BAC Information

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BAC

Clone NameB6Ng01-034N04
Chromosome13 (Build37)
Map Location 21,589,393 - 21,734,666
singlet/doubletdoublet
Overlap geneLOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302
Downstream geneOlfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034N04.bB6Ng01-034N04.g
ACCDH863460DH863461
length849920
definitionDH863460|Mus musculus domesticus DNA, BAC clone: B6Ng01-034N04, 5' end.DH863461|Mus musculus domesticus DNA, BAC clone: B6Ng01-034N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,733,800 - 21,734,666)(21,589,393 - 21,590,316)
sequence
gaattctcttggcttctttacaagaggaaacaaattcctaccttgatgcc
acaaaattgaatctttactgcagtagaagtatttcagtccctattgtcat
tcccttttgtcttggacacaagtgaggagaaggtccccagggaaagagta
ttgcagaacagatgtgaaagaaagatgaaaggccaagtcacacagaactc
ccactgggtatcgcccttggttataacaagtgttgctgtcctcctggaca
gaccagagcacagagcagctcttggggaatctccctccagtcactcactg
tgcagtcttggttgggaggattctgaaaccagactctcaatgcccattct
gcaacacaatgaaaacacatgttccagttgcctgcaagactttcttattc
tcttgttttctgatttactcctgaaggaagattatttatagcttgttact
gaacagtagaatgaaggggtggagaacgcttcatcacaccaggttgatgt
tgaagagcttatgaagattttattggagctgcatacttttaaagcatcca
ttttttttatttcaaagttccttgaactagcaaacagacacaagccatgg
ggtctcaaggctccaagtggggtttgtagagtcttttcttaaatgttgtt
taaaacatagtggaaaaagaagaactgaaatagggcttgcaatggtgaca
tacagattgcttactatcacagaatagaatttgactcagtctcattcctc
cttacattactttcacagtggtatcttggggcatgcttgtcctccactga
aaaacaattagagctgagcagccttagcttcacctgattgctgctgcag
gaattccagagccacaactttgagatgaagggttttttttcttgttattt
tgttttgttttgttttgttttctacttgctcaaggtcacaggaactggag
ttttggtttgtttgtttttttttaacaagctctgtctttggctgctcagt
catcattcttactgaatctgatagaacctagtggagaaaccccccccact
cgattcctgagcacccaaaaaaatcacgaaggaccattttgatgtaacta
cacgaggtagtttaattacagagctctggaccgacatgcatcccacacag
gagataacggatgtcggccacgaggctcgaaagctagggttttttatggg
gtaaggggcttaggggtgtggaattcagcatagcgacacactattggctt
attcaaacatcagcagaaaaattacatatatgtgcagggtgtcagagttc
tgtgagttgttgactcagttcagatagccctgttatgtcttcacattccc
ctttatcttatgatcaagatgttcccaggaatgttttaactacggggcat
acccaggtttgtttttcttttttctcagccccaggcagcctctaagctca
caaacaaccagcaatttctgagtactttatatgacttacaggtgttgaaa
tttcatttttcttccaaatcccgagtatctggtgaacactgaaatatcag
gtactagaatttgaaacataccctctgctttcagggggacataaccaagt
tagaatggtttaaggtttgtttgaaatacttaaggctcgttgaaatccct
ttgaaatagctcatgccttttccccagctctagagagtataggcagaaag
acaaattggatagatcctgcgggaccctaatgctggacggggtggtttct
caggtgcgcctggggcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21733800_21734666
seq2: B6Ng01-034N04.b_47_895 (reverse)

seq1  CTGCAGGCAGCAATCAGGTGAGAGCTAAGGCTGCTCAGCTCCTAAATTTG  50
      ||||| ||||||||||||||| |||||||||||||||||| ||||  |||
seq2  CTGCA-GCAGCAATCAGGTGA-AGCTAAGGCTGCTCAGCT-CTAA--TTG  45

seq1  TTTTTCAGTAGAGGACCAACGCATGCCCCCAGATACCCACTGTGAGAAAG  100
      ||||||||| ||||||  | ||||||||| ||||| |||||||  |||||
seq2  TTTTTCAGTGGAGGAC--AAGCATGCCCCAAGATA-CCACTGT--GAAAG  90

seq1  TAAATGTAAGGAGGAAATTGAGACTGAGTCAAAATTTCCTATTCTGTGAT  150
      | ||||||||||||||  |||||||||||||||   | ||||||||||||
seq2  T-AATGTAAGGAGGAA--TGAGACTGAGTCAAA---TTCTATTCTGTGAT  134

seq1  AGTAAGCAATCTGTATGTCA-CATTGCCAAGCCCCTAATTTCAGTTTCTC  199
      |||||||||||||||||||| ||||| |||||||   |||||||||  ||
seq2  AGTAAGCAATCTGTATGTCACCATTG-CAAGCCC--TATTTCAGTTCTTC  181

seq1  TTTTTCCACTATGTTTTACACAACATTTTAAGAAAGAACTCTACATACCC  249
      |||||||||||||||||| |||||| |||||||||  |||||||| ||||
seq2  TTTTTCCACTATGTTTTAAACAACA-TTTAAGAAAAGACTCTACAAACCC  230

seq1  CACTTGGAGCCTTGAGACCCCATGGCTTGTGTCTGTTTGCTAGTTCAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAGCCTTGAGACCCCATGGCTTGTGTCTGTTTGCTAGTTCAAGG  280

seq1  AACTTTGAAAT-AAAAAAATGGATGCTTTAAAAGTATGCAGCTCCAATAA  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAAATAAAAAAAATGGATGCTTTAAAAGTATGCAGCTCCAATAA  330

seq1  AATCTTCATAAGCTCTTCAACATCAACCTGGTGTGATGAAGCGTTCTCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCATAAGCTCTTCAACATCAACCTGGTGTGATGAAGCGTTCTCCA  380

seq1  CCCCTTCATTCTACTGTTCAGTAACAAGCTATAAATAATCTTCCTTCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCATTCTACTGTTCAGTAACAAGCTATAAATAATCTTCCTTCAGG  430

seq1  AGTAAATCAGAAAACAAGAGAATAAGAAAGTCTTGCAGGCAACTGGAACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATCAGAAAACAAGAGAATAAGAAAGTCTTGCAGGCAACTGGAACA  480

seq1  TGTGTTTTCATTGTGTTGCAGAATGGGCATTGAGAGTCTGGTTTCAGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCATTGTGTTGCAGAATGGGCATTGAGAGTCTGGTTTCAGAAT  530

seq1  CCTCCCAACCAAGACTGCACAGTGAGTGACTGGAGGGAGATTCCCCAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAACCAAGACTGCACAGTGAGTGACTGGAGGGAGATTCCCCAAGA  580

seq1  GCTGCTCTGTGCTCTGGTCTGTCCAGGAGGACAGCAACACTTGTTATAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTGTGCTCTGGTCTGTCCAGGAGGACAGCAACACTTGTTATAAC  630

seq1  CAAGGGCGATACCCAGTGGGAGTTCTGTGTGACTTGGCCTTTCATCTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCGATACCCAGTGGGAGTTCTGTGTGACTTGGCCTTTCATCTTTC  680

seq1  TTTCACATCTGTTCTGCAATACTCTTTCCCTGGGGACCTTCTCCTCACTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCTGTTCTGCAATACTCTTTCCCTGGGGACCTTCTCCTCACTT  730

seq1  GTGTCCAAGACAAAAGGGAATGACAATAGGGACTGAAATACTTCTACTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAAGACAAAAGGGAATGACAATAGGGACTGAAATACTTCTACTGC  780

seq1  AGTAAAGATTCAATTTTGTGGCATCAAGGTAGGAATTTGTTTCCTCTTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGATTCAATTTTGTGGCATCAAGGTAGGAATTTGTTTCCTCTTGT  830

seq1  AAAGAAGCCAAGAGAATTC  867
      |||||||||||||||||||
seq2  AAAGAAGCCAAGAGAATTC  849

seq1: chr13_21589393_21590316
seq2: B6Ng01-034N04.g_69_988

seq1  GAATTCCAGAGCCACAACTTTGAGATGAAGGGTTTTTTTTCTTGTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCACAACTTTGAGATGAAGGGTTTTTTTTCTTGTTATTT  50

seq1  TGTTTTGTTTTGTTTTGTTTTCTACTTGCTCAAGGTCACAGGAACTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTCTACTTGCTCAAGGTCACAGGAACTGGAG  100

seq1  TTTTGGTTTGTTTGTTTTTTTTTAACAAGCTCTGTCTTTGGCTGCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTGTTTGTTTTTTTTTAACAAGCTCTGTCTTTGGCTGCTCAGT  150

seq1  CATCATTCTTACTGAATCTGATAGAACCTAGTGGAGAAACCCCCCCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCTTACTGAATCTGATAGAACCTAGTGGAGAAACCCCCCCCACT  200

seq1  CGATTCCTGAGCACCCAAAAAAATCACGAAGGACCATTTTGATGTAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCCTGAGCACCCAAAAAAATCACGAAGGACCATTTTGATGTAACTA  250

seq1  CACGAGGTAGTTTAATTACAGAGCTCTGGACCGACATGCATCCCACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGTAGTTTAATTACAGAGCTCTGGACCGACATGCATCCCACACAG  300

seq1  GAGATAACGGATGTCGGCCACGAGGCTCGAAAGCTAGGGTTTTTTATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAACGGATGTCGGCCACGAGGCTCGAAAGCTAGGGTTTTTTATGGG  350

seq1  GTAAGGGGCTTAGGGGTGTGGAATTCAGCATAGCGACACACTATTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGGCTTAGGGGTGTGGAATTCAGCATAGCGACACACTATTGGCTT  400

seq1  ATTCAAACATCAGCAGAAAAATTACATATATGTGCAGGGTGTCAGAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACATCAGCAGAAAAATTACATATATGTGCAGGGTGTCAGAGTTC  450

seq1  TGTGAGTTGTTGACTCAGTTCAGATAGCCCTGTTATGTCTTCACATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTGTTGACTCAGTTCAGATAGCCCTGTTATGTCTTCACATTCCC  500

seq1  CTTTATCTTATGATCAAGATGTTCCCAGGAATGTTTTAACTACGGGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTTATGATCAAGATGTTCCCAGGAATGTTTTAACTACGGGGCAT  550

seq1  ACCCAGGTTTGTTTTTCTTTTTTCTCAGCCCCAGGCAGCCTCTAAGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTTTGTTTTTCTTTTTTCTCAGCCCCAGGCAGCCTCTAAGCTCA  600

seq1  CAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTGTTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTGTTGAAA  650

seq1  TTTCATTTTTCTTCCAAATCCCGAGTATCTGGTGAACACTGAAATATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTCTTCCAAATCCCGAGTATCTGGTGAACACTGAAATATCAG  700

seq1  GTACTAGAATTTGAAACATACCCTCTGCTTTCAAGGGGGACATAACCAAG  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTACTAGAATTTGAAACATACCCTCTGCTTTC-AGGGGGACATAACCAAG  749

seq1  TTAGAATGGTTTAAGGTTTG-TTGAAATACTTAAGGCTCGGTGAAATCCC  799
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  TTAGAATGGTTTAAGGTTTGTTTGAAATACTTAAGGCTCGTTGAAATCCC  799

seq1  -TTGAAATAGCTCATGCCTTTTCCCCAGCTCTAGAGAGGTATAGGCAGAA  848
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTGAAATAGCTCATGCCTTTTCCCCAGCTCTAGAGA-GTATAGGCAGAA  848

seq1  AGACAAATTGGAATAGAACCTGCGGGACCCTAGTGCTGGATGGGGTGGTT  898
      ||||||||||| ||||| |||||||||||||| ||||||| ||||||| |
seq2  AGACAAATTGG-ATAGATCCTGCGGGACCCTAATGCTGGACGGGGTGG-T  896

seq1  TTCTCAGGGTGTCGCCTGGGGCTTGA  924
      |||||| |||| ||||||||||||||
seq2  TTCTCA-GGTG-CGCCTGGGGCTTGA  920