BAC Information

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BAC

Clone NameB6Ng01-033L03
Chromosome13 (Build37)
Map Location 28,885,949 - 28,951,700
singlet/doubletdoublet
Overlap geneLOC626683
Upstream genePrl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream gene2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033L03.bB6Ng01-033L03.g
ACCDH862672DH862673
length5241,115
definitionDH862672|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L03, 5' end.DH862673|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,951,178 - 28,951,700)(28,885,949 - 28,887,071)
sequence
gaattcattctttatgatgcataggttggcgtgtatgttagaagcacgta
ctgcattttctgtaccaggaggcccaggaagtcatagtgcggcaagactg
tggccctgctatgggactagatgccactactgaagatgagctgaggactt
aatgttcctattgaatgacttgatattctagcatgcccacccccatgttt
atggcacctacccaccccctctgattcattctctctctctctctctctct
ctctctctctctctctctctctctctcacacacacacacacacacacaca
cacacacacacgcgcgcgcgaccccccgcgcgcgcgccccccccactctt
gaagagagagtgtgtgtgtgtgtgtatgggtgggtgtgtgtgtgtgagag
atatatatttctctcagtatatacacgcctctctcggggtgggggtatat
ataagagagatatattttgtgactctcactcttacagggtggggtgtgtg
gggagacacatatctaaatgaaac
gaattcttcacagaggatagtagaattttacatacatccaaaaatgtatg
aaatcaacatgtaaggaaacctgggcaagatcctagaggtcagcagctgc
actccgaggtacagtgtacatggaatgtgaatacagaggtgttatgcacg
catgaagacacgtgtggcgtatcataaaacatgtctgtatcataaaaatg
aggggctcctgagctctgggaacccgctttgcaggatctgtccccttaga
tccttttctttgggtatggtcacaaatccaccagaccctgacctagataa
taaagaaacaggggctgatagttaagtggtagagagcctgcttagcagat
acaaattctgggttcatggcttagtgccacaaaataattttttaatttga
ttaattgtatataataattgtatacatacttttgtcagagatgtcgtatt
ttcataaagctacaaattaatcataaagaagctctcttacgtataaaata
tgcagacaggaatgtctcatgtaattacaaaattgttcttcccaatctgt
gtatctgggctgttttttcctgtccttagagctgcactgactattctcag
tattaactgttattctgtgtttaatgggtggcatgtggctggtggttggg
taagcacagggccacagtttcctatatagaccacgatcctaagttacatc
ctatatccgtcacacacttgagactgcaaaggctggggtcctttataaga
atactggatatctgctcatcaagttgcttattttagttttagtgtgggct
ggtggctttcttcctgagatttgaaatgatgggacaaatgaattgagatg
cttacctagaagaaaattacagtgtttgtgcaactcttgaccagagcacc
ttacttgttaatatgtgtactactaaaattccctttacaaaaaacagaac
ttttgttaaatgactctatgcctgatcccattaaattcaaccacagctga
tgtgtcaaaagctgcaaggaaatggttaagatctctacttctttcttatt
atattaaattattttagcatgcggactgagtatgctcaagagctagggat
aattccactgttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28951178_28951700
seq2: B6Ng01-033L03.b_43_566 (reverse)

seq1  GTTTCATGTAGTAATGTGTCTCCCCACGCGCTCAATGCTTTATTACTTCT  50
      ||||||| |||  |||||||||||||| | | | |  || ||  | |   
seq2  GTTTCATTTAGATATGTGTCTCCCCACACACCCCACCCTGTAAGAGTGAG  50

seq1  GGTTTTGTTTGATGTTGTTGGTTTGGGATTT--------GGGGAAGGGGG  92
       ||        || |   |  | |   || |           ||  | ||
seq2  AGTCACAAAATATATCTCTCTTAT---ATATACCCCCACCCCGAGAGAGG  97

seq1  AGTCTGCCCACCCATTTTCGAGGTCTACCTTTGTGCCATCCACCAGAAGC  142
       || |    ||     |  |||   ||  | | |  ||  |||    | |
seq2  CGTGTATATAC-----TGAGAGAAATATATATCTCTCACACACACACACC  142

seq1  CAGCAAT---CAAAGAAAAGTTCTGGTTTTGCTAGAACAATTATGTGTGT  189
      || | ||   || | | |    ||   | | | ||    | |  | | | 
seq2  CACCCATACACACACACACACACTCTCTCTTCAAG----AGTGGGGGGGG  188

seq1  CAAG-TATAGAAAGAACACCCTCTTTTCAGAAGATAGAGAAT-TGCCT-T  236
      |  |     |   |  | | | |   |  |  |   | |  | ||  | |
seq2  CGCGCGCGCGGGGGGTCGCGCGCGCGTGTG-TGTGTGTGTGTGTGTGTGT  237

seq1  CCAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  286
            | | ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  287

seq1  GAGAGAGAATGAATCAGAGGGGGTGGGTAGGTGCCATAAACATGGGGGTG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAATGAATCAGAGGGGGTGGGTAGGTGCCATAAACATGGGGGTG  337

seq1  GGCATGCTAGAATATCAAGTCATTCAATAGGAACATTAAGTCCTCAGCTC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCTAGAATATCAAGTCATTCAATAGGAACATTAAGTCCTCAGCTC  387

seq1  ATCTTCAGTAGTGGCATCTAGTCCCATAGCAGGGCCACAGTCTTGCCGCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGTAGTGGCATCTAGTCCCATAGCAGGGCCACAGTCTTGCCGCA  437

seq1  CTATGACTTCCTGGGCCTCCTGGTACAGAAAATGCAGTACGTGCTTCTAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACTTCCTGGGCCTCCTGGTACAGAAAATGCAGTACGTGCTTCTAA  487

seq1  CATACACGCCAACCTATGCATCATAAAGAATGAATTC  523
      |||||||||||||||||||||||||||||||||||||
seq2  CATACACGCCAACCTATGCATCATAAAGAATGAATTC  524

seq1: chr13_28885949_28887071
seq2: B6Ng01-033L03.g_66_1180

seq1  GAATTCTTCACAGAGGATAGTAGAATTTTACATACATCCAAAAATGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACAGAGGATAGTAGAATTTTACATACATCCAAAAATGTATG  50

seq1  AAATCAACATGTAAGGAAACCTGGGCAAGATCCTAGAGGTCAGCAGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACATGTAAGGAAACCTGGGCAAGATCCTAGAGGTCAGCAGCTGC  100

seq1  ACTCCGAGGTACAGTGTACATGGAATGTGAATACAGAGGTGTTATGCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGAGGTACAGTGTACATGGAATGTGAATACAGAGGTGTTATGCACG  150

seq1  CATGAAGACACGTGTGGCGTATCATAAAACATGTCTGTATCATAAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGACACGTGTGGCGTATCATAAAACATGTCTGTATCATAAAAATG  200

seq1  AGGGGCTCCTGAGCTCTGGGAACCCGCTTTGCAGGATCTGTCCCCTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTCCTGAGCTCTGGGAACCCGCTTTGCAGGATCTGTCCCCTTAGA  250

seq1  TCCTTTTCTTTGGGTATGGTCACAAATCCACCAGACCCTGACCTAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTGGGTATGGTCACAAATCCACCAGACCCTGACCTAGATAA  300

seq1  TAAAGAAACAGGGGCTGATAGTTAAGTGGTAGAGAGCCTGCTTAGCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACAGGGGCTGATAGTTAAGTGGTAGAGAGCCTGCTTAGCAGAT  350

seq1  ACAAATTCTGGGTTCATGGCTTAGTGCCACAAAATAATTTTTTAATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTGGGTTCATGGCTTAGTGCCACAAAATAATTTTTTAATTTGA  400

seq1  TTAATTGTATATAATAATTGTATACATACTTTTGTCAGAGATGTCGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTATATAATAATTGTATACATACTTTTGTCAGAGATGTCGTATT  450

seq1  TTCATAAAGCTACAAATTAATCATAAAGAAGCTCTCTTACGTATAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAGCTACAAATTAATCATAAAGAAGCTCTCTTACGTATAAAATA  500

seq1  TGCAGACAGGAATGTCTCATGTAATTACAAAATTGTTCTTCCCAATCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAGGAATGTCTCATGTAATTACAAAATTGTTCTTCCCAATCTGT  550

seq1  GTATCTGGGCTGTTTTTTCCTGTCCTTAGAGCTGCACTGACTATTCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGGCTGTTTTTTCCTGTCCTTAGAGCTGCACTGACTATTCTCAG  600

seq1  TATTAACTGTTATTCTGTGTTTAATGGGTGGCATGTGGCTGGTGGTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTGTTATTCTGTGTTTAATGGGTGGCATGTGGCTGGTGGTTGGG  650

seq1  TAAGCACAGGGCCACAGTTTCCTATATAGACCACGATCCTAAGTTACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACAGGGCCACAGTTTCCTATATAGACCACGATCCTAAGTTACATC  700

seq1  CTATATCCGTCACACACTTGAGACTGCAAAGGCTGGGGTCCTTTATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCGTCACACACTTGAGACTGCAAAGGCTGGGGTCCTTTATAAGA  750

seq1  ATACTGGATATCTGCTCATCAAGTTGCTTATTTTAGTTTTAGTGTGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGATATCTGCTCATCAAGTTGCTTATTTTAGTTTTAGTGTGGGCT  800

seq1  GGTGGCTTTCTTCCTGAGATTTGAAATGATGGGACAAATGAATTGAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTTCTTCCTGAGATTTGAAATGATGGGACAAATGAATTGAGATG  850

seq1  CTTACCTAGAAGAAAATTACAGTGTTTGTGCAACTCTTGACCAGAGCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTAGAAGAAAATTACAGTGTTTGTGCAACTCTTGACCAGAGCACC  900

seq1  TTACTTGTTAATATGTGTACTACTAAAATTCCCTTTACAAAAAACAGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTTAATATGTGTACTACTAAAATTCCCTTTACAAAAAACAGAAC  950

seq1  TTTTGTTAAATGACTCTAATGCCTGATCCCATTAAATTCAACCACAGCTG  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTGTTAAATGACTCT-ATGCCTGATCCCATTAAATTCAACCACAGCTG  999

seq1  ATGGTGTCAAAAGCTGGCAGGGAAATGGTTAAGATCTCTACTTCTGTCCT  1050
      || |||||||||||| ||| ||||||||||||||||||||||||| ||  
seq2  AT-GTGTCAAAAGCT-GCAAGGAAATGGTTAAGATCTCTACTTCTTTC--  1045

seq1  TAATTATATTTAAATTAATTTTAGCATGCAGACTGAGTATGCTCACAGAG  1100
      | |||||| ||||||| |||||||||||| ||||||||||||||| ||||
seq2  TTATTATA-TTAAATT-ATTTTAGCATGCGGACTGAGTATGCTCA-AGAG  1092

seq1  CTATGGAATAATCCACTGTTCTA  1123
      ||| |||  | ||||||||||||
seq2  CTAGGGATAATTCCACTGTTCTA  1115