BAC Information

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BAC

Clone NameB6Ng01-035C01
Chromosome13 (Build37)
Map Location 21,809,190 - 21,982,672
singlet/doubletdoublet
Overlap geneHist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634
Upstream geneLOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai
Downstream geneZfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035C01.bB6Ng01-035C01.g
ACCDH863683DH863684
length949883
definitionDH863683|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C01, 5' end.DH863684|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,809,190 - 21,810,130)(21,981,790 - 21,982,672)
sequence
gaattccagggggtcaatgttcttagagcctctttttaaagtcactacct
accttttacacatcttttcatttaatctgaagtaggaaaaagaaagtaag
aaaagtgcttttaataaaaattacattgatttaaacgaacctgcggcggg
attttcttttcaatgaggaaattgcacacttggttaaaccatgttcagac
tgcgaaaacaaaaggactcaccagccaattaagttgatctggcagccatt
ttgaccaatcagaactcggccgtctgtataaattttggtggttgaagctt
tccctccatcactttgctttggaagctcgggtgttaccatggctcgtact
aagcagaccgctcgcaagtccaccggcggcaaggccccgcgcaagcagct
ggccaccaaggccgcccgcaagagcgccccggccaccggcggcgtgaaga
agcctcaccgctaccgtcccggcaccgtggcgctgcgcgagatccggcgc
taccagaagtcgaccgagctgctgatccgcaagctgccgttccagcgcct
ggtgcgcgagatcgcgcaggacttcaagaccgacctgcgcttccagagct
cggccgtcatggctctgcaggaggcctgtgaggcctacctcgtgggtctg
tttgaggacaccaacctgggcgccatccacgccaagcgtgtcaccatcat
gcccaaagaacatccagcttgcccgccgcatccggcggggaagagggctt
aaagttcgtcctttctgtggtttttcaaaggcttctttttcagaagccac
ccaaaccttaaccaaaaggtgctgttgacttataggccaatttggagttt
tttcttggaacggtagcaaggttctaacagtttttcttagctgaggagtg
ctcttagagtgcctaagttgggtgagtattctgcaaattcatatactta
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttctttagttctttatatatattggatattagtccc
ctgtccgatttgtagaattgtgatagttaaatcttggttgtcaacttgac
agaatgtagaatcactttggagacaaatctctgtacatgtagtcatgtaa
ttcctccaggagacccaagcagctagtagctggggaccaaacatttgaat
gcttgaataccataccgtaatggttctgttgcagtcccttcttttctggg
caccattgcaatgagcagttttctaaatcactagattgtggctagagtgg
cacacctaagtaaggaatgtgccatgtgctgcttcccaaatgcaaaaggg
cttcctttttggatctatgagggttaggtgcagtaatttactcacatctc
taggttttcccaacatgtattacaccattggattcccaataggattccat
aggtaaaaggttgctaagttttggttggatgtatttccccacctctggaa
cacaatagctttgcagaaggaagatttcacactcacgggctatgtccata
tacatcacaatggatggatagatcagttacttttctccttgctcttatca
aatacctcaaaggaaagcagcttaatggaagaaagagtttgtttttggca
atatagttcagagcaaacagttcactggtgttggggagaatgtagttgat
gggaaccagctcccgctcctgaccctggcagcaaatgcttgctcacacct
tggtggaccagaagcaaaaatgggtgtgtcatctggtctctcccattccc
cttttaagtcgcggaaacataagccccatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21809190_21810130
seq2: B6Ng01-035C01.b_47_995

seq1  GAATTCCAGGGGGTCAATGTTCTTAGAGCCTCTTTTTAAAGTCACTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGGTCAATGTTCTTAGAGCCTCTTTTTAAAGTCACTACCT  50

seq1  ACCTTTTACACATCTTTTCATTTAATCTGAAGTAGGAAAAAGAAAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTACACATCTTTTCATTTAATCTGAAGTAGGAAAAAGAAAGTAAG  100

seq1  AAAAGTGCTTTTAATAAAAATTACATTGATTTAAACGAACCTGCGGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCTTTTAATAAAAATTACATTGATTTAAACGAACCTGCGGCGGG  150

seq1  ATTTTCTTTTCAATGAGGAAATTGCACACTTGGTTAAACCATGTTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTCAATGAGGAAATTGCACACTTGGTTAAACCATGTTCAGAC  200

seq1  TGCGAAAACAAAAGGACTCACCAGCCAATTAAGTTGATCTGGCAGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAAACAAAAGGACTCACCAGCCAATTAAGTTGATCTGGCAGCCATT  250

seq1  TTGACCAATCAGAACTCGGCCGTCTGTATAAATTTTGGTGGTTGAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAATCAGAACTCGGCCGTCTGTATAAATTTTGGTGGTTGAAGCTT  300

seq1  TCCCTCCATCACTTTGCTTTGGAAGCTCGGGTGTTACCATGGCTCGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCATCACTTTGCTTTGGAAGCTCGGGTGTTACCATGGCTCGTACT  350

seq1  AAGCAGACCGCTCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACCGCTCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCT  400

seq1  GGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGA  450

seq1  AGCCTCACCGCTACCGTCCCGGCACCGTGGCGCTGCGCGAGATCCGGCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACCGCTACCGTCCCGGCACCGTGGCGCTGCGCGAGATCCGGCGC  500

seq1  TACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCT  550

seq1  GGTGCGCGAGATCGCGCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGCGAGATCGCGCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCT  600

seq1  CGGCCGTCATGGCTCTGCAGGAGGCCTGTGAGGCCTACCTCGTGGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGTCATGGCTCTGCAGGAGGCCTGTGAGGCCTACCTCGTGGGTCTG  650

seq1  TTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCAT  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTGAGGACACCAACCTGGGCGCCATCCACGCCAAGCGTGTCACCATCAT  700

seq1  GCCC-AAGGACATCCAGCTGGCCCGCCGCATCC-GCGGGG-AGAGGGCTT  747
      |||| ||| |||||||||| ||||||||||||| |||||| |||||||||
seq2  GCCCAAAGAACATCCAGCTTGCCCGCCGCATCCGGCGGGGAAGAGGGCTT  750

seq1  AAAGTTCGT-CTTTCTGT-GTTTTTCAAAGGCT--CTTTTCAG-AGCCAC  792
      ||||||||| |||||||| ||||||||||||||   ||||||| ||||||
seq2  AAAGTTCGTCCTTTCTGTGGTTTTTCAAAGGCTTCTTTTTCAGAAGCCAC  800

seq1  CCAAACCT--ACACAAAGGTGCTGTTGACTTATAGGCCAA-TTGGAGTTT  839
      ||||||||  ||  |||||||||||||||||||||||||| |||||||||
seq2  CCAAACCTTAACCAAAAGGTGCTGTTGACTTATAGGCCAATTTGGAGTTT  850

seq1  TTTCTTGGAACGGTAGCCAGGTTCTAACAGTTTTTCTTAGCTGAGGGATG  889
      ||||||||||||||||| ||||||||||||||||||||||||||||  ||
seq2  TTTCTTGGAACGGTAGCAAGGTTCTAACAGTTTTTCTTAGCTGAGGAGTG  900

seq1  CTCTTTAGAGTGTCTTAAGTT-GGTGAGTATTCTGCAAAATCCAATATAC  938
      ||| |||||||| | |||||| ||||||||||||||||| ||  ||||||
seq2  CTC-TTAGAGTG-CCTAAGTTGGGTGAGTATTCTGCAAATTC--ATATAC  946

seq1  TTA  941
      |||
seq2  TTA  949

seq1: chr13_21981790_21982672
seq2: B6Ng01-035C01.g_66_948 (reverse)

seq1  TATCATGGGGCTATGGTTTCCGACAGACTAAAAAGGGGAATGGGAGAGAC  50
      ||||||||||||   |||||||   |||| ||||||||||||||||||||
seq2  TATCATGGGGCTTATGTTTCCG--CGACTTAAAAGGGGAATGGGAGAGAC  48

seq1  CAGATGACAGCACCCATCTCTGCTTCCTGGCACAACAAGGTGTGAGCAAG  100
      ||||||||| ||||||| | ||||| ||||  || |||||||||||||||
seq2  CAGATGACA-CACCCATTTTTGCTT-CTGGTCCACCAAGGTGTGAGCAAG  96

seq1  CACTTTGCTGCCAGGGTCAGGAGCGGGAGCTGG-TCCCATCCACTACA-T  148
      || |||||||||||||||||||||||||||||| ||||||| |||||| |
seq2  CA-TTTGCTGCCAGGGTCAGGAGCGGGAGCTGGTTCCCATCAACTACATT  145

seq1  CTCCCCAACA-CAGTGAACTGTTTGCTCTGAACTATA-TGCCAAAAACAA  196
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  CTCCCCAACACCAGTGAACTGTTTGCTCTGAACTATATTGCCAAAAACAA  195

seq1  ACTC-TTCTTCCATTAAGCTGC-TTCCTGTGAGGTATTTGATAAGAGCAA  244
      |||| ||||||||||||||||| ||||| |||||||||||||||||||||
seq2  ACTCTTTCTTCCATTAAGCTGCTTTCCTTTGAGGTATTTGATAAGAGCAA  245

seq1  GGAGAAAAGTAACTGATCTATCCATCCATTGTGATGGTATATGGACATAG  294
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAGAAAAGTAACTGATCTATCCATCCATTGTGAT-GTATATGGACATAG  294

seq1  CCCGTGAGTGTGAAATCTTCCTTCTGCAAAGCTATTGTGTTCCAGAGGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGAGTGTGAAATCTTCCTTCTGCAAAGCTATTGTGTTCCAGAGGTG  344

seq1  GGGAAATACATCCAACCAAAACTTAGCAACCTTTTACCTATGGAATCCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATACATCCAACCAAAACTTAGCAACCTTTTACCTATGGAATCCTA  394

seq1  TTGGGAATCCAATGGTGTAATACATGTTGGGAAAACCTAGAGATGTGAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATCCAATGGTGTAATACATGTTGGGAAAACCTAGAGATGTGAGT  444

seq1  AAATTACTGCACCTAACCCTCATAGATCCAAAAAGGAAGCCCTTTTGCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTGCACCTAACCCTCATAGATCCAAAAAGGAAGCCCTTTTGCAT  494

seq1  TTGGGAAGCAGCACATGGCACATTCCTTACTTAGGTGTGCCACTCTAGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGCAGCACATGGCACATTCCTTACTTAGGTGTGCCACTCTAGCC  544

seq1  ACAATCTAGTGATTTAGAAAACTGCTCATTGCAATGGTGCCCAGAAAAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTAGTGATTTAGAAAACTGCTCATTGCAATGGTGCCCAGAAAAGA  594

seq1  AGGGACTGCAACAGAACCATTACGGTATGGTATTCAAGCATTCAAATGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGCAACAGAACCATTACGGTATGGTATTCAAGCATTCAAATGTT  644

seq1  TGGTCCCCAGCTACTAGCTGCTTGGGTCTCCTGGAGGAATTACATGACTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCAGCTACTAGCTGCTTGGGTCTCCTGGAGGAATTACATGACTA  694

seq1  CATGTACAGAGATTTGTCTCCAAAGTGATTCTACATTCTGTCAAGTTGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAGAGATTTGTCTCCAAAGTGATTCTACATTCTGTCAAGTTGAC  744

seq1  AACCAAGATTTAACTATCACAATTCTACAAATCGGACAGGGGACTAATAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGATTTAACTATCACAATTCTACAAATCGGACAGGGGACTAATAT  794

seq1  CCAATATATATAAAGAACTAAAGAAGGTGGACTCCAGAAAATCAAATAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATATATAAAGAACTAAAGAAGGTGGACTCCAGAAAATCAAATAAC  844

seq1  CCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTC  883
      |||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTC  883