BAC Information

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BAC

Clone NameB6Ng01-035B04
Chromosome13 (Build37)
Map Location 84,030,486 - 84,166,107
singlet/doubletdoublet
Overlap gene2810049E08Rik, LOC100043119, LOC667081
Upstream geneLOC667018, Mef2c, LOC100043111, LOC623241, LOC432789
Downstream geneLOC667101, Tmem161b, LOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035B04.bB6Ng01-035B04.g
ACCDH863641DH863642
length979790
definitionDH863641|Mus musculus domesticus DNA, BAC clone: B6Ng01-035B04, 5' end.DH863642|Mus musculus domesticus DNA, BAC clone: B6Ng01-035B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,165,102 - 84,166,107)(84,030,486 - 84,031,272)
sequence
gaattcccaacttttgaatcagcactcacagtatctgtgtaatttcacaa
cacgtaaaatctccacaaggagaggggtgtttgaataatggagttgttgg
caactgatacctgctcagagacagataatcagttttctgtaagggtatgg
ctcctagtgggttgaccatactccagtggtagtactcatccaagaataaa
tggtatcactaactgtaattgtctggttttcaaaaataccacctgaagta
gcgtgtatagcaaagtgatggtgaatctggggggaatgtaagaaggaagg
aagtatgaccataatgcgttgtataaaattctaaaagaattaataaacat
gaaaaaaagtaaaaaaaagagaatgttatcaagaaaaagaaagagggcct
ttcaagaatatcaagaattttcagtctctcaactctagataaaagaagga
agtaattgtgattggctttgaagggcatttttagctcgtctccagtgatg
ggcataggaaacccctagttctcccaggtcagtgcctaatgacacaaagg
gacatctacttctatcatcttttgcctgtgagcctgtattcactcttcat
ggctccagggcaaatataatgaaagtatctatatgaatcttccattcatt
ttactagctagtcaatgctctgaacacaattcctgggatataagtaatta
taagaataattattaaaatttgagtaagtacaactagagttaagcctttt
tgaatattttgtaaattgcttttaactttccaaaatctttatgatagaat
gtccatctggactctgaatgccatctctgagagatgccatgacagcaagc
acactggagcgcacacatctgggtgagatttgtgcatgaatgtgatgtgc
tgatcttggctctgatatgagctgtatctctctcagagctggatgcagca
gctgcatgtagcactgatgagcatgccat
gaattccagtgacatctattttttacattcccccccaacttgcgctgttt
ctttttactctcacaattcaactctagtgaatttaaaatgatcactttta
tactcttttatccatagatcacggccttactcaactcacttgagagaaac
tctcaagtagataagaacacagagatccacaacacatgaagacagtgaga
gactttggagcactcagtcctaaatatgatgtctttatcaaacctttccc
ctcagggatctatgcagaagaggagacacatttcaagagccagaggttat
gtatgactcaaaagaaaaaaaaatgtcttccaaacacaacaggactgttg
catatataaactcacagagactgtggcagcatgtcaaagttccacaaaga
ttcaagctagaggggaggctgatcatagacgccctacacccagctaagag
gctatctgcattgatgtccactggtaagacagaaattagtgttctccaat
gcattgtccctggacatatcaaccacaactgagggtaagccccatgctca
tgttttgtgttgtctaacacaaaacaaactcaatggcattttttttgggt
aaacttttgttccatgttgactttttttggcattttttgtcttatcagtg
ttttgcttgttttgattctggcctcttatatatatgttcacaacacctgt
agccatacatggagcatatacaccatacacatacacatgaacacacacac
acatgaattccccacatgcccacatacacgtgaacatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84165102_84166107
seq2: B6Ng01-035B04.b_45_1023 (reverse)

seq1  ATGGCAT-CAC-TCAGTGCTACATGGCAGCCTGGGCCTGCATCCAGCTCT  48
      ||||||| | | |||||||||||| |||| |||   ||||||||||||| 
seq2  ATGGCATGCTCATCAGTGCTACAT-GCAG-CTG---CTGCATCCAGCTC-  44

seq1  TGAGGAGAGATTAACAGCTCCATATCCAGGAGCACAGAGATCAGCACATC  98
      ||| |||||||  |||||| ||||||   |||| || |||||||||||| 
seq2  TGA-GAGAGAT--ACAGCT-CATATC--AGAGC-CA-AGATCAGCACAT-  85

seq1  CACATTCAATTGCAACAAATCTTCACCCAGGATGGTGTTGCGCTCCAGTG  148
      ||||||||  ||| ||||||| ||||||| ||| ||| ||||||||||||
seq2  CACATTCA--TGC-ACAAATC-TCACCCA-GAT-GTG-TGCGCTCCAGTG  128

seq1  TGCTTGCTGTCATGGGCATCTTCTCAGAGGATGGCATTCAGAGGTCCAGA  198
      ||||||||||||| |||||| ||||||| ||||||||||||| |||||||
seq2  TGCTTGCTGTCAT-GGCATC-TCTCAGA-GATGGCATTCAGA-GTCCAGA  174

seq1  TGGACATTCCTATCATAAAGATTTTTGGAAAGTTAAAAGCAATTTACAAA  248
      |||||||| |||||||||||| ||||||||||||||||||||||||| ||
seq2  TGGACATT-CTATCATAAAGA-TTTTGGAAAGTTAAAAGCAATTTAC-AA  221

seq1  AATATTCAAAAAGGCTTAACTCTAGTTGTACTTACTCAAATTTTAATAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAAAAAGGCTTAACTCTAGTTGTACTTACTCAAATTTTAATAAT  271

seq1  TATTCTTATAATTACTTATATCCCAGGAATTGTGTTCAGAGCATTGACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTATAATTACTTATATCCCAGGAATTGTGTTCAGAGCATTGACTA  321

seq1  GCTAGTAAAATGAATGGAAGATTCATATAGATACTTTCATTATATTTGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTAAAATGAATGGAAGATTCATATAGATACTTTCATTATATTTGCC  371

seq1  CTGGAGCCATGAAGAGTGAATACAGGCTCACAGGCAAAAGATGATAGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCATGAAGAGTGAATACAGGCTCACAGGCAAAAGATGATAGAAG  421

seq1  TAGATGTCCCTTTGTGTCATTAGGCACTGACCTGGGAGAACTAGGGGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTCCCTTTGTGTCATTAGGCACTGACCTGGGAGAACTAGGGGTTT  471

seq1  CCTATGCCCATCACTGGAGACGAGCTAAAAATGCCCTTCAAAGCCAATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCCCATCACTGGAGACGAGCTAAAAATGCCCTTCAAAGCCAATCA  521

seq1  CAATTACTTCCTTCTTTTATCTAGAGTTGAGAGACTGAAAATTCTTGATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACTTCCTTCTTTTATCTAGAGTTGAGAGACTGAAAATTCTTGATA  571

seq1  TTCTTGAAAGGCCCTCTTTCTTTTTCTTGATAACATTCTCTTTTTTTTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAAGGCCCTCTTTCTTTTTCTTGATAACATTCTCTTTTTTTTAC  621

seq1  TTTTTTTCATGTTTATTAATTCTTTTAGAATTTTATACAACGCATTATGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCATGTTTATTAATTCTTTTAGAATTTTATACAACGCATTATGG  671

seq1  TCATACTTCCTTCCTTCTTACATTCCCCCCAGATTCACCATCACTTTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTCCTTCCTTCTTACATTCCCCCCAGATTCACCATCACTTTGCT  721

seq1  ATACACGCTACTTCAGGTGGTATTTTTGAAAACCAGACAATTACAGTTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGCTACTTCAGGTGGTATTTTTGAAAACCAGACAATTACAGTTAG  771

seq1  TGATACCATTTATTCTTGGATGAGTACTACCACTGGAGTATGGTCAACCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCATTTATTCTTGGATGAGTACTACCACTGGAGTATGGTCAACCC  821

seq1  ACTAGGAGCCATACCCTTACAGAAAACTGATTATCTGTCTCTGAGCAGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAGCCATACCCTTACAGAAAACTGATTATCTGTCTCTGAGCAGGT  871

seq1  ATCAGTTGCCAACAACTCCATTATTCAAACACCCCTCTCCTTGTGGAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTGCCAACAACTCCATTATTCAAACACCCCTCTCCTTGTGGAGAT  921

seq1  TTTACGTGTTGTGAAATTACACAGATACTGTGAGTGCTGATTCAAAAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTGTTGTGAAATTACACAGATACTGTGAGTGCTGATTCAAAAGTT  971

seq1  GGGAATTC  1006
      ||||||||
seq2  GGGAATTC  979

seq1: chr13_84030486_84031272
seq2: B6Ng01-035B04.g_67_856

seq1  GAATTCCAGTGACATCTATTTTTTACATTCCCCCCCAACTTGCGCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGACATCTATTTTTTACATTCCCCCCCAACTTGCGCTGTTT  50

seq1  CTTTTTACTCTCACAATTCAACTCTAGTGAATTTAAAATGATCACTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACTCTCACAATTCAACTCTAGTGAATTTAAAATGATCACTTTTA  100

seq1  TACTCTTTTATCCATAGATCACGGCCTTACTCAACTCACTTGAGAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTTATCCATAGATCACGGCCTTACTCAACTCACTTGAGAGAAAC  150

seq1  TCTCAAGTAGATAAGAACACAGAGATCCACAACACATGAAGACAGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTAGATAAGAACACAGAGATCCACAACACATGAAGACAGTGAGA  200

seq1  GACTTTGGAGCACTCAGTCCTAAATATGATGTCTTTATCAAACCTTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGAGCACTCAGTCCTAAATATGATGTCTTTATCAAACCTTTCCC  250

seq1  CTCAGGGATCTATGCAGAAGAGGAGACACATTTCAAGAGCCAGAGGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATCTATGCAGAAGAGGAGACACATTTCAAGAGCCAGAGGTTAT  300

seq1  GTATGACTCAAAAGAAAAAAAAATGTCTTCCAAACACAACAGGACTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTCAAAAGAAAAAAAAATGTCTTCCAAACACAACAGGACTGTTG  350

seq1  CATATATAAACTCACAGAGACTGTGGCAGCATGTCAAAGTTCCACAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAAACTCACAGAGACTGTGGCAGCATGTCAAAGTTCCACAAAGA  400

seq1  TTCAAGCTAGAGGGGAGGCTGATCATAGACGCCCTACACCCAGCTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTAGAGGGGAGGCTGATCATAGACGCCCTACACCCAGCTAAGAG  450

seq1  GCTATCTGCATTGATGTCCACTGGTAAGACAGAAATTAGTGTTCTCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGCATTGATGTCCACTGGTAAGACAGAAATTAGTGTTCTCCAAT  500

seq1  GCATTGTCCCTGGACATATCAACCACAACTGAGGGTAAGCCCCATGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTCCCTGGACATATCAACCACAACTGAGGGTAAGCCCCATGCTCA  550

seq1  GGTTTTGTGTTGTCTAACACAAAACAAACTCAATGGCATTTTTTTTGGGT  600
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGTTGTCTAACACAAAACAAACTCAATGGCATTTTTTTTGGGT  600

seq1  AAACTTTTGTTCCATGTTGACTTTTTTTGGCATTTTTTGTCTTATCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGTTCCATGTTGACTTTTTTTGGCATTTTTTGTCTTATCAGTG  650

seq1  TTTTGCTTGTTTTGATTCTGGCCTCTTATATATATGTTCAC-ACACCTGT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTGCTTGTTTTGATTCTGGCCTCTTATATATATGTTCACAACACCTGT  700

seq1  AGCCATACAT-GAGCATATACACCATACACATACACATGAACACACACAC  748
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACATGGAGCATATACACCATACACATACACATGAACACACACAC  750

seq1  ACATGAATT-CACACATGCCCACATACACGTGAACATCTA  787
      ||||||||| | ||||||||||||||||||||||||||||
seq2  ACATGAATTCCCCACATGCCCACATACACGTGAACATCTA  790