BAC Information

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BAC

Clone NameB6Ng01-032I17
Chromosome13 (Build37)
Map Location 46,479,913 - 46,619,740
singlet/doubletdoublet
Overlap geneRbm24, Cap2
Upstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574
Downstream geneC78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032I17.bB6Ng01-032I17.g
ACCDH861850DH861851
length964617
definitionDH861850|Mus musculus domesticus DNA, BAC clone: B6Ng01-032I17, 5' end.DH861851|Mus musculus domesticus DNA, BAC clone: B6Ng01-032I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,479,913 - 46,480,930)(46,619,124 - 46,619,740)
sequence
gaattccaagacacaaagtcaggatctctcaacatcttctcctggactca
caataggaagactctgcccttcctgcaacaaacacagacacagacacaga
cacagacacagacacagacacagacacagacacagacacagacacagaca
cagacacagtcacagacacagacacagacacagtcacacacacacacaca
cacacacacacacacacacacacacacagacgacacagacacagacacag
acacacagacacaggcacagacacacagacacagacgacacagacacaga
cacacagacacagacacacacacacacacacacacagacacacacacaca
cacagacacacacacagacacacacacacacagacacacagacatacaga
cacacacacacacacacacacacacacacacacacacacatgcaagcaca
tggaaaatacccacagccttcctaagaaacactctaactgcaaatcttta
tcctctggaagctgattggagctgtctcacaaacttcaacactgttgtcc
atatcctgttgagatagctcagtgcctccattatagagaggaagagcact
actaaagaatatgtctcagatattaaggagaggttattatgatgttccgt
tatacatattgttctgttctgatcctggctctgtggcatgcttctgcatc
attcgctgtgtatggtggttgcttgttgttgttgttgttgttctgttcac
aagttgatacgtacctgcatctcatctcaatctgtaagtgttcaccattg
atcttccatatacttctcttgagatgtattgtctggaagtatatatgtct
ggatgtctacaggctctattagctactgtctcttcttggtatttcgtgct
ctctgagtatactccatctttttactctctctgtgattctcggtctatct
cgtgaccatcattt
gaattcagttaacttattactatctgagagctgtatctcacttatttatg
actaccttcggtggaaatcagtctgcgaccacagagagaataaagcatgc
cggctttagccagagcctatggtttcttccactcttaggaactttcccaa
gcatcgttgtgagcaagggagggatggcatgcttccgaaaatcatggaca
cagctgccctggagcaaggatgagctgtgtcaccttgggatgtgtgaata
tttcaagagtttccctggaagccaggagaatgtgcgtctctgcatttctc
agtttaaatacgatgatcaggtcaccacagtttccaaacgcaagcttaac
atcatctaaccacacgcctggctttgtacttcagcaactaaatatcagta
gtcagagatggacgcagaactcgtggtctattttggaaacccatcgctct
ggaagctgccgccggcagcgctctcaaaatatggaacaggactctctgca
cggctgaatccagcatctaatcccaaggggttgcaaaattagaagttgct
cagctattcttttcctcttcacgtcagagcttctgattccactgcagttg
aagggggtgggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46479913_46480930
seq2: B6Ng01-032I17.b_44_1007

seq1  GAATTCCAAGACACAAAGTCAGGATCTCTCAACATCTTCTCCTGGACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACACAAAGTCAGGATCTCTCAACATCTTCTCCTGGACTCA  50

seq1  CAATAGGAAGACTCTGCCCTTCCTGCAACAAACACAGACACAGACACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGAAGACTCTGCCCTTCCTGCAACAAACACAGACACAGACACAGA  100

seq1  CACAGACACAGACACAGACACAGACACAGACACAGACACAGACACAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACAGACACAGACACAGACACAGACACAGACACAGACACAGACA  150

seq1  CAGACACAGTCACAGACACAGACACAGACACAGTCACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGTCACAGACACAGACACAGACACAGTCACACACACACACACA  200

seq1  CACACACACACACACACACACACACACAGACGACACAGACACAGACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAGACGACACAGACACAGACACAG  250

seq1  ACACACAGACACAGGCACAGACACACAGACACAGACGACACAGACACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGACACAGGCACAGACACACAGACACAGACGACACAGACACAGA  300

seq1  CACACAGACACAGACACACACACACACACACACACAGACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACACAGACACACACACACACACACACACAGACACACACACACA  350

seq1  CACAGACACACACACAGACACACACACACACAGACACACAGACATACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACACACAGACACACACACACACAGACACACAGACATACAGA  400

seq1  CACACACACACACACACACACACACACACACACACACACATGCAAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACATGCAAGCACA  450

seq1  TGGAAAATACCCACAGCCTTCCTAAGAAACACTCTAACTGCAAATCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATACCCACAGCCTTCCTAAGAAACACTCTAACTGCAAATCTTTA  500

seq1  TCCTCTGGAAGCTGATTGGAGCTGTCTCACAAACTTCAACACTGTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGAAGCTGATTGGAGCTGTCTCACAAACTTCAACACTGTTGTCC  550

seq1  ATATCCTGTTGAGATAGCTCAGTGCCTCCCTTTATAAGGAGGAAGAAGCA  600
      ||||||||||||||||||||||||||| || |||||  ||||||| ||||
seq2  ATATCCTGTTGAGATAGCTCAGTGCCT-CCATTATAGAGAGGAAG-AGCA  598

seq1  CTACTAAAGAATAGGTCTCAGAAAAAATTAAAGGGAGAAAGGTTTATTAT  650
      ||||||||||||| |||||||   | |||||  |||||   | |||||||
seq2  CTACTAAAGAATATGTCTCAG---ATATTAA--GGAGA---GGTTATTAT  640

seq1  GATGTTCCGTTATACATATTTTGTTCTGTTCTTTGAAATCCCTGGCTCTG  700
      ||||||||||||||||||  |||||||||||  |||    ||||||||||
seq2  GATGTTCCGTTATACATA--TTGTTCTGTTC--TGA---TCCTGGCTCTG  683

seq1  TGGCATGCTTCTGCATCATTCGCTGTGTATGGTAGGTTTGCTTTTTGTTG  750
      |||||||||||||||||||||||||||||||||  | ||||   ||||||
seq2  TGGCATGCTTCTGCATCATTCGCTGTGTATGGT--GGTTGC---TTGTTG  728

seq1  TTGTTGTTGTTGTTCTGTTCACAAGTTGATACGTACCTGCATCTCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||| |   
seq2  TTGTTGTTGTTGTTCTGTTCACAAGTTGATACGTACCTGCATCTCAT--C  776

seq1  TTAATCTGAAAAATGTTCACCCATTGGCCCCTCCCATATACCTTCTCTTG  850
      | ||||||  || |||||| ||||||    || ||||||| |||||||||
seq2  TCAATCTG-TAAGTGTTCA-CCATTG--ATCTTCCATATA-CTTCTCTTG  821

seq1  AGATGTATTTTGTCTGGAAGTATATTTTGTCTGGATGTCTACAGGGCCTT  900
      |||||||  ||||||||||||||| | ||||||||||||||||||     
seq2  AGATGTA--TTGTCTGGAAGTATA-TATGTCTGGATGTCTACAGG-----  863

seq1  CTTACTTAGCCTTCCTGTCTCTTCCTTGGTTTTTCGGTGCTTCTCTGAGT  950
      ||   |||||  | ||||||||| |||||| |||| |||| |||||||||
seq2  CTCTATTAGC--TACTGTCTCTT-CTTGGTATTTC-GTGC-TCTCTGAGT  908

seq1  ATAACTCCCACCCCTCCTCTTACTCTCTCTGGGTGGATTTCTCCGTTCTA  1000
      || |||     || || | |||||||||||| |     |||| || ||||
seq2  AT-ACT-----CCATCTTTTTACTCTCTCTGTG----ATTCT-CGGTCTA  947

seq1  TCTCGTGACACATCATTT  1018
      ||||||||| ||||||||
seq2  TCTCGTGAC-CATCATTT  964

seq1: chr13_46619124_46619740
seq2: B6Ng01-032I17.g_68_684 (reverse)

seq1  CCCACCCCCACCCCCTTCAACTGCAGTGGAATCAGAAGCTCTGACGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCACCCCCTTCAACTGCAGTGGAATCAGAAGCTCTGACGTGAA  50

seq1  GAGGAAAAGAATAGCTGAGCAACTTCTAATTTTGCAACCCCTTGGGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGAATAGCTGAGCAACTTCTAATTTTGCAACCCCTTGGGATTA  100

seq1  GATGCTGGATTCAGCCGTGCAGAGAGTCCTGTTCCATATTTTGAGAGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGATTCAGCCGTGCAGAGAGTCCTGTTCCATATTTTGAGAGCGC  150

seq1  TGCCGGCGGCAGCTTCCAGAGCGATGGGTTTCCAAAATAGACCACGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGCGGCAGCTTCCAGAGCGATGGGTTTCCAAAATAGACCACGAGTT  200

seq1  CTGCGTCCATCTCTGACTACTGATATTTAGTTGCTGAAGTACAAAGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTCCATCTCTGACTACTGATATTTAGTTGCTGAAGTACAAAGCCAG  250

seq1  GCGTGTGGTTAGATGATGTTAAGCTTGCGTTTGGAAACTGTGGTGACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGGTTAGATGATGTTAAGCTTGCGTTTGGAAACTGTGGTGACCTG  300

seq1  ATCATCGTATTTAAACTGAGAAATGCAGAGACGCACATTCTCCTGGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCGTATTTAAACTGAGAAATGCAGAGACGCACATTCTCCTGGCTTC  350

seq1  CAGGGAAACTCTTGAAATATTCACACATCCCAAGGTGACACAGCTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAACTCTTGAAATATTCACACATCCCAAGGTGACACAGCTCATCC  400

seq1  TTGCTCCAGGGCAGCTGTGTCCATGATTTTCGGAAGCATGCCATCCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCAGGGCAGCTGTGTCCATGATTTTCGGAAGCATGCCATCCCTCC  450

seq1  CTTGCTCACAACGATGCTTGGGAAAGTTCCTAAGAGTGGAAGAAACCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCACAACGATGCTTGGGAAAGTTCCTAAGAGTGGAAGAAACCATA  500

seq1  GGCTCTGGCTAAAGCCGGCATGCTTTATTCTCTCTGTGGTCGCAGACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGCTAAAGCCGGCATGCTTTATTCTCTCTGTGGTCGCAGACTGA  550

seq1  TTTCCACCGAAGGTAGTCATAAATAAGTGAGATACAGCTCTCAGATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCGAAGGTAGTCATAAATAAGTGAGATACAGCTCTCAGATAGTA  600

seq1  ATAAGTTAACTGAATTC  617
      |||||||||||||||||
seq2  ATAAGTTAACTGAATTC  617