BAC Information

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BAC

Clone NameB6Ng01-033M06
Chromosome13 (Build37)
Map Location 50,198,958 - 50,334,993
singlet/doubletdoublet
Overlap geneLOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546
Downstream geneGm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033M06.bB6Ng01-033M06.g
ACCDH862725DH862726
length1,033900
definitionDH862725|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M06, 5' end.DH862726|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,198,958 - 50,199,999)(50,334,089 - 50,334,993)
sequence
gaattctgaaattaaccaaaacaaattatcatctcctagcaaaatcattc
cctgtcttaaacatgaggcaattcatactcagctgctgtgaacattttga
agcagccacatatctcatacctgagactaaaacaaaagattatattctta
tgttactttttaaaaaaaataccaaaattgtcactaaaccagtgttccta
gaaaatgtgaaagcaacagccatgaacaacagactgctgccccattgtgt
ataaaccaaggctctcctcacctgtggtttgtcccattcattctcagatg
ctggtgacactgggtactccttcaggaaggggataagtaggaaaaagagc
ccaactccacacataaagccaatgttcatgtccattgctatgtccatgga
gctgttgctcatccatgaatcaataatgctattcatcagagagagaaaat
tctccatcttctgaattgcaatgcagctctcaggctactgagtccttgag
tgcagtgtgagatgtgtcaggagggctcatggcacatcacacaggtgtgg
cctcctcatcacaaagggctgctggcagtagagaggctgccacagcccct
ccccagcctccaggacaaggtcacctcctgtgtccttttcctgcttcctt
ttttccaaatcctgctgctgagtcaggcaaaaatagacctctggccacgt
tttgttccttatccctgagtatcagtgctcctctgtgtaggcatttgttt
tgttcagcctactttaacaagggttaaaatccctctagcccacaagccac
cagatgaagtgggaaagaaaggttgttaggatatgggggaagcagaccta
tatagaaatagttctattgggccattacaaacttagttggtctgagtcca
gttccctagcaaacaccaaacaggaatcagttcctgcagacagtccactg
ggcagacaccacacagagtcagcagggcagttgaatgcagccgattctgt
gagctgcaatgagtctgatcaagaagcagcaaa
gaattccttcccaggcatctctttgcctatgggctctgaggaacgactct
ctaacaggcctggcacttaggcaggtgctctaagtgtgggacctccagac
aatcacggtctcagactgacttctgtgagggcagagagtaggcctcaact
gtgtgcactgtggagggggagggaattactatgagacctggttctgcctg
ttgttttctttaacagataggagaaatatgaactcgttgctaatgtgcag
aagcctggtggatcaggatctgaagacaaaaatgtacattagttttgatt
gtactaaataataacaaatctaaataaataagtgacaaaaggaagttttg
tgtctgagttgagacaatctgtgatcacagaatgaacagacagggttctg
cagatagaagacaatgtgaaagtgacaataccaaagaaacaactcaagtt
ctattgagaagctcactttgtcaaaaactaagaacctgatctactcaagt
aggtatcttctaggaggcaaacatacaatgtaactttctggttgacacct
gaaagactccaaaaataatgtttggctgaagcagacacgggtgaaataat
gtttcctataggaatcatatggaatgacgaataatgtttagatggaacat
taatattatcccacagacagtgggagcttgaggtttggtttgccttgctc
attagtgaagaggacatggtatgcaagaaagaagtgggggcttgtggaaa
ggaaataagaattatggaatcctcaggttttgggatagaaaggagctgtg
gttggctgggatgggtgctacaatgagagtgtttttcaaggcactggagt
gatgctgtgaccctggatggggggacccaagtcactgaagcaggtaggtc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50198958_50199999
seq2: B6Ng01-033M06.b_47_1079

seq1  GAATTCTGAAATTAACCAAAACAAATTATCATCTCCTAGCAAAATCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAATTAACCAAAACAAATTATCATCTCCTAGCAAAATCATTC  50

seq1  CCTGTCTTAAACATGAGGCAATTCATACTCAGCTGCTGTGAACATTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTAAACATGAGGCAATTCATACTCAGCTGCTGTGAACATTTTGA  100

seq1  AGCAGCCACATATCTCATACCTGAGACTAAAACAAAAGATTATATTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCACATATCTCATACCTGAGACTAAAACAAAAGATTATATTCTTA  150

seq1  TGTTACTTTTTAAAAAAAATACCAAAATTGTCACTAAACCAGTGTTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTTTTAAAAAAAATACCAAAATTGTCACTAAACCAGTGTTCCTA  200

seq1  GAAAATGTGAAAGCAACAGCCATGAACAACAGACTGCTGCCCCATTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGAAAGCAACAGCCATGAACAACAGACTGCTGCCCCATTGTGT  250

seq1  ATAAACCAAGGCTCTCCTCACCTGTGGTTTGTCCCATTCATTCTCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCAAGGCTCTCCTCACCTGTGGTTTGTCCCATTCATTCTCAGATG  300

seq1  CTGGTGACACTGGGTACTCCTTCAGGAAGGGGATAAGTAGGAAAAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGACACTGGGTACTCCTTCAGGAAGGGGATAAGTAGGAAAAAGAGC  350

seq1  CCAACTCCACACATAAAGCCAATGTTCATGTCCATTGCTATGTCCATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCACACATAAAGCCAATGTTCATGTCCATTGCTATGTCCATGGA  400

seq1  GCTGTTGCTCATCCATGAATCAATAATGCTATTCATCAGAGAGAGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGCTCATCCATGAATCAATAATGCTATTCATCAGAGAGAGAAAAT  450

seq1  TCTCCATCTTCTGAATTGCAATGCAGCTCTCAGGCTACTGAGTCCTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTTCTGAATTGCAATGCAGCTCTCAGGCTACTGAGTCCTTGAG  500

seq1  TGCAGTGTGAGATGTGTCAGGAGGGCTCATGGCACATCACACAGGTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGAGATGTGTCAGGAGGGCTCATGGCACATCACACAGGTGTGG  550

seq1  CCTCCTCATCACAAAGGGCTGCTGGCAGTAGAGAGGCTGCCACAGCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCATCACAAAGGGCTGCTGGCAGTAGAGAGGCTGCCACAGCCCCT  600

seq1  CCCCAGCCTCCAGGACAAGGTCACCTCCTGTGTCCTTTTCCTGCTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCTCCAGGACAAGGTCACCTCCTGTGTCCTTTTCCTGCTTCCTT  650

seq1  TTTTCCAAATCCTGCTGCTGAGTCAGGCAAAAATAGACCTCTGGCCACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAATCCTGCTGCTGAGTCAGGCAAAAATAGACCTCTGGCCACGT  700

seq1  TTTGTTCCTTATCCCTGAGTATCAGTGCTCCTCTGTGTAGGCATTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTTATCCCTGAGTATCAGTGCTCCTCTGTGTAGGCATTTGTTT  750

seq1  TGTTCAGCCTACTTTAACAAGGGTTAAAATCCCTCTAGCCCACAAGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCCTACTTTAACAAGGGTTAAAATCCCTCTAGCCCACAAGCCAC  800

seq1  CAGATGAAGTGGGAAAGAAAGGTTGTTAGGATATGGGGGAAGCAGACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGTGGGAAAGAAAGGTTGTTAGGATATGGGGGAAGCAGACCTA  850

seq1  TATAGAAATAGTTCTATTGGGCCATTACAAACTTAGTTGGTCTGAGTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAATAGTTCTATTGGGCCATTACAAACTTAGTTGGTCTGAGTCCA  900

seq1  GTTCCCTAGCAAACACCAAACAGGAATCAGTTCCTGCAGACCAGTCCACT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTCCCTAGCAAACACCAAACAGGAATCAGTTCCTGCAGA-CAGTCCACT  949

seq1  GGGCAGACACCACACAAGAGTCAGCAAGGGCAGTTGAATGCAGCCGATTC  1000
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  GGGCAGACACCACAC-AGAGTCAGC-AGGGCAGTTGAATGCAGCCGATTC  997

seq1  TGTGAGGCTGCCAATGAAGTCTGAGTCCAAGGAAGCAGCAAA  1042
      ||||| |||| ||||| ||||||| ||  | |||||||||||
seq2  TGTGA-GCTG-CAATG-AGTCTGA-TC--AAGAAGCAGCAAA  1033

seq1: chr13_50334089_50334993
seq2: B6Ng01-033M06.g_64_962 (reverse)

seq1  ACCTACCTGCTGTCAGGTGAACTTGGGTTCCCCCCATCCAGGGTCACAGC  50
      ||||||||||| ||| ||| ||||||| ||||||||||||||||||||||
seq2  ACCTACCTGCT-TCA-GTG-ACTTGGG-TCCCCCCATCCAGGGTCACAGC  46

seq1  ATCACTCCAGTGCCTTGAAAAACACTCTCATGTGTAGCACCCATCCCAGG  100
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  ATCACTCCAGTGCCTTGAAAAACACTCTCAT-TGTAGCACCCATCCCA-G  94

seq1  CCAACCACAGCTCCTTTCTATCCCAAAACCTGAGGATTCCATAATTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACAGCTCCTTTCTATCCCAAAACCTGAGGATTCCATAATTCTTA  144

seq1  TTTCCTTTCCACAAGCCCCCACTTCTTTCTTGCATACCATGTCCTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCACAAGCCCCCACTTCTTTCTTGCATACCATGTCCTCTTCA  194

seq1  CTAATGAGCAAGGCAAACCAAACCTCAAGCTCCCACTGTCTGTGGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGCAAGGCAAACCAAACCTCAAGCTCCCACTGTCTGTGGGATAA  244

seq1  TATTAATGTTCCATCTAAACATTATTCGTCATTCCATATGATTCCTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGTTCCATCTAAACATTATTCGTCATTCCATATGATTCCTATAG  294

seq1  GAAACATTATTTCACCCGTGTCTGCTTCAGCCAAACATTATTTTTGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTATTTCACCCGTGTCTGCTTCAGCCAAACATTATTTTTGGAGT  344

seq1  CTTTCAGGTGTCAACCAGAAAGTTACATTGTATGTTTGCCTCCTAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGTGTCAACCAGAAAGTTACATTGTATGTTTGCCTCCTAGAAGA  394

seq1  TACCTACTTGAGTAGATCAGGTTCTTAGTTTTTGACAAAGTGAGCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTTGAGTAGATCAGGTTCTTAGTTTTTGACAAAGTGAGCTTCTC  444

seq1  AATAGAACTTGAGTTGTTTCTTTGGTATTGTCACTTTCACATTGTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACTTGAGTTGTTTCTTTGGTATTGTCACTTTCACATTGTCTTCT  494

seq1  ATCTGCAGAACCCTGTCTGTTCATTCTGTGATCACAGATTGTCTCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGAACCCTGTCTGTTCATTCTGTGATCACAGATTGTCTCAACTC  544

seq1  AGACACAAAACTTCCTTTTGTCACTTATTTATTTAGATTTGTTATTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAAACTTCCTTTTGTCACTTATTTATTTAGATTTGTTATTATTT  594

seq1  AGTACAATCAAAACTAATGTACATTTTTGTCTTCAGATCCTGATCCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATCAAAACTAATGTACATTTTTGTCTTCAGATCCTGATCCACCA  644

seq1  GGCTTCTGCACATTAGCAACGAGTTCATATTTCTCCTATCTGTTAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGCACATTAGCAACGAGTTCATATTTCTCCTATCTGTTAAAGAA  694

seq1  AACAACAGGCAGAACCAGGTCTCATAGTAATTCCCTCCCCCTCCACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGGCAGAACCAGGTCTCATAGTAATTCCCTCCCCCTCCACAGTG  744

seq1  CACACAGTTGAGGCCTACTCTCTGCCCTCACAGAAGTCAGTCTGAGACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTTGAGGCCTACTCTCTGCCCTCACAGAAGTCAGTCTGAGACCG  794

seq1  TGATTGTCTGGAGGTCCCACACTTAGAGCACCTGCCTAAGTGCCAGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCTGGAGGTCCCACACTTAGAGCACCTGCCTAAGTGCCAGGCCT  844

seq1  GTTAGAGAGTCGTTCCTCAGAGCCCATAGGCAAAGAGATGCCTGGGAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAGTCGTTCCTCAGAGCCCATAGGCAAAGAGATGCCTGGGAAGG  894

seq1  AATTC  905
      |||||
seq2  AATTC  899