACTAACTGTGCTTACTGGAAA  981

seq1  AAACTAGAACAAAAGTTGTAGTTACTGAGTCTAGGTTTGGGTGAATTC  1046
      ||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  AAACTAGAACAAAAAATGTAGTTACTGAGTCTAGGTTTGGGTGAATTC  1029

seq1: chr13_71178246_71178965
seq2: B6Ng01-032A03.g_66_786

seq1  GAATTCAAATTCTAACCTTCTTGCCATCTGTGTTATTTTGGGAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTCTAACCTTCTTGCCATCTGTGTTATTTTGGGAAAACAAA  50

seq1  TTTACCTCCCAGTAAGATCAGAAGGCTCTTTACAAAAAAGAAAATAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCCCAGTAAGATCAGAAGGCTCTTTACAAAAAAGAAAATAGGCA  100

seq1  ACAATTTCAAATAGTAAGTGGTTTGATGGCATCAAATTGTGAGACTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCAAATAGTAAGTGGTTTGATGGCATCAAATTGTGAGACTGCTG  150

seq1  ATCCTCTCATCCTTAGTCCCTTAGGAACTGCTTGTGAAATTCCTGTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCATCCTTAGTCCCTTAGGAACTGCTTGTGAAATTCCTGTTAAT  200

seq1  ACCGGTAAGGTAGAACTAAATCCCTCCAGAAGAGTCAATGCACTCACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTAAGGTAGAACTAAATCCCTCCAGAAGAGTCAATGCACTCACTAC  250

seq1  TCTGTAAGCCACCCCTCTTTGAGCTTGTTGCTAGAGCAAATCACTCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGCCACCCCTCTTTGAGCTTGTTGCTAGAGCAAATCACTCTAAA  300

seq1  TATGCAGGAGTCTTTCCGAACAGTAATACTTCACACCTCTAGGTGAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGGAGTCTTTCCGAACAGTAATACTTCACACCTCTAGGTGAGCAA  350

seq1  CATCCTTTTAAACAAAATGGTTGCAGGGCATTTTTTTTTCAGAAGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTTAAACAAAATGGTTGCAGGGCATTTTTTTTTCAGAAGAAACA  400

seq1  CTTGGTGATTGGTTTCCAAGATCACAGAAGCTAGAACACTCATATTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGATTGGTTTCCAAGATCACAGAAGCTAGAACACTCATATTCTTC  450

seq1  GAGTCCCCACAGGGTGAGACCTGGATACTATACCTCTGCTTCCAGGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCACAGGGTGAGACCTGGATACTATACCTCTGCTTCCAGGGGTC  500

seq1  AAGAAGATGAAAAGGAGTGAAGACTCTGAGCTCTAGCCATTCACAAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGATGAAAAGGAGTGAAGACTCTGAGCTCTAGCCATTCACAAATGG  550

seq1  GATGCAGGCTCTGTGTGCTAATGATGGATTCCGAAGATA-TTTCAATTTT  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGCAGGCTCTGTGTGCTAATGATGGATTCCGAAGATATTTTCAATTTT  600

seq1  TGAACTCGCTGCAGTCAAACCTCCCAGGTAACTCTAATATGAAATAGGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCGCTGCAGTCAAACCTCCCAGGTAACTCTAATATGAAATAGGTA  650

seq1  AATCGAGGGAGAAAAGGAGGAAGAGAGGAGACGGAATGGAAGGGAAAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAGGGAGAAAAGGAGGAAGAGAGGAGACGGAATGGAAGGGAAAGAA  700

seq1  AAAGGAGGGGAGATGTGGGGA  720
      |||||||||||||||||||||
seq2  AAAGGAGGGGAGATGTGGGGA  721