BAC Information

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BAC

Clone NameB6Ng01-036B02
Chromosome13 (Build37)
Map Location 23,502,497 - 23,648,195
singlet/doubletdoublet
Overlap geneAbt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d
Upstream geneV1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
Downstream geneHist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036B02.bB6Ng01-036B02.g
ACCDH864363DH864364
length1,0331,007
definitionDH864363|Mus musculus domesticus DNA, BAC clone: B6Ng01-036B02, 5' end.DH864364|Mus musculus domesticus DNA, BAC clone: B6Ng01-036B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,502,497 - 23,503,550)(23,647,215 - 23,648,195)
sequence
gaattccataaaatcattaattcatgtaagcagtgttctctcaaaaacgt
tcatcttcatgttgaccttcaagaaacttgcccaacagtgtgggctgtct
tggccagaaagtaatcacaccagactataggcagcagggatcttcccgtg
cccattcacaccacgccagaaatatgaggaacatagcaatgacaaatatg
agaaggcaggaagcaagaagcagtactgggatgaagccgctgaggtcgtg
cctctccatctcatcctccaacacagctgagcaaaagtgggggccgtctc
taggaagctcacttgcccactgcagctcttcctgcctggcgtccaacacg
aaaatacataattacatctgccctttccagatgcaacagcggctcaggta
gattgagtgtttttctcagggtctcagagctgggaagtgtcaaggcctga
actgggaagcagaggttgagtatcaaatactgagctcttcctctgcccca
actcccctgtctctgcctggtctgcacagtaactcactcgttaacactcc
agatacccaatctcccaacctccacagccttgatttagactgggctcctg
gtaatggtttcctgtcccagagctgggttctatcccctggaactctgcca
gggtgatttcagacccaagttggcattttaggcccaggctgtaggaggaa
attcttctgcagagaagagcaactgagtatgttcttgccgttacagcttc
atggaggcaagtgagcaaattggtttgtttcagctcttagacccagagac
agcaggcacctttgcacttgactaggctcctgtggttccagcacttcagc
aagcagatagcccgcaatgagctccgtgcccgcactgctgtatcttactt
tgtatagtggaaaatcttcaccttgagacagtgagtcatctgccgagact
atctctgacctgactgggattctaccctctcgcatgcgctagctccagtc
ccaccccagctcacattcatcattattctcacc
gaattccagagctctgaagtgaacaaaggggcggggacagagaaaaaacg
ccagcgtcccagtacgtaaatgtaaatcttaatatcacaatctctgattg
gtgcaacacccatgactgaaagtacggcttgattggttaattctcaaaac
caccttgtgtagccggattggaaaacttaaaacagaggctccagcctgta
gccactattgtgagagtagcttcctagagaacccccctaatgccttatca
cgcctaggcgacattagaaaggacttcccgccaaactcttggaatatgaa
cacgtgtgtggagcacacacagaagcaaaaaactgccggccagaagtcca
gctagagctgaaaatgatacaatctatcgctcaactagagtttatagatg
ctcctaaatgtacccataacaaagtgcacagaattgatctgcttcggaac
acatagccagagtcagcggacataccatgagaaaaccagaaaaggctcag
ctcttttgaatgagggttgtggggtggctctgaaaaagagccgttttgag
aatttcaaagcaggacgccacccctcctacttctttgcaagggggaaccc
tttctttgccttgggtgggcccttcgggttaaaaagcttttaggcttgga
aacccttaaccttggggaacccttgggcttgggctggactctttgcctgc
ctttcttgggcttagcaaccttcaccttcttgggaaccctgggaaacctt
cctgggccccggcagccagcccaaggcttcttcgccttccttggaagctt
ccttggccctcttttttgggtgtggcaaccccgaacgaccttcttaagct
tttttgctgctacccaaggcttttgacccttgccccgccctgcctcttaa
cctttgtgctcaccctccacggaggcccgccttctgtgtaatttgaaagg
acccgaagaccccgggccctttgttcctcaccagggtaccctttctcacc
aggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23502497_23503550
seq2: B6Ng01-036B02.b_46_1078

seq1  GAATTCCATAAAATCATTAATTCATGTAAGCAGTGTTCTCTCAAAAACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAATCATTAATTCATGTAAGCAGTGTTCTCTCAAAAACGT  50

seq1  TCATCTTCATGTTGACCTTCAAGAAACTTGCCCAACAGTGTGGGCTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCATGTTGACCTTCAAGAAACTTGCCCAACAGTGTGGGCTGTCT  100

seq1  TGGCCAGAAAGTAATCACACCAGACTATAGGCAGCAGGGATCTTCCCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGAAAGTAATCACACCAGACTATAGGCAGCAGGGATCTTCCCGTG  150

seq1  CCCATTCACACCACGCCAGAAATATGAGGAACATAGCAATGACAAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCACACCACGCCAGAAATATGAGGAACATAGCAATGACAAATATG  200

seq1  AGAAGGCAGGAAGCAAGAAGCAGTACTGGGATGAAGCCGCTGAGGTCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAGGAAGCAAGAAGCAGTACTGGGATGAAGCCGCTGAGGTCGTG  250

seq1  CCTCTCCATCTCATCCTCCAACACAGCTGAGCAAAAGTGGGGGCCGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCATCTCATCCTCCAACACAGCTGAGCAAAAGTGGGGGCCGTCTC  300

seq1  TAGGAAGCTCACTTGCCCACTGCAGCTCTTCCTGCCTGGCGTCCAACACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGCTCACTTGCCCACTGCAGCTCTTCCTGCCTGGCGTCCAACACG  350

seq1  AAAATACATAATTACATCTGCCCTTTCCAGATGCAACAGCGGCTCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATAATTACATCTGCCCTTTCCAGATGCAACAGCGGCTCAGGTA  400

seq1  GATTGAGTGTTTTTCTCAGGGTCTCAGAGCTGGGAAGTGTCAAGGCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGTGTTTTTCTCAGGGTCTCAGAGCTGGGAAGTGTCAAGGCCTGA  450

seq1  ACTGGGAAGCAGAGGTTGAGTATCAAATACTGAGCTCTTCCTCTGCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGCAGAGGTTGAGTATCAAATACTGAGCTCTTCCTCTGCCCCA  500

seq1  ACTCCCCTGTCTCTGCCTGGTCTGCACAGTAACTCACTCGTTAACACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCTGTCTCTGCCTGGTCTGCACAGTAACTCACTCGTTAACACTCC  550

seq1  AGATACCCAATCTCCCAACCTCCACAGCCTTGATTTAGACTGGGCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCCAATCTCCCAACCTCCACAGCCTTGATTTAGACTGGGCTCCTG  600

seq1  GTAATGGTTTCCTGTCCCAGAGCTGGGTTCTATCCCCTGGAACTCTGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGTTTCCTGTCCCAGAGCTGGGTTCTATCCCCTGGAACTCTGCCA  650

seq1  GGGTGATTTCAGA-CCAAGTTGGCA-TTTAGGCCCAGGCTGTAGGAGGAA  698
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GGGTGATTTCAGACCCAAGTTGGCATTTTAGGCCCAGGCTGTAGGAGGAA  700

seq1  ATTCTCCTGCAGAGAAAGAGCAACTGAGTATGTTCTTGCCGTTACAGCTT  748
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTGCAGAG-AAGAGCAACTGAGTATGTTCTTGCCGTTACAGCTT  749

seq1  C-TGGAGGCAAGTGAGCAAATTGGTT--GTTCAGCTC-TAGACCCAGAGA  794
      | ||||||||||||||||||||||||   |||||||| ||||||||||||
seq2  CATGGAGGCAAGTGAGCAAATTGGTTTGTTTCAGCTCTTAGACCCAGAGA  799

seq1  CAGCAGGC-CCCTTGC-CCTGACTAGGCTTCGTGT-GTTCCAGCACTTCA  841
      |||||||| || |||| | ||||||||| || ||| ||||||||||||||
seq2  CAGCAGGCACCTTTGCACTTGACTAGGC-TCCTGTGGTTCCAGCACTTCA  848

seq1  GCAGGCAGAGAAGCCCGCAAATGAGCCGCGTGCCCCGACACTGCTGTTTT  891
      ||| |||||  ||||||| |||||||  |||||||   |||||||| | |
seq2  GCAAGCAGA-TAGCCCGC-AATGAGCTCCGTGCCC--GCACTGCTG-TAT  893

seq1  CTTAC-TTGTATAGGTTGGAAGAGTCTTCACCTTGAGGAACCAAGTGAGG  940
      ||||| ||||||||  ||||| | |||||||||||||  ||  ||||| |
seq2  CTTACTTTGTATAG--TGGAA-AATCTTCACCTTGAG--AC--AGTGA-G  935

seq1  TCAATCTGCCGAGACTATCTCTGAACCTGAACTGGGATTCTACCCCCTAC  990
      || |||||||||||||||||||| ||||| |||||||||||||||     
seq2  TC-ATCTGCCGAGACTATCTCTG-ACCTG-ACTGGGATTCTACCC----T  978

seq1  CTCGCAATGCCGCTTACCCCCAGCCCCCACCCCCAGCTCCAACATTCATT  1040
      ||||| ||| ||| || | |||| |||   |||||||||  ||||||| |
seq2  CTCGC-ATG-CGC-TAGCTCCAGTCCC--ACCCCAGCTC--ACATTCA-T  1020

seq1  CATTTATTCTCACC  1054
      || |||||||||||
seq2  CA-TTATTCTCACC  1033

seq1: chr13_23647215_23648195
seq2: B6Ng01-036B02.g_67_1073 (reverse)

seq1  AGAGCCTGGTGAGCAAGGGTACCCTGGTGCAGACCAAGGGCACCGGCGCC  50
      ||||||||||||| |||||||||||||||  || ||| ||  |||| | |
seq2  AGAGCCTGGTGAGAAAGGGTACCCTGGTGAGGAACAAAGGGCCCGGGGTC  50

seq1  TCCGGCTCC-TTCAAACTCAACAAGAAGGC-GGCTTCCGGTGAGGCTAAG  98
      | ||| ||| |||||| |  || ||||||| ||| ||||  |||| | ||
seq2  TTCGGGTCCTTTCAAATTACAC-AGAAGGCGGGCCTCCGTGGAGGGTGAG  99

seq1  C-CCAAGGCTAAGAAGGCA-GGCGCGGCCAAGGCCAAGAAGCCTGCGGGA  146
      | | |||| |||| ||||| |||| ||| | || ||| ||||||  || |
seq2  CACAAAGGTTAAG-AGGCAGGGCGGGGCAAGGGTCAA-AAGCCTTGGGTA  147

seq1  GCAGCCAAGAAGCCTAAGAAGG-CGACTGGTGCTGCCACACCC-AAAAAG  194
      ||||| || |||| |||||||| ||   || | |||||||||| ||||||
seq2  GCAGCAAAAAAGCTTAAGAAGGTCGTTCGGGGTTGCCACACCCAAAAAAG  197

seq1  ACGGCCAA-GAAGACTCCGAAGAAGGCGAAGAAGCCTGCGGC-GGCTGCC  242
      | |||||| ||||  ||| | ||||||||||||||||  ||| |||||||
seq2  AGGGCCAAGGAAGCTTCCAAGGAAGGCGAAGAAGCCTTGGGCTGGCTGCC  247

seq1  GGCG-CCAAGAAAGTTTCCAAGAG-TCCCAAGAAGGTGAAGGCTGCTAAG  290
      || | ||| ||| |||||| || | ||||||||||||||||| |||||||
seq2  GGGGCCCAGGAAGGTTTCCCAGGGTTCCCAAGAAGGTGAAGGTTGCTAAG  297

seq1  CCCAAG-AAGGCA-GCAAAGAGTCCAG-CCAAGGCCAAGGCT--CCCAAG  335
      |||||| |||||| ||||||||||||| ||||| |||||| |  ||||||
seq2  CCCAAGAAAGGCAGGCAAAGAGTCCAGCCCAAGCCCAAGGGTTCCCCAAG  347

seq1  GCTAA-GGCTTCCAAGCCT-AAAGC-TTCTAAGCCGAAGG--CCA-CCAA  379
      | ||| || |||||||||| ||||| || ||| |||||||  ||| ||||
seq2  GTTAAGGGTTTCCAAGCCTAAAAGCTTTTTAACCCGAAGGGCCCACCCAA  397

seq1  GGCAAAGAA--GGCTGCCCCTCGC-AAGAAGTA-GAGTGGT-GCGTCCTG  424
      |||||||||  || | ||||| || |||||||| ||| ||| ||||||||
seq2  GGCAAAGAAAGGGTTCCCCCTTGCAAAGAAGTAGGAGGGGTGGCGTCCTG  447

seq1  CTTTGAAAATCTC-AAACGGCTC-TTTTCAGAGCCA-CCCACAA-CCTCA  470
      |||||||| |||| ||||||||| |||||||||||| ||||||| |||||
seq2  CTTTGAAATTCTCAAAACGGCTCTTTTTCAGAGCCACCCCACAACCCTCA  497

seq1  TTCAAAAGAGCTGAGCCTTTTTCTGGTTTTCTCATGGTATGTCCGCTGAC  520
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCAAAAGAGCTGAGCC-TTTTCTGGTTTTCTCATGGTATGTCCGCTGAC  546

seq1  TCTGGCTATGTGTTCCGAAGCAGATCAATTCTGTGCACTTTGTTATGGGT  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTATGTGTTCCGAAGCAGATCAATTCTGTGCACTTTGTTATGGGT  596

seq1  ACATTTAGGAGCATCTATAAACTCTAGTTGAGCGATAGATTGTATCATTT  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGGAGCATCTATAAACTCTAGTTGAGCGATAGATTGTATCATTT  646

seq1  TCAGCTCTAGCTGGACTTCTGGCCGGCAGTTTTTTGCTTCTGTGTGTGCT  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTAGCTGGACTTCTGGCCGGCAGTTTTTTGCTTCTGTGTGTGCT  696

seq1  CCACACACGTGTTCATATTCCAAGAGTTTGGCGGGAAGTCCTTTCTAATG  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACGTGTTCATATTCCAAGAGTTTGGCGGGAAGTCCTTTCTAATG  746

seq1  TCGCCTAGGCGTGATAAGGCATTAGGGGGGTTCTCTAGGAAGCTACTCTC  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTAGGCGTGATAAGGCATTAGGGGGGTTCTCTAGGAAGCTACTCTC  796

seq1  ACAATAGTGGCTACAGGCTGGAGCCTCTGTTTTAAGTTTTCCAATCCGGC  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTGGCTACAGGCTGGAGCCTCTGTTTTAAGTTTTCCAATCCGGC  846

seq1  TACACAAGGTGGTTTTGAGAATTAACCAATCAAGCCGTACTTTCAGTCAT  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGGTGGTTTTGAGAATTAACCAATCAAGCCGTACTTTCAGTCAT  896

seq1  GGGTGTTGCACCAATCAGAGATTGTGATATTAAGATTTACATTTACGTAC  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGCACCAATCAGAGATTGTGATATTAAGATTTACATTTACGTAC  946

seq1  TGGGACGCTGGCGTTTTTTCTCTGTCCCCGCCCCTTTGTTCACTTCAGAG  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACGCTGGCGTTTTTTCTCTGTCCCCGCCCCTTTGTTCACTTCAGAG  996

seq1  CTCTGGAATTC  981
      |||||||||||
seq2  CTCTGGAATTC  1007