BAC Information

Click to search

BAC

Clone NameB6Ng01-035D14
Chromosome13 (Build37)
Map Location 88,943,976 - 89,100,337
singlet/doubletdoublet
Overlap geneEdil3
Upstream geneLOC667230, EG435375
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035D14.bB6Ng01-035D14.g
ACCDH863753DH863754
length931962
definitionDH863753|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D14, 5' end.DH863754|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,099,381 - 89,100,337)(88,943,976 - 88,944,956)
sequence
gaattctcctaatgaaatatccccttgtctgttcagcagtgagttaagga
ctactatagactttttttctactgttgaaaatgaacctaaaatgaaagac
tttcttttcccaatcattggggcttgttttaaagggaaccggtatgtcta
tgcttagatgttaatcaaccaacaatgtaatttccatttatgcacaactt
gactcctcaggcttttttccctttaattggaatgcctttaaagaacacaa
ttgatgtaaatgaaaatagatacatataaatttaagaggaagacattgga
tgattttataggtccatttacagctgtgctttgactccagcatcttatct
gccttttcttttcttttctcttaatttttccccagatctgggcttatagt
tcaaggataaaaatcacaagcttaatatgcacaagttctggatgtgcata
aataaataaatatgtgataaagaaatgaatatgttttattttgtgaaata
tactcttaatatttatttcttgaatcttttagggcagagtataaaaaatg
ggcccttcacaacttctaaaaaaattaaatgaagtccaaagcaaacatga
tgctcacatggtaaaactgccatgcaggaagaaactgttcaaaacttcta
cttcatagcatgcttcatcttataaaagaactcatcatgtttgtctccca
gatctggcctcgggatgcaaatagatgaatatccataaacatatgctaac
tattcaaatattcatacagtatcacaccttccatgatttttactggtttt
atattttccctattataatttcttttcactgtggcaaatgtctagtgtga
aaaatctcaaattatgagaaactttaaatattacaatatatcacagtctc
tgatatagttagtacagaaaaatatgtgtct
gaattcagtcagcattcctgcatagagtagggagaggctttcatgccctc
actcttaactgaaacgctgttaacagttaatggcttcccaaggatggaga
atcagtttaagaatgtggccccatgcatggggagaaaatgatacatatca
ttatgtcaacactgagggtggggtcgtgaatctttgttggttggggctag
cctgttcttcatagagatttccagaccagccagaatatgtaattagactc
tgtttcaaaacaaaagaagagtttggatgctggacactctaccgtacccc
aatagatggcctcataaacctgagtataagcagcatgattttactttatg
agtttattaaaaataaaaacgacataaatttggaagggtgaggagtttga
atggaactacaaggaggggtatagatgaatatgaggaatatgaatgacta
acattgaaaacaccatgggacttcaaattctaataattcaaacattgagt
taagaatacattttagttagtcatgaaaatggtacacttccatatggtct
agtcatttctactacaataagcttctgtcagagttgtaatataacaacta
tcttataattattttattactgacaatagaactagcagaaggccaagacc
gggggcaagggattcagcagtacaatactgggataggaacaagtttcaca
gattacaccagagattcattgtgtaggaaattctttgaaatattattttt
ttactcatgaaacagatacagtacagtttacaagccttcacatgtattta
aatgtgtttgaaactgtcaaaagttataatagatgatgcttccaaataat
aaagttatttatcatgtatcatatttttaaacatctagtgagagtaatcc
ctagtaccatcaggcaagatgactcagcaaaaaattactactacgacttg
acagttgattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89099381_89100337
seq2: B6Ng01-035D14.b_44_974 (reverse)

seq1  AGACACATTATTTTTTCTTGTTACTTAAACTATATCAGAGGACTGTTGAT  50
      ||||||||   |||||||   ||||  |||||||||||| ||||| ||||
seq2  AGACACAT--ATTTTTCT--GTACT--AACTATATCAGA-GACTG-TGAT  42

seq1  ATATTTGTTAATATTTTAAAGTATCTCCATAAATTTGAGATTTTTTTCAA  100
      |||||   ||||| |||||||| ||| ||| ||||||||||||||    |
seq2  ATATT--GTAATA-TTTAAAGTTTCT-CAT-AATTTGAGATTTTT---CA  84

seq1  CACTAGGACAATTTGCCACAGTGAAAAAGAAATTAATAAATAAGGGAAAA  150
      ||||| ||| ||||||||||||| |||||||||| ||||   ||||||||
seq2  CACTA-GAC-ATTTGCCACAGTG-AAAAGAAATT-ATAA--TAGGGAAAA  128

seq1  TATAAAAACCAGTAAAAAATCATGGAAGGTGTGATAACTGTATGAATATT  200
      ||| ||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TAT-AAAACCAGT-AAAAATCATGGAAGGTGTGAT-ACTGTATGAATATT  175

seq1  TGAATAGTTAGCATATTGTTTATGGATATTCATCTATTTGCATCCCGAGG  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAATAGTTAGCATA-TGTTTATGGATATTCATCTATTTGCATCCCGAGG  224

seq1  CCAGATCTGGGAGACAAACATGATGAGTTCTTTTATAAGATGAAGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTGGGAGACAAACATGATGAGTTCTTTTATAAGATGAAGCATGC  274

seq1  TATGAAGTAGAAGTTTTGAACAGTTTCTTCCTGCATGGCAGTTTTACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTAGAAGTTTTGAACAGTTTCTTCCTGCATGGCAGTTTTACCAT  324

seq1  GTGAGCATCATGTTTGCTTTGGACTTCATTTAATTTTTTTAGAAGTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATCATGTTTGCTTTGGACTTCATTTAATTTTTTTAGAAGTTGTG  374

seq1  AAGGGCCCATTTTTTATACTCTGCCCTAAAAGATTCAAGAAATAAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCCATTTTTTATACTCTGCCCTAAAAGATTCAAGAAATAAATATT  424

seq1  AAGAGTATATTTCACAAAATAAAACATATTCATTTCTTTATCACATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATATTTCACAAAATAAAACATATTCATTTCTTTATCACATATTT  474

seq1  ATTTATTTATGCACATCCAGAACTTGTGCATATTAAGCTTGTGATTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATGCACATCCAGAACTTGTGCATATTAAGCTTGTGATTTTTA  524

seq1  TCCTTGAACTATAAGCCCAGATCTGGGGAAAAATTAAGAGAAAAGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAACTATAAGCCCAGATCTGGGGAAAAATTAAGAGAAAAGAAAAG  574

seq1  AAAAGGCAGATAAGATGCTGGAGTCAAAGCACAGCTGTAAATGGACCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGATAAGATGCTGGAGTCAAAGCACAGCTGTAAATGGACCTAT  624

seq1  AAAATCATCCAATGTCTTCCTCTTAAATTTATATGTATCTATTTTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATCCAATGTCTTCCTCTTAAATTTATATGTATCTATTTTCATTT  674

seq1  ACATCAATTGTGTTCTTTAAAGGCATTCCAATTAAAGGGAAAAAAGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAATTGTGTTCTTTAAAGGCATTCCAATTAAAGGGAAAAAAGCCTG  724

seq1  AGGAGTCAAGTTGTGCATAAATGGAAATTACATTGTTGGTTGATTAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCAAGTTGTGCATAAATGGAAATTACATTGTTGGTTGATTAACAT  774

seq1  CTAAGCATAGACATACCGGTTCCCTTTAAAACAAGCCCCAATGATTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCATAGACATACCGGTTCCCTTTAAAACAAGCCCCAATGATTGGGA  824

seq1  AAAGAAAGTCTTTCATTTTAGGTTCATTTTCAACAGTAGAAAAAAAGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTCTTTCATTTTAGGTTCATTTTCAACAGTAGAAAAAAAGTCT  874

seq1  ATAGTAGTCCTTAACTCACTGCTGAACAGACAAGGGGATATTTCATTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGTCCTTAACTCACTGCTGAACAGACAAGGGGATATTTCATTAGG  924

seq1  AGAATTC  957
      |||||||
seq2  AGAATTC  931

seq1: chr13_88943976_88944956
seq2: B6Ng01-035D14.g_66_1027

seq1  GAATTCAGTCAGCATTCCTGCATAGAGTAGGGAGAGGCTTTCATGCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGCATTCCTGCATAGAGTAGGGAGAGGCTTTCATGCCCTC  50

seq1  ACTCTTAACTGAAACGCTGTTAACAGTTAATGGCTTCCCAAGGATGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAACTGAAACGCTGTTAACAGTTAATGGCTTCCCAAGGATGGAGA  100

seq1  ATCAGTTTAAGAATGTGGCCCCATGCATGGGGAGAAAATGATACATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTAAGAATGTGGCCCCATGCATGGGGAGAAAATGATACATATCA  150

seq1  TTATGTCAACACTGAGGGTGGGGTCGTGAATCTTTGTTGGTTGGGGCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAACACTGAGGGTGGGGTCGTGAATCTTTGTTGGTTGGGGCTAG  200

seq1  CCTGTTCTTCATAGAGATTTCCAGACCAGCCAGAATATGTAATTAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTCATAGAGATTTCCAGACCAGCCAGAATATGTAATTAGACTC  250

seq1  TGTTTCAAAACAAAAGAAGAGTTTGGATGCTGGACACTCTACCGTACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAAACAAAAGAAGAGTTTGGATGCTGGACACTCTACCGTACCCC  300

seq1  AATAGATGGCCTCATAAACCTGAGTATAAGCAGCATGATTTTACTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGGCCTCATAAACCTGAGTATAAGCAGCATGATTTTACTTTATG  350

seq1  AGTTTATTAAAAATAAAAACGACATAAATTTGGAAGGGTGAGGAGTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTAAAAATAAAAACGACATAAATTTGGAAGGGTGAGGAGTTTGA  400

seq1  ATGGAACTACAAGGAGGGGTATAGATGAATATGAGGAATATGAATGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTACAAGGAGGGGTATAGATGAATATGAGGAATATGAATGACTA  450

seq1  ACATTGAAAACACCATGGGACTTCAAATTCTAATAATTCAAACATTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAAACACCATGGGACTTCAAATTCTAATAATTCAAACATTGAGT  500

seq1  TAAGAATACATTTTAGTTAGTCATGAAAATGGTACACTTCCATATGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATACATTTTAGTTAGTCATGAAAATGGTACACTTCCATATGGTCT  550

seq1  AGTCATTTCTACTACAATAAGCTTCTGTCAGAGTTGTAATATAACAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTCTACTACAATAAGCTTCTGTCAGAGTTGTAATATAACAACTA  600

seq1  TCTTATAATTATTTTATTACTGACAATAGAACTAGCAGAAGGCCAAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAATTATTTTATTACTGACAATAGAACTAGCAGAAGGCCAAGACC  650

seq1  -GGGGCAAGGGATTCAGCAGGTACCATACTGGAATAGGAACAAGTTTCAC  699
       |||||||||||||||||| |||| ||||||| |||||||||||||||||
seq2  GGGGGCAAGGGATTCAGCA-GTACAATACTGGGATAGGAACAAGTTTCAC  699

seq1  AGATTACACCAGAGATTCATTGTGTAGGAAATTCTTTGAAATATTA-TTT  748
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGATTACACCAGAGATTCATTGTGTAGGAAATTCTTTGAAATATTATTTT  749

seq1  TTTACTCATGAAACAGATACAGTACAGTTTACAAGCCTTCACATGTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTACTCATGAAACAGATACAGTACAGTTTACAAGCCTTCACATGTA-TT  798

seq1  TAATTGTGTTTGAAACTGTCAAAAGTTATAATAGATGATGCTTCCAAAAT  848
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAATGTGTTTGAAACTGTCAAAAGTTATAATAGATGATGCTTCC-AAAT  847

seq1  AATAAAGTTATTTATCCATGTATCATATTTTTAAACAATTCTTAAGTGAA  898
      ||||||||||||||| |||||||||||||||||||||  |||  ||||| 
seq2  AATAAAGTTATTTAT-CATGTATCATATTTTTAAACA--TCT--AGTGA-  891

seq1  GAAGTAATCACCAAGTACACACCAGGGCAAAGATGACTCAGCAAAAAAAT  948
        ||||||| || ||||| || ||||   ||||||||||||||||||| |
seq2  -GAGTAATC-CCTAGTAC-CATCAGG--CAAGATGACTCAGCAAAAAATT  936

seq1  ATACCTACTACCGACCTTGACCAGTTGAATTGA  981
      |   |||||| ||| ||||| |||||| |||||
seq2  A---CTACTA-CGA-CTTGA-CAGTTG-ATTGA  962