BAC Information

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BAC

Clone NameB6Ng01-033L22
Chromosome13 (Build37)1 (Build37)
Map Location 19,414,798 - 19,415,62067,924,389 - 67,924,885
singlet/doubletsingletsinglet
Overlap geneTcrg
Upstream genePou6f2, Vps41, Amph, LOC624044, Tcrg-V4, LOC624071
Downstream geneTcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730, Elmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033L22.bB6Ng01-033L22.g
ACCDH862709DH862710
length1,136778
definitionDH862709|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L22, 5' end.DH862710|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,414,798 - 19,415,620)(67,924,389 - 67,924,885)
sequence
gaattcagatggacatcagaacatcagaaggcctttgaaaatattaagga
ggcgctgctgactgtgccagccttggcattgccagatctaaccaaaccct
gcatcctctatgttgatgagaggccgtggggggtcagaggagttcttact
caggctctagggccctggaagaggcgggtagcatattcgtctaagaagct
ggacccagtggccaggagatggcccacatgtttaaaggctgttgctgcag
tagcactactcattaaggatgctgacaaattaactctcggacagcaaata
actggggaagcccctcactcacttgaaagcactatttgtcagcccccaga
cctatggatggcaaatgcctggatgactcactaccagagtctgctgctga
ctgaacgggtcatgtttgctcttcctgctattctcaatcctgccaccttt
ctgcctgaaacggacaactcctcacccggtcactgctgtgcagaggaaat
tgggattcaaagtgatctatgtggccagccatggccaggtgttccaaact
ggtatacagacagaagcagtttcctagtggaaggtaagagaatggcaggg
gctgcagtggtagatggtaagcgagatgtgtgggctggcagcctgcagga
aggtaagtcagctcaaaaagctgaattaattgccctgactcaggcccttt
agattgctgaaggacagtccatcaatatttacacagatagcaggtatgtt
tttgctacagcctatgtccacgttgccatgtataggcaaagagggttgct
gacgtcagcaggcaaggaaataaaaaataaagaggagattctgagcctcc
ttgaggctattcatctgcctgccaaagtggccatatacattttccagggc
atcaaaaaggacacaatgctgtgacaaggggtaaaaacattgctgacgtt
aaagctaacaggctgcacttgtctctaagatactgcccttcaggactcat
tactgcccttcaggactcaacagatagaacctctccaggccctagaactg
tcttcagacttatatctgcctcaggatcacagtgaacctctccgaaggtg
ctctgcgaaaccacaaagaaggaagattggaaaata
gaattccaaaaaaatcaaataaccctattaaaaatggggtacagagctaa
acaaagaattctcaactgaggaatacagaatgtatgagaagcaaaaagat
gttcaacatccttaatcatcagagagatacaaatcaaaacacccttgaga
ttccatccacctcacaccagtcagaatggctaagatcaaaaattcaggtg
acagtagatgctggcggggatgtggagaaaaaggaaaactcctccattat
tggtgagattgcaagctggtacaaccactctggaaatcagtgtggtggtt
ccacagaaaattggacatagtaatacaggaagatccgtcaatacctctcc
tgggcatatacccagaagatgttccaacttgtaataaagacacatgctcc
actatgttcatagcagcctaatttataatagccagaagatggaatctctc
acctcccaggtctctggtgcattacaggacatccttgaaacatcctattt
cctgagtttgcctatttcccttatttctgctggccctcaaggcttcagta
tttttcccttatccaataccagatcagaaaacatcccccactctaaccct
ttccactttcccttccattttctttcttttctcccaacttgtggttgctt
tcttctccctctcaattaggtccgaggcgtcttcacttgggtacttcagg
ttgttgagctctttgagttctgtggactgtatgtatcctgtgtattctgt
attttttgttgttgttgttgtttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19414798_19415620
seq2: B6Ng01-033L22.b_555_1183

seq1  CAAAGTGATCTACGTGACCAGCTGTGGCCAGGTGTTCCAAACTGGTACAC  50
      |||||||||||| ||| |||||  ||||||||||||||||||||||| ||
seq2  CAAAGTGATCTATGTGGCCAGCCATGGCCAGGTGTTCCAAACTGGTATAC  50

seq1  AGATGGAAGCAGTTTCCTAGTAGAAGGTAAGAGGATGGCAGGGGCGGTGG  100
      |||  |||||||||||||||| ||||||||||| ||||||||||| |  |
seq2  AGACAGAAGCAGTTTCCTAGTGGAAGGTAAGAGAATGGCAGGGGCTGCAG  100

seq1  TGGTAAATGGTAAGCGACTCGTGTGGGCTGGCAGCCTGCCAGAAGGTACG  150
      ||||| |||||||||||   |||||||||||||||||||  ||||||| |
seq2  TGGTAGATGGTAAGCGAGATGTGTGGGCTGGCAGCCTGCAGGAAGGTAAG  150

seq1  TCAGCTCAAAAAGCTGAATTAATTGCCCTGATCCAGGCCCTTCAGATGGC  200
      |||||||||||||||||||||||||||||||  ||||||||| |||| ||
seq2  TCAGCTCAAAAAGCTGAATTAATTGCCCTGACTCAGGCCCTTTAGATTGC  200

seq1  TGAGGGGCAGTCCATCAACATTTACACCGATAGCAGGTATGCTTTTGCTA  250
      ||| || ||||||||||| |||||||| ||||||||||||| ||||||||
seq2  TGAAGGACAGTCCATCAATATTTACACAGATAGCAGGTATGTTTTTGCTA  250

seq1  CAGCCCACATCCACGGTGCCATCTATAGACAAAGAGGCTTGCTGACGTCA  300
      ||||| |  |||||| |||||| ||||| |||||||| ||||||||||||
seq2  CAGCCTATGTCCACGTTGCCATGTATAGGCAAAGAGGGTTGCTGACGTCA  300

seq1  GCAGGCAAGGACATAAAAAAATAAAGAGGAGATTCTGAGCCTCCTTGAGG  350
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  GCAGGCAAGGAAAT-AAAAAATAAAGAGGAGATTCTGAGCCTCCTTGAGG  349

seq1  CTATTTATCTGCCTGCCAAAGTGGCCATTATACATTGTCCTGGACATCAA  400
      ||||| ||||||||||||||||||||| |||||||| ||| || ||||||
seq2  CTATTCATCTGCCTGCCAAAGTGGCCA-TATACATTTTCCAGGGCATCAA  398

seq1  AAAGGACACGATGCTGTGACAAGGGGGAATAACATGCCTGATGCT-AAGC  449
      ||||||||| |||||||||||||||| || |||||  |||| | | ||||
seq2  AAAGGACACAATGCTGTGACAAGGGGTAAAAACATTGCTGACGTTAAAGC  448

seq1  TAAACAGGCTGCACTCGGCCCTAATATACTGCCCTTCAGGACTCAATACT  499
      | ||||||||||||| | | |||| |||||||||||||||||||| ||||
seq2  T-AACAGGCTGCACTTGTCTCTAAGATACTGCCCTTCAGGACTCATTACT  497

seq1  GCCCTTCAGGACTCAGTACTGCCCTTCAGGACTCAATACTGCCCTTCAGG  549
      |||||||||||||||           |||      ||          || 
seq2  GCCCTTCAGGACTCA----------ACAG------AT----------AGA  521

seq1  ACTCAATACTGCCCTTCAGACTTAATACTGCCCTTCAGAACTCAATACTG  599
      ||         | || |||          |||||  ||||||        
seq2  AC---------CTCTCCAG----------GCCCT--AGAACT--------  542

seq1  CCCTTCAGGTCTCAATACTGCCCTTCAGGACTCAATACTGCCCTTCAGAC  649
              ||                                ||||||||
seq2  --------GT--------------------------------CTTCAGAC  552

seq1  TCAATACTGCCCTTCAGAACTCAATACTGCCCTTCAGAACTCAATACTGC  699
      | |   |||||                                       
seq2  TTATATCTGCC---------------------------------------  563

seq1  CCTTCAGAACTCAATACTGCCCTTCAGGACTCAATACTGCCCTTCAGGAC  749
                                                 |||||| 
seq2  -------------------------------------------TCAGGA-  569

seq1  TCCACAGATAGAACCTCTCCAGAAAGTTGCTCTGCCAGAACCACAAAAAG  799
        |||||   ||||||||||   ||| |||||||| | ||||||  ||||
seq2  -TCACAG--TGAACCTCTCC--GAAGGTGCTCTGCGA-AACCAC--AAAG  611

seq1  AAGGGAAAAGATTTATTGAAAATA  823
      ||||   |||||   | |||||||
seq2  AAGG---AAGAT---TGGAAAATA  629

seq1: chr1_67924389_67924885
seq2: B6Ng01-033L22.g_406_844 (reverse)

seq1  AAACAAAACCAACAACAACAACAAAAAAAACCCAATTTTTTTCTTTTTTG  50
      |||||||  ||||||||||||||||||| ||  ||               
seq2  AAACAAA--CAACAACAACAACAAAAAATACAGAA---------------  33

seq1  TTTTTATTGGATATTTTC--TTTATTTAACT---------------CCT-  82
        |  |  |||||  | |  |  |   ||||               ||| 
seq2  --TACACAGGATACATACAGTCCACAGAACTCAAAGAGCTCAACAACCTG  81

seq1  -----TCCATGT----ATGTTTTGCTCTCAATTCTAAGAAGGGG--CAAA  121
            ||| ||    | |  | |  |  |||  | ||| || |   |||
seq2  AAGTACCCAAGTGAAGACGCCTCGGACCTAAT--TGAGAGGGAGAAGAAA  129

seq1  GTGTCCACACTTTGATTTTTCTTCTTCTTGAG------TTTCATGTGTTT  165
      |   |||||  |||               |||          |  ||   
seq2  GCAACCACAAGTTG--------------GGAGAAAAGAAAGAAAATGGAA  165

seq1  TGCAAATTGTATCTTG-TATCTTGGGTATTCTAAGTTTCTGAACTAATGT  214
       | ||| || |    | ||   ||||   | |   ||||||| ||  | |
seq2  GGGAAAGTGGAAAGGGTTAGAGTGGGGGATGT---TTTCTGATCTGGTAT  212

seq1  CCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGATTGGGTTAC  264
            || || ||  | |||     |||   ||    |||  |||  | 
seq2  ---TGGATAAGGGA-AAAATA----CTGAAGCCT----TGA--GGGCCAG  248

seq1  CTCACTCAGGATGAGTATGCCTAGGAATTTCATAAATTCATTCTTTTTAA  314
      |  |   | |   | || ||     ||  |||  || | |   | ||| |
seq2  CAGAAATAAGGGAAATAGGC-----AAACTCAGGAAAT-AGGATGTTTCA  292

seq1  TAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTTCGTATCCAT  364
        | ||        |||    ||| |||| |||| |    | | |     
seq2  AGGATG--------TCC----TGT-AATGCACCAGAGACCTGGGA-----  324

seq1  TCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAA  414
            | |||| ||            ||||| |||||||||||||||||
seq2  ------GGTGAGAGA------------TTCCATCTTCTGGCTATTATAAA  356

seq1  TAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATTACATGTTGGTG  464
      | ||||||||||||||||||||||||||||||| |||||||| |||||  
seq2  TTAGGCTGCTATGAACATAGTGGAGCATGTGTCTTTATTACAAGTTGGAA  406

seq1  CATCTTCTGGATATATGCCCAGGAGAGGTATTG  497
      |||||||||| ||||||||||||||||||||||
seq2  CATCTTCTGGGTATATGCCCAGGAGAGGTATTG  439