BAC Information

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BAC

Clone NameB6Ng01-032F06
Chromosome13 (Build37)
Map Location 45,279,394 - 45,399,824
singlet/doubletdoublet
Overlap geneLOC667204, LOC100039533
Upstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502
Downstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032F06.bB6Ng01-032F06.g
ACCDH861699DH861700
length8861,106
definitionDH861699|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F06, 5' end.DH861700|Mus musculus domesticus DNA, BAC clone: B6Ng01-032F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,279,394 - 45,280,279)(45,398,697 - 45,399,824)
sequence
gaattccttggacataccaatagagccaggccaaggtggccatcctttag
gaaggagacagacaaggagatgcttgggaaggggatgaggtgtcaggaag
ggtttggagataaagtgttctgagtggtcctggatggatgtaggaggaac
tggtccagggcttcctagacacatctccatctccagcatctaagtgccct
ctgggctctcagatttgttaggggagctgtgtggatgtgctggcagctgt
taagcaaagagaaaagacaggaaatactgacacacacacaaaccctatgg
ttgtgcaagctctttaaaaagtatttgtatgtttcatgtgtgtgtggctg
cacatccttaatgtgtgagtgcgcacacatgtatgggagccagagatcaa
ccttctgtgtcactgtttaggtaccatccaaccttttttctgtctctttt
atccaatgaacaccaattcagctaggctggcaggaggtggagcccaggca
cctgcaatgccgcccagagctgggattataaacaagccttcacacccgat
attttatgtaggttctgggaccagaacttgtccagcgaatatttcaccta
ctgagccatctcacatgcaccccgcttcccgggaaccctttacatttctg
gtctgttctcgcatgcactcagaattcagacacatacagattatccctgt
gcctgcctgtctctgacaacaaggttgcttcccccttcatgtggtcctca
gctgcctgctttatattgggtgtcattttccctaagggccatcttttcct
tccctgatggtcccagggtcctgcttctccatctactgaggctgtgtaat
tgttacctgtttctagctccgttgccacagccttga
gaattccttatatgtacctggaatccctttgctcttcttaaaggctgact
tagggatctgagaaactagcaagggataatgatgatggcaggcatcagcg
ggggtccctttctcatctccttgcccccagacagatgaaaatgacaactc
catcaggactaagaatattctttaaaatcaggggactgcaaataggctat
gagcggagcagcaatcgctaccatgtattctaggagagtgaaaaaagcaa
tgaacacacacacacagacacttttttttaatcaagcctttgggatcttt
atgattgtgggcaatagtttacctctagtttccctgtttgtaagaacacc
taccatagcatggtgcaggggtgcgacttgagctgcatcctactgtggca
caagccctctatgacagtgttccttgttttctttgaaactcaaagctgtc
taggatttgggcttgcatttgtgttccctgtttctgaatttctgaaagga
gttgagtttgttctaggatggtttagagcctaaaatatcttcgctatcaa
gaactatcctctccccagcagtgctcccaggaaggaaacattcttagatg
ccctgacttgtaaaaataaacactttaatcatgggaagaagtcgccagcg
gccgatgcctgcctggcctagaggcctcactgccttctgcatccggaagc
cctggatacagaccatctctggttgttgtgtgtggcttgcctaaggatgg
aactactgtggcataatggagtcctagccggagacagctaagtctctgct
atgtgttccctgctatgtgttccctgctatatgttctcccatgtgttctt
gctatttgtccctgctatatgttcccccatgtgttccccgatacgtgttc
ccactgtgttcccctactatgtgtcattctgttttgtgtggtggctaaag
agacaacatcactgcccaaccacaacagcttttttataatggcatggcag
tgtgggcaattcccggaaaatccaaatgttaacaacttaaatgaaaagaa
atgtctaatttttcacgaaacaggaaaacttcaaattttttttttatagg
agttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45279394_45280279
seq2: B6Ng01-032F06.b_50_935

seq1  GAATTCCTTGGACATACCAATAGAGCCAGGCCAAGGTGGCCATCCTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGACATACCAATAGAGCCAGGCCAAGGTGGCCATCCTTTAG  50

seq1  GAAGGAGACAGACAAGGAGATGCTTGGGAAGGGGATGAGGTGTCAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGACAGACAAGGAGATGCTTGGGAAGGGGATGAGGTGTCAGGAAG  100

seq1  GGTTTGGAGATAAAGTGTTCTGAGTGGTCCTGGATGGATGTAGGAGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGAGATAAAGTGTTCTGAGTGGTCCTGGATGGATGTAGGAGGAAC  150

seq1  TGGTCCAGGGCTTCCTAGACACATCTCCATCTCCAGCATCTAAGTGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGGGCTTCCTAGACACATCTCCATCTCCAGCATCTAAGTGCCCT  200

seq1  CTGGGCTCTCAGATTTGTTAGGGGAGCTGTGTGGATGTGCTGGCAGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTCAGATTTGTTAGGGGAGCTGTGTGGATGTGCTGGCAGCTGT  250

seq1  TAAGCAAAGAGAAAAGACAGGAAATACTGACACACACACAAACCCTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAAGAGAAAAGACAGGAAATACTGACACACACACAAACCCTATGG  300

seq1  TTGTGCAAGCTCTTTAAAAAGTATTTGTATGTTTCATGTGTGTGTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAGCTCTTTAAAAAGTATTTGTATGTTTCATGTGTGTGTGGCTG  350

seq1  CACATCCTTAATGTGTGAGTGCGCACACATGTATGGGAGCCAGAGATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTTAATGTGTGAGTGCGCACACATGTATGGGAGCCAGAGATCAA  400

seq1  CCTTCTGTGTCACTGTTTAGGTACCATCCAACCTTTTTTCTGTCTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTGTCACTGTTTAGGTACCATCCAACCTTTTTTCTGTCTCTTTT  450

seq1  ATCCAATGAACACCAATTCAGCTAGGCTGGCAGGAGGTGGAGCCCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGAACACCAATTCAGCTAGGCTGGCAGGAGGTGGAGCCCAGGCA  500

seq1  CCTGCAATGCCGCCCAGAGCTGGGATTATAAACAAGCCTTCACACCCGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAATGCCGCCCAGAGCTGGGATTATAAACAAGCCTTCACACCCGAT  550

seq1  ATTTTATGTAGGTTCTGGGACCAGAACTTGTCCAGCGAATATTTCACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTAGGTTCTGGGACCAGAACTTGTCCAGCGAATATTTCACCTA  600

seq1  CTGAGCCATCTCACATGCACCCCGCTTCCCGGGAACCCTTTACA-TTCTG  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGAGCCATCTCACATGCACCCCGCTTCCCGGGAACCCTTTACATTTCTG  650

seq1  GTCTGTTCTCGCATGCACTCAGAATTCAGACACATACAGATTATCCCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCTCGCATGCACTCAGAATTCAGACACATACAGATTATCCCTGT  700

seq1  GCCTGCCTGTCTCTGACAACAAGGTTGCTTCCCCCTTCATGTGGTCCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTGTCTCTGACAACAAGGTTGCTTCCCCCTTCATGTGGTCCTCA  750

seq1  GCTGCCTGCTTTATATTGGGTGTCATTTTCCCTAAGGGCCATC-TTTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTGCCTGCTTTATATTGGGTGTCATTTTCCCTAAGGGCCATCTTTTCCT  800

seq1  TCCCTGATGGTCCCAGGGTCCTGCTTCTCCATCTACATGAGGCTGTGTAA  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCCTGATGGTCCCAGGGTCCTGCTTCTCCATCTAC-TGAGGCTGTGTAA  849

seq1  TTGTTACCTGTTTCTCAGCTCCGTTGCCACAGCCTTGA  886
      ||||||||||||||| ||||||||||||||||||||||
seq2  TTGTTACCTGTTTCT-AGCTCCGTTGCCACAGCCTTGA  886

seq1: chr13_45398697_45399824
seq2: B6Ng01-032F06.g_68_1173 (reverse)

seq1  ATAACTCATGATTTAAAAAAAAAATCTGAAGTTTATTCCTGTACTGTGAA  50
      |||||||    | |||||||||||| |||||||  |||||||   |||||
seq2  ATAACTC---CTATAAAAAAAAAATTTGAAGTT--TTCCTGTTTCGTGAA  45

seq1  AAACTGAGACATTTCTCTTCATTTTAAGTTGTTTAACCATCTGGATTTTC  100
      ||| | |||||||||| |||| |||||||||||  | ||| |||||||| 
seq2  AAA-TTAGACATTTCTTTTCA-TTTAAGTTGTT--AACATTTGGATTTT-  90

seq1  CCGGAAATTGCACACACTGACCATGCCATTATATAAAAGCTGTTGTGGTT  150
      |||| |||||| ||||||| ||||||||||||| |||||||||||||| |
seq2  CCGGGAATTGCCCACACTG-CCATGCCATTATAAAAAAGCTGTTGTGG-T  138

seq1  TGGGCAGTGGATGTTGCTCTCATCTAAGCCACCACAACAAAACAGAATGA  200
      |||||||| ||||||| ||||   | ||||||||| ||||||||||||| 
seq2  TGGGCAGT-GATGTTG-TCTC--TTTAGCCACCAC-ACAAAACAGAATG-  182

seq1  ACACATAGTAGGGGAACACAGTGGGGAACACGTATCGGGGAACACATGGG  250
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  ACACATAGTAGGGGAACACAGT-GGGAACACGTATCGGGGAACACAT-GG  230

seq1  GGGAACATATAGCAGGGAACAAATAGCAAGGAACACATGGGAGAACATAT  300
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  GGGAACATATAGCAGGG-ACAAATAGCAA-GAACACATGGGAGAACATAT  278

seq1  AGCAGGGAACACATAGCAGGGAACACATAGCAGAGACTTAGCTGTCTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAACACATAGCAGGGAACACATAGCAGAGACTTAGCTGTCTCCG  328

seq1  GCTAGGACTCCATTATGCCACAGTAGTTCCATCCTTAGGCAAGCCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGACTCCATTATGCCACAGTAGTTCCATCCTTAGGCAAGCCACACA  378

seq1  CAACAACCAGAGATGGTCTGTATCCAGGGCTTCCGGATGCAGAAGGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCAGAGATGGTCTGTATCCAGGGCTTCCGGATGCAGAAGGCAGT  428

seq1  GAGGCCTCTAGGCCAGGCAGGCATCGGCCGCTGGCGACTTCTTCCCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCTAGGCCAGGCAGGCATCGGCCGCTGGCGACTTCTTCCCATGA  478

seq1  TTAAAGTGTTTATTTTTACAAGTCAGGGCATCTAAGAATGTTTCCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGTTTATTTTTACAAGTCAGGGCATCTAAGAATGTTTCCTTCCT  528

seq1  GGGAGCACTGCTGGGGAGAGGATAGTTCTTGATAGCGAAGATATTTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCACTGCTGGGGAGAGGATAGTTCTTGATAGCGAAGATATTTTAGG  578

seq1  CTCTAAACCATCCTAGAACAAACTCAACTCCTTTCAGAAATTCAGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACCATCCTAGAACAAACTCAACTCCTTTCAGAAATTCAGAAACA  628

seq1  GGGAACACAAATGCAAGCCCAAATCCTAGACAGCTTTGAGTTTCAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACAAATGCAAGCCCAAATCCTAGACAGCTTTGAGTTTCAAAGAA  678

seq1  AACAAGGAACACTGTCATAGAGGGCTTGTGCCACAGTAGGATGCAGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAACACTGTCATAGAGGGCTTGTGCCACAGTAGGATGCAGCTCA  728

seq1  AGTCGCACCCCTGCACCATGCTATGGTAGGTGTTCTTACAAACAGGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCACCCCTGCACCATGCTATGGTAGGTGTTCTTACAAACAGGGAAA  778

seq1  CTAGAGGTAAACTATTGCCCACAATCATAAAGATCCCAAAGGCTTGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGTAAACTATTGCCCACAATCATAAAGATCCCAAAGGCTTGATTA  828

seq1  AAAAAAAGTGTCTGTGTGTGTGTGTTCATTGCTTTTTTCACTCTCCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTGTCTGTGTGTGTGTGTTCATTGCTTTTTTCACTCTCCTAGA  878

seq1  ATACATGGTAGCGATTGCTGCTCCGCTCATAGCCTATTTGCAGTCCCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGTAGCGATTGCTGCTCCGCTCATAGCCTATTTGCAGTCCCCTG  928

seq1  ATTTTAAAGAATATTCTTAGTCCTGATGGAGTTGTCATTTTCATCTGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGAATATTCTTAGTCCTGATGGAGTTGTCATTTTCATCTGTCT  978

seq1  GGGGGCAAGGAGATGAGAAAGGGACCCCCGCTGATGCCTGCCATCATCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAAGGAGATGAGAAAGGGACCCCCGCTGATGCCTGCCATCATCAT  1028

seq1  TATCCCTTGCTAGTTTCTCAGATCCCTAAGTCAGCCTTTAAGAAGAGCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTTGCTAGTTTCTCAGATCCCTAAGTCAGCCTTTAAGAAGAGCAA  1078

seq1  AGGGATTCCAGGTACATATAAGGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  AGGGATTCCAGGTACATATAAGGAATTC  1106