BAC Information

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BAC

Clone NameB6Ng01-035G23
Chromosome13 (Build37)
Map Location 62,094,153 - 62,095,252
singlet/doubletsinglet
Overlap geneEG633250
Upstream geneCtsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382
Downstream geneEG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035G23.bB6Ng01-035G23.g
ACCDH863897DH863898
length1,0221,091
definitionDH863897|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G23, 5' end.DH863898|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaattgggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagcctttgctgtt
ctgttcaggaattttccccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagacttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctccctttgtcgaagatcaag
tgaccatagggtgtgtggggttcatttctgggtcttcaaattctattcca
ttggtctactttgtctgtctctataccagtaccatgcagtttttatcaca
attgctctgtagtaaagctttaggtcaggcaggggaattccaccagaggg
ttcttttattctttgagaaaacttttgcctatcctaggtttttttggtat
tcaaatgaatttgcaaattgcttccttctattcttgaagaattgagttgg
aattttgatggggattgcttgaatttgagattgctttggccaaaaagcca
ttttccaatgttgatcctgccaatcctgaactgggaaatctttcccttct
ctgagaatttcttaatttctttcttcgaaaattgaagttttatcatacag
attttacttccttagagtcacgccagaaatttaatattattgtgactatt
agaaggtgttgtttccctaatttcttttctcaccctgttattctttgtgt
agaaaaggcccttgcttttctt
gaattcatacagaaatgaacccccttggaattattcaatttgttgaagcc
tttgctcaacatcgtctccagcttcgtaaaagagtacaaactggaaagaa
actctatgaatggaagcaatgtggtaaagcctttgaagatcacagtcatc
ttaaaagctatgaaggaattcatatgggagagaaaccttatgaatgccat
cagtgtgaaaaagccttttcaagtcacagtaatctcctacaacctaaagg
aacacatactggagagaaatgctatgaatgtgatctgtgtggtaaagcct
tttcacaacatagtcggcttaaaaggcatggaagaattcatactggagag
aaaccctacagatgtaataactgtgagaaagccttttcacaacatattca
cctccagtcacatagaagaattcctactggagagaaaccctacaaatata
ataaatgtgagaaagcctttttacaacactataacctccaaagacataaa
agaatacatattgcatagaaaccccaatgaatgtggtctatgtgtgaaag
ccctgtgtatgtcacaggtatcttcaaaaagcataaaaaaaattcatact
gtaaaagaaagctttatgaacatttataatatgggaaaatctacaaatat
ccgtagtcttaatcatcatgaacatatttgtattggcagaaatccttttg
aattttaactgtgtggtaaaacctatttcaacaccacttatctcctaatg
catcaaggagcacatactggggaggacagtggtgtgggggaattatgaat
gtacacatgtggtaaaaatccatgctgcagggagccccacaattgagtca
ttctgaaaaattttgcattcacagttggtttctgtagaggaaagtcatta
gctatactaatctgtaacgttgcatgtccagtattttcacttctaagtct
ccagtaggcagtctattactctgatgccttggtatgatcttagccatcac
ttacataggtacacagaatattattctggaaaatcttgcgagggcacatc
ggcgaatgaaatgctatatttaacatagatgtgtctatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62094153_62095252
seq2: B6Ng01-035G23.g_65_1155

seq1  GAATTCATACAGAAAAGAACACCCATGGAATTATTCAATTTGTTGAAGCC  50
      ||||||||||||||| |||| ||| |||||||||||||||||||||||||
seq2  GAATTCATACAGAAATGAACCCCCTTGGAATTATTCAATTTGTTGAAGCC  50

seq1  TTTGCTCAACATCGTCTCCAAATTCGTAAAAGAGCACAAACTGGAAAGAA  100
      ||||||||||||||||||||  |||||||||||| |||||||||||||||
seq2  TTTGCTCAACATCGTCTCCAGCTTCGTAAAAGAGTACAAACTGGAAAGAA  100

seq1  ACTCTATGAATGGAAGCAATGTGGTAAAGCCTTTGAAGATCACAGTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGAATGGAAGCAATGTGGTAAAGCCTTTGAAGATCACAGTCATC  150

seq1  TTAAAAGCTATGAAGGAATTCATACGGGAGAGAAACCTTACAAATGTCAT  200
      |||||||||||||||||||||||| |||||||||||||||  |||| |||
seq2  TTAAAAGCTATGAAGGAATTCATATGGGAGAGAAACCTTATGAATGCCAT  200

seq1  CAGTGTGAAAAAGCCTTTTCAAGTCACAGTAATCTCCTACAACCTAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGAAAAAGCCTTTTCAAGTCACAGTAATCTCCTACAACCTAAAGG  250

seq1  AACACATACTGGAGAGAAATGCTATGAATGTGATCTGTGTGGTAAAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATACTGGAGAGAAATGCTATGAATGTGATCTGTGTGGTAAAGCCT  300

seq1  TTTTACAACATAGTCGGCTTAAAAGGCATGGAAGAATTCATACTGGAGAG  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAACATAGTCGGCTTAAAAGGCATGGAAGAATTCATACTGGAGAG  350

seq1  AAACCCTACAGATGTAATAACTGTGAGACAGCCTTTTCACAACATATTCA  400
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAACCCTACAGATGTAATAACTGTGAGAAAGCCTTTTCACAACATATTCA  400

seq1  CCTCCAGTCACATAGAAGAATTCATACTGGAGAGAAACCCTGCAAATGTA  450
      ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
seq2  CCTCCAGTCACATAGAAGAATTCCTACTGGAGAGAAACCCTACAAATATA  450

seq1  ATAAATGTGAGAAAGCCTTTTTACAACACTATAACCTCCAAAGACATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTGAGAAAGCCTTTTTACAACACTATAACCTCCAAAGACATAAA  500

seq1  AGAATACATATTGGATAGAAA-CACAATGAATGTGATCTATGTGTGAAAG  549
      ||||||||||||| ||||||| | ||||||||||| ||||||||||||||
seq2  AGAATACATATTGCATAGAAACCCCAATGAATGTGGTCTATGTGTGAAAG  550

seq1  -CCTGTGTATGTCACAGGTATCTTC-AAAAGCAT-AAAAAAATTCATACT  596
       |||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  CCCTGTGTATGTCACAGGTATCTTCAAAAAGCATAAAAAAAATTCATACT  600

seq1  GT-AGAGAAAGC-TTATGAATATATATAATATGGTAAAATCTACAAATAT  644
      || | ||||||| ||||||| || |||||||||| |||||||||||||||
seq2  GTAAAAGAAAGCTTTATGAACATTTATAATATGGGAAAATCTACAAATAT  650

seq1  CCATAGTCTTAATCATCATGAACATATTTGTATTGGCAAGAAATCC-TCT  693
      || |||||||||||||||||||||||||||||||||| |||||||| | |
seq2  CCGTAGTCTTAATCATCATGAACATATTTGTATTGGC-AGAAATCCTTTT  699

seq1  GAATATTAACTGTGTGATAAAACCTATTTCAACA-CACTTATCTCCTAAT  742
      |||| ||||||||||| ||||||||||||||||| |||||||||||||||
seq2  GAATTTTAACTGTGTGGTAAAACCTATTTCAACACCACTTATCTCCTAAT  749

seq1  GCATCAAGGAGCACATACTGGGGA-GACAGAGGTATGAGGAACTTATGAA  791
      |||||||||||||||||||||||| ||||| ||| || || | |||||||
seq2  GCATCAAGGAGCACATACTGGGGAGGACAGTGGTGTGGGGGAATTATGAA  799

seq1  TGTACACAATGTGGTAAAAATCCATGCTGCAGGGAAGCCCTACAAAT--G  839
      ||||||| |||||||||||||||||||||||||| ||||| |||| |  |
seq2  TGTACAC-ATGTGGTAAAAATCCATGCTGCAGGG-AGCCCCACAATTGAG  847

seq1  TCATTCTGATAAAATTTTGCACTTCCCAGTATGTTTTTGTAAGAGGAAAG  889
      ||||||||| ||||||||||| ||| ||||  |||| ||| |||||||||
seq2  TCATTCTGA-AAAATTTTGCA-TTCACAGTTGGTTTCTGT-AGAGGAAAG  894

seq1  TCATTAGCTTATACTAAATCTGTTAACGTTTGCATGTCAAAGTAATTTTT  939
      |||||||| |||||| |||||| ||||| |||||||||  ||||  ||||
seq2  TCATTAGC-TATACT-AATCTG-TAACG-TTGCATGTC-CAGTA--TTTT  937

seq1  CAACTTCTAAGAACTCATAAGTAGGGCAGTCTATGACTCTGATGGCCTTG  989
      | |||||||||   ||   |||| |||||||||| |||||||| ||||||
seq2  C-ACTTCTAAG---TCTCCAGTA-GGCAGTCTATTACTCTGAT-GCCTTG  981

seq1  GTATGATCTTTAGCCAATCCACTTACATTAAGTTACACAAAATTATTTAT  1039
      |||||||| |||||||   |||||||||  || |||||| |||   ||||
seq2  GTATGATC-TTAGCCA--TCACTTACAT--AGGTACACAGAAT--ATTAT  1024

seq1  TCCTGAGAAAAACTCTAGCAAGTG----TC----AACTATCTGCTCAAAT  1081
      | ||| |||||  ||| || || |    ||    ||  |  |||| | ||
seq2  T-CTG-GAAAA--TCTTGCGAGGGCACATCGGCGAATGAAATGCT-ATAT  1069

seq1  ATGA---TGATGTGTCTATTTT  1100
       | |    ||||||||||||||
seq2  TTAACATAGATGTGTCTATTTT  1091