BAC Information

Click to search

BAC

Clone NameB6Ng01-035N02
Chromosome13 (Build37)5 (Build37)
Map Location 87,262,392 - 87,263,36218,084,511 - 18,084,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035N02.bB6Ng01-035N02.g
ACCDH864183DH864184
length964810
definitionDH864183|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N02, 5' end.DH864184|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,262,392 - 87,263,362)(18,084,511 - 18,084,575)
sequence
gaattcttctctattaccctggtacagcctgaagaaacacactttcaact
tcctggaattcagcagttcccactttttgaggcccccatacgcagctgta
aatattctttagatttgctaagagtaaagcatctaaaagaacatgctgac
tcttaaatagcagcctcaaatacctgtgataagtaggcaaaacatttttt
tcttatatttattagcgtataatactttgctagttgtcatctggactttt
ctgtcatacagacaaacaaaccaaatcatggccctaaagttaaggaaaaa
aaaattcaacttaagtatttgttcttgccctttctctattccatacatgt
tttccgtaatccctcctactcttaaagcaagacaaattctcattaaagtc
caaaaatactttcccaggggaaaaaaaagactttacagtttaatctttgt
tatttaataagcttctttgttaattttgagtcatgaataccacttatagc
aggggcaaaacagctggtgattttttttttctgctgttgtaatgggttct
ttggatctgcctgcccctgctgtaatcatatagaactttgggtgaatact
aattaacagattgatgaatacatcaaaagatgttaaacctggggttactg
ggaggcagtgtttactcccatatgggttcattttctcctgaaatgaaatt
ataaaatgtaaaacaaatctagctaaaattgcagtttctatgttattttt
ctacttcagtgtgataaattcaatttttaaaaggtataacaaattcattg
gtataatttggtattttaaaaggtcaatcctatagctttagatattcttc
atagtatcaaataaagaatgaatattattgctggtgtttagcaatttaga
actttagtagaataaaaaccagcagtaggattgcattcaaattgtactgc
ataggataaaactt
gaattctcacccgaggaatattgaaaggctgagaagcacctgagaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaacagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtagtaccagaggatcccgcaatacttctcctgggc
atatatccagaagatgtcccaaccggtaaaaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctaaacagatgaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaatttctaggcaa
atgtttgcacctagagggcatcctcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattagcccagaaac
ttagtatagcgaaatataaggtacaataggcaaaacacatgaaactgaag
aagaacgaagaccaagtgtagacacttttgctcctttcttagaattggaa
acaatcaccccatggaaggagttacagagacaaagtttggagctgagcca
aaggatggaagatgtagagactgcatatccagggatccatccataattag
cctcaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87262392_87263362
seq2: B6Ng01-035N02.b_43_1006

seq1  GAATTCTTCTCTATTACCCTGGTACAGCCTGAAGAAACACACTTTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTATTACCCTGGTACAGCCTGAAGAAACACACTTTCAACT  50

seq1  TCCTGGAATTCAGCAGTTCCCACTTTTTGAGGCCCCCATACGCAGCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATTCAGCAGTTCCCACTTTTTGAGGCCCCCATACGCAGCTGTA  100

seq1  AATATTCTTTAGATTTGCTAAGAGTAAAGCATCTAAAAGAACATGCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTTTAGATTTGCTAAGAGTAAAGCATCTAAAAGAACATGCTGAC  150

seq1  TCTTAAATAGCAGCCTCAAATACCTGTGATAAGTAGGCAAAACATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATAGCAGCCTCAAATACCTGTGATAAGTAGGCAAAACATTTTTT  200

seq1  TCTTATATTTATTAGCGTATAATACTTTGCTAGTTGTCATCTGGACTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATTTATTAGCGTATAATACTTTGCTAGTTGTCATCTGGACTTTT  250

seq1  CTGTCATACAGACAAACAAACCAAATCATGGCCCTAAAGTTAAGGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATACAGACAAACAAACCAAATCATGGCCCTAAAGTTAAGGAAAAA  300

seq1  AAAATTCAACTTAAGTATTTGTTCTTGCCCTTTCTCTATTCCATACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAACTTAAGTATTTGTTCTTGCCCTTTCTCTATTCCATACATGT  350

seq1  TTTCCGTAATCCCTCCTACTCTTAAAGCAAGACAAATTCTCATTAAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTAATCCCTCCTACTCTTAAAGCAAGACAAATTCTCATTAAAGTC  400

seq1  CAAAAATACTTTCCCAGGGGAAAAAAAAGACTTTACAGTTTAATCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACTTTCCCAGGGGAAAAAAAAGACTTTACAGTTTAATCTTTGT  450

seq1  TATTTAATAAGCTTCTTTGTTAATTTTGAGTCATGAATACCACTTATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATAAGCTTCTTTGTTAATTTTGAGTCATGAATACCACTTATAGC  500

seq1  AGGGGCAAAACAGCTGGTGATTTTTTTTTTCTGCTGTTGTAATGGGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAAAACAGCTGGTGATTTTTTTTTTCTGCTGTTGTAATGGGTTCT  550

seq1  TTGGATCTGCCTGCCCCTGCTGTAATCATATAGAACTTTGGGTGAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTGCCTGCCCCTGCTGTAATCATATAGAACTTTGGGTGAATACT  600

seq1  AATTAACAGATTGATGAATACATCAAAAGATGTTAAACCTGGGGTTACT-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTAACAGATTGATGAATACATCAAAAGATGTTAAACCTGGGGTTACTG  650

seq1  GGAGGCAGTGTTTACTCCCATATGGGTTCATTTTCTCCTGAAATGAAA-T  698
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAGGCAGTGTTTACTCCCATATGGGTTCATTTTCTCCTGAAATGAAATT  700

seq1  ATAAAATGTAAAACAAATCTAGCTAAAATTGCAG-TTCTATGTTATTTTT  747
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAAAATGTAAAACAAATCTAGCTAAAATTGCAGTTTCTATGTTATTTTT  750

seq1  CTACTTCAGTGTGATAAATTCAATTTTTAAAAGGTTATAACAAATTCATT  797
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTACTTCAGTGTGATAAATTCAATTTTTAAAAGG-TATAACAAATTCATT  799

seq1  GGTATAATTTGGTATTTTAAAAGGTCAATACTATAGCTTTAGATATTCTT  847
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTATAATTTGGTATTTTAAAAGGTCAATCCTATAGCTTTAGATATTCTT  849

seq1  CATAGTATCAAATAAAAGATGAATATTTATTGCTGGTGTTTAGCAATTTA  897
      ||||||||||||||||  ||||||| ||||||||||||||||||||||||
seq2  CATAGTATCAAATAAAGAATGAATA-TTATTGCTGGTGTTTAGCAATTTA  898

seq1  GAACTTTTAAGTAGAAATAAAAACACAGCAGTAAGAATTGCATTCAAAAT  947
      |||||||  ||||| ||||||||| ||||||| || ||||||||| ||||
seq2  GAACTTT--AGTAG-AATAAAAAC-CAGCAGT-AGGATTGCATTC-AAAT  942

seq1  TGTACATGCATAGTATTAAAACTT  971
      ||||| ||||||| | ||||||||
seq2  TGTAC-TGCATAGGA-TAAAACTT  964

seq1: chr5_18084511_18084575
seq2: B6Ng01-035N02.g_386_450 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      ||| ||||| |||||
seq2  CTTTTTACCGGTTGG  65