BAC Information

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BAC

Clone NameB6Ng01-033B04
Chromosome13 (Build37)
Map Location 113,370,289 - 113,493,161
singlet/doubletdoublet
Overlap geneIl31ra, LOC100041240, Ddx4, 9130023D20Rik
Upstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st
Downstream genePpap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033B04.bB6Ng01-033B04.g
ACCDH862228DH862229
length1,150992
definitionDH862228|Mus musculus domesticus DNA, BAC clone: B6Ng01-033B04, 5' end.DH862229|Mus musculus domesticus DNA, BAC clone: B6Ng01-033B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,491,969 - 113,493,161)(113,370,289 - 113,371,291)
sequence
gaattcttatcttttaattaaaaaaatgtttttcgcagcattgggaatca
aactcagagcctttttggtatccaccaggcaagtgctaacccgatgagct
atagctccaactccaggttatttctcctgagaaagaagatgcagtcatca
cggaggacaaccgagctgtttctgaatgccctgggaggctgctgctctgt
ggaagtggcagttttaggaggaaggggaaatggcacggaggacaacagca
gactgtccttaagaagtctgtatggaagcctgagcctgctggtgtctcac
tgtgcaaactctaagttcatgcgcttgtgaaagactcgttccactggaaa
gacagaagcgagtcagggaaccacagcaagcctctaagctgagagattag
ctggttcagaaagatgaagacaggaggccgagcttatggagccgctccct
gtgctcatgctggcttccacgctgctccgagggagaccgtcagagcctag
cgttacacttttgctctttctgtcaacttaaatagagttaaaatattcct
ttggagatttcagtagaacaggacacacacacagaggtccattcctttaa
ggaggcaactgcactatgaagtcaaaactgaggaagagcaaagagcaggt
tgaacccaagaagctgagctagggctcagcagtagagggcattgcccggc
aggcacaaggccctgctgcctttctgtttgcttttaaagcactgggtttg
atcccaaagaccacacagatggatggatggatggatgagcgaatgagtga
ggaaaacagctccagaatgatcttctccgtttaaagttagatggtaattc
tctgcaatgcctgtctgcccacccccttggttctctctgtagccaaggat
ggccttgaactcctgcttctgtgccccatctcttggtgctgggattaatc
acttggcagtgcatactctaaatgggagtatttgatatctcctaacttta
gtcatctccttagctgcattctcacagaagtagagtgttctagacggtag
atggaaactattattccagaggaaccaacgaaacgaactaactagcaagt
atgaactgaatgtgatctttttttttcttgcatactttagaaaaaacaac

gaattcaaggccagcctgttctacagtgagttccaggacagcaagggcta
cacagagaaattatgtctcaacaaacaaacaaacaaatatttttaaagtt
cccatcaataagaaatgcaaatcaaaacaactttgagatttcatttaccg
cagtcagaatggcaaaggtcaacaagacaacggacagcacacgttggagg
ggtttggggaaagagatagccttacttactgcgagtgggactgcacacag
gtgcagccactgtgcaaaccaacggagagaattctcaaaaagctagtttc
tcacaaataccaccctagactagcaagctaaagggattatccaaaaagat
acttggaattattaaacactgatcaatttaacacccttggaatgtatctg
ttatctcatgatactttgctgctcaaggtttccttagatcaataaatcat
ggcttgttcttaaggcataaatctttaacttatatattcatgcctccata
gcttgaactatttattttcaagaagcaattctcccgttgctggccttggg
agcttaccaggctgatcacagaacggcactaacgcagaacagaaaagctg
cagcaaggcgtaattccactacaaagcagtgcaactcaggcactttgtgg
ggtttctgaaagccttccttaaatacaacagagtgacatagttgtaaccc
cttgccagggagtacaaatggatctcgttaccttatcatgccaagcacaa
tatattatcacaatttcctggaaacccttcaggcattttaagcctttgcc
tcataaattacccttaaaagtgttccgttaaaaacagagtggaaaagtta
tctgctctttctcatcatatgcatgcctcactagtacaaaatggtttttc
ccttatcatggactgaaaggaactacgaggacctggaacagacacaatcc
ctcatgctttcagtcttattcttagtagagccatagttaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113491969_113493161
seq2: B6Ng01-033B04.b_43_1191 (reverse)

seq1  TTGTTTTTTCTGTAAAGTTTGGCACAAGAAAAAAAAAATGGACTCAACCA  50
      ||||||||||  |||||| ||   |||||||||||||   || |||  ||
seq2  TTGTTTTTTC--TAAAGTATG---CAAGAAAAAAAAA---GA-TCA--CA  39

seq1  TTTCAGGTTCCTTTGCTTTGCTTTGTTATGTTTTGGTTTTTGGTTTGGTT  100
       |||| |||| |     |||| | ||||           || |||| |||
seq2  -TTCA-GTTCAT---ACTTGC-TAGTTA----------GTTCGTTTCGTT  73

seq1  --TTCCTCATAGGAATTACTAGGTTTCCCATCTAACCGTCTAGAACAACT  148
        ||||||   |||| || |||  || |||||| |||||||||||| |||
seq2  GGTTCCTC--TGGAA-TAATAG--TTTCCATCT-ACCGTCTAGAAC-ACT  116

seq1  CTTACTTCCTGTGAGAATGCAGCTAGAGGAGATAGACTAAAGTTTGAGGA  198
      | ||||| ||||||||||||||||| ||||||| ||||||||||  ||||
seq2  C-TACTT-CTGTGAGAATGCAGCTA-AGGAGAT-GACTAAAGTT--AGGA  160

seq1  GATATCAAAATAACTCCCATTTAAGAGTATTGCACTGCCAAGTGATTAAT  248
      |||||||||   |||||||||| |||||| ||||||||||||||||||||
seq2  GATATCAAA--TACTCCCATTT-AGAGTA-TGCACTGCCAAGTGATTAAT  206

seq1  CCCAGCACCAAGGAGATGGGGCACAGGAGCAGGAGTTCAAGGCCATCCTT  298
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  CCCAGCACCAA-GAGATGGGGCACAGAAGCAGGAGTTCAAGGCCATCCTT  255

seq1  GGCTACAGAGAGAACCAAGGGGGTGGGCAGACAGGCATTGCAGAGAATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGAGAGAACCAAGGGGGTGGGCAGACAGGCATTGCAGAGAATTA  305

seq1  CCATCTAACTTTAAACGGAGAAGATCATTCTGGAGCTGTTTTTCCTCACT  398
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCATCTAACTTTAAACGGAGAAGATCATTCTGGAGCTG-TTTTCCTCACT  354

seq1  CATTCGCTCATCCATCCATCCATCCATCTGTGTGGTCTTTGGGATCAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGCTCATCCATCCATCCATCCATCTGTGTGGTCTTTGGGATCAAAC  404

seq1  CCAGTGCTTTAAAAGCAAACAGAAAGGCAGCAGGGCCTTGTGCCTGCCGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTTTAAAAGCAAACAGAAAGGCAGCAGGGCCTTGTGCCTGCCGG  454

seq1  GCAATGCCCTCTACTGCTGAGCCCTAGCTCAGCTTCTTGGGTTCAACCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCCCTCTACTGCTGAGCCCTAGCTCAGCTTCTTGGGTTCAACCTG  504

seq1  CTCTTTGCTCTTCCTCAGTTTTGACTTCATAGTGCAGTTGCCTCCTTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTCTTCCTCAGTTTTGACTTCATAGTGCAGTTGCCTCCTTAAA  554

seq1  GGAATGGACCTCTGTGTGTGTGTCCTGTTCTACTGAAATCTCCAAAGGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGACCTCTGTGTGTGTGTCCTGTTCTACTGAAATCTCCAAAGGAA  604

seq1  TATTTTAACTCTATTTAAGTTGACAGAAAGAGCAAAAGTGTAACGCTAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAACTCTATTTAAGTTGACAGAAAGAGCAAAAGTGTAACGCTAGG  654

seq1  CTCTGACGGTCTCCCTCGGAGCAGCGTGGAAGCCAGCATGAGCACAGGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACGGTCTCCCTCGGAGCAGCGTGGAAGCCAGCATGAGCACAGGGA  704

seq1  GCGGCTCCATAAGCTCGGCCTCCTGTCTTCATCTTTCTGAACCAGCTAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCCATAAGCTCGGCCTCCTGTCTTCATCTTTCTGAACCAGCTAAT  754

seq1  CTCTCAGCTTAGAGGCTTGCTGTGGTTCCCTGACTCGCTTCTGTCTTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCTTAGAGGCTTGCTGTGGTTCCCTGACTCGCTTCTGTCTTTCC  804

seq1  AGTGGAACGAGTCTTTCACAAGCGCATGAACTTAGAGTTTGCACAGTGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACGAGTCTTTCACAAGCGCATGAACTTAGAGTTTGCACAGTGAG  854

seq1  ACACCAGCAGGCTCAGGCTTCCATACAGACTTCTTAAGGACAGTCTGCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCAGGCTCAGGCTTCCATACAGACTTCTTAAGGACAGTCTGCTG  904

seq1  TTGTCCTCCGTGCCATTTCCCCTTCCTCCTAAAACTGCCACTTCCACAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCCGTGCCATTTCCCCTTCCTCCTAAAACTGCCACTTCCACAGA  954

seq1  GCAGCAGCCTCCCAGGGCATTCAGAAACAGCTCGGTTGTCCTCCGTGATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCCTCCCAGGGCATTCAGAAACAGCTCGGTTGTCCTCCGTGATG  1004

seq1  ACTGCATCTTCTTTCTCAGGAGAAATAACCTGGAGTTGGAGCTATAGCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCTTCTTTCTCAGGAGAAATAACCTGGAGTTGGAGCTATAGCTC  1054

seq1  ATCGGGTTAGCACTTGCCTGGTGGATACCAAAAAGGCTCTGAGTTTGATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGTTAGCACTTGCCTGGTGGATACCAAAAAGGCTCTGAGTTTGATT  1104

seq1  CCCAATGCTGCGAAAAACATTTTTTTAATTAAAAGATAAGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCTGCGAAAAACATTTTTTTAATTAAAAGATAAGAATTC  1149

seq1: chr13_113370289_113371291
seq2: B6Ng01-033B04.g_69_1060

seq1  GAATTCAAGGCCAGCCTGTTCTACAGTGAGTTCCAGGACAGCAAGGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGTTCTACAGTGAGTTCCAGGACAGCAAGGGCTA  50

seq1  CACAGAGAAATTATGTCTCAACAAACAAACAAACAAATATTTTTAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAATTATGTCTCAACAAACAAACAAACAAATATTTTTAAAGTT  100

seq1  CCCATCAATAAGAAATGCAAATCAAAACAACTTTGAGATTTCATTTACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAATAAGAAATGCAAATCAAAACAACTTTGAGATTTCATTTACCG  150

seq1  CAGTCAGAATGGCAAAGGTCAACAAGACAACGGACAGCACACGTTGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGAATGGCAAAGGTCAACAAGACAACGGACAGCACACGTTGGAGG  200

seq1  GGTTTGGGGAAAGAGATAGCCTTACTTACTGCGAGTGGGACTGCACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGGAAAGAGATAGCCTTACTTACTGCGAGTGGGACTGCACACAG  250

seq1  GTGCAGCCACTGTGCAAACCAACGGAGAGAATTCTCAAAAAGCTAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCCACTGTGCAAACCAACGGAGAGAATTCTCAAAAAGCTAGTTTC  300

seq1  TCACAAATACCACCCTAGACTAGCAAGCTAAAGGGATTATCCAAAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATACCACCCTAGACTAGCAAGCTAAAGGGATTATCCAAAAAGAT  350

seq1  ACTTGGAATTATTAAACACTGATCAATTTAACACCCTTGGAATGTATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAATTATTAAACACTGATCAATTTAACACCCTTGGAATGTATCTG  400

seq1  TTATCTCATGATACTTTGCTGCTCAAGGTTTCCTTAGATCAATAAATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCATGATACTTTGCTGCTCAAGGTTTCCTTAGATCAATAAATCAT  450

seq1  GGCTTGTTCTTAAGGCATAAATCTTTAACTTATATATTCATGCCTCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTCTTAAGGCATAAATCTTTAACTTATATATTCATGCCTCCATA  500

seq1  GCTTGAACTATTTATTTTCAAGAAGCAATTCTCCCGTTGCTGGCCTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAACTATTTATTTTCAAGAAGCAATTCTCCCGTTGCTGGCCTTGGG  550

seq1  AGCTTACCAGGCTGATCACAGAACGGCACTAACGCAGAACAGAAAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACCAGGCTGATCACAGAACGGCACTAACGCAGAACAGAAAAGCTG  600

seq1  CAGCAAGGCGTAATTCCACTACAAAGCAGTGCAACTCAGGCACTTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGCGTAATTCCACTACAAAGCAGTGCAACTCAGGCACTTTGTGG  650

seq1  GGTTTCTGAAAGCCTTCCTTAAATACAACAGAGTGACATAGTTGTAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGAAAGCCTTCCTTAAATACAACAGAGTGACATAGTTGTAACCC  700

seq1  CTTGCCAGGGAGTACAAATGGATCTCGTTACCTTATCATGCCAAGCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAGGGAGTACAAATGGATCTCGTTACCTTATCATGCCAAGCACAA  750

seq1  TATATTATCACAATTTCCTGGAAACCCTTCAGGCATTTTAAGCCTTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATCACAATTTCCTGGAAACCCTTCAGGCATTTTAAGCCTTTGCC  800

seq1  TCATAAATTACCCTTAAAAGTGTTCCGTTAAAAACAGAGTGGAAAAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTACCCTTAAAAGTGTTCCGTTAAAAACAGAGTGGAAAAGTTA  850

seq1  TCTGCTCTTTCTCATCATTATGCATGCCTCACTAGTACAAAATGTTTTTT  900
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  TCTGCTCTTTCTCATCA-TATGCATGCCTCACTAGTACAAAATGGTTTTT  899

seq1  TCCACATTATCAT-GACTGAAAGGAAACTACAGAGGACCCTGGACACAGA  949
       ||   ||||||| |||||||||| |||||| ||||| |||||| |||||
seq2  CCC---TTATCATGGACTGAAAGG-AACTAC-GAGGA-CCTGGA-ACAGA  942

seq1  CACAAGTCCCTCATGTCTTTCAGTCTTTATTCCTAGTAAGAGCCACAGTT  999
      ||||| ||||||||| ||||||||| |||||| |||| ||||||| ||||
seq2  CACAA-TCCCTCATG-CTTTCAGTC-TTATTCTTAGT-AGAGCCATAGTT  988

seq1  AGCA  1003
      | ||
seq2  AACA  992