BAC Information

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BAC

Clone NameB6Ng01-036M14
Chromosome13 (Build37)
Map Location 111,594,112 - 111,719,286
singlet/doubletdoublet
Overlap geneLOC100040614
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036M14.bB6Ng01-036M14.g
ACCDH864850DH864851
length3351,062
definitionDH864850|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M14, 5' end.DH864851|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,718,953 - 111,719,286)(111,594,112 - 111,595,214)
sequence
gaattcttccttctttgtctagacagtgtcctatgttggagaggagtact
tcctttgcatgtgtgagccataaacccaccatccttgtgtctagaccact
ataaacactgacaaaagcacagcatcctatagccccaaagcaagccaagg
ctacattgaatttgagatttttaaatatctgtttttcaagatgaataaga
tattcacagattagggattttcctagtgtctgatattttttttttttttt
gcattatgcccactaagcctttgtcaagtagacctataagaaataagagt
gtggtaggtataggataggttgggagaaaaggttc
gaattctctacaggtgaggtgtgagtactatacacaagagaacatcgtcc
atttaacacctggttactagggtctaccattgtttactttataaatcagg
gcaagaactcaggtacttagtcagttattctatttcttgtaaaatgaatc
aaagactttaaggccgagtgtaaggttggctgctctgtcttattgtctta
ttgctctgacacagaatatgtctgctgagttcctctctgagacgatagtc
ttagtaacaataacaattgtatatttaatattgttattccacttagattc
tgatattccaggtggactttggttgctattaatttacacagctcttcaaa
catcattcaaatcttcagtgtggggaataataaagaattaaaaacttcat
tctcctgaaacaggcttcccagttcatttgttttaaggatgttacagact
cttagatctacaggaatacggtgtactttatgtttgagttgatggatttg
actagaagaaattttccctaaggaaaatagttatcacagaggctacaact
caaatacagtcactccagggaagccgaaagaactgtgtatagactcatag
ctggacttaattaatttgctgcttgtgcaacttgtaatattgaaaaaata
cttctgatattaaaaatgataaacagtaaattagacagaccaacattgat
ctcgtttatctgtttgcctcagacaattctctttattactagatctcaga
aagggacgctttaaaagaggggcgtcattgggaagctagaagcagatgat
gaaatatctgaagagactttagacacgagtcaatataatacatctttagt
cacatggtcaaatagcattcaaatatgttgagagacgtgaatcattttgt
aacacactcctcctcctgaaagcctctatatgcaccaaagagctgatatt
attggaactctgagaatatggaagatcttatttccatcaatgtatacttt
gaaaaagcataactgcttggaagtaaaattcagtgaaagcattttgtctg
cttgtactcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111718953_111719286
seq2: B6Ng01-036M14.b_37_371 (reverse)

seq1  GAACCTTTTCTCCCAACCTATCCTATACCTACCACACTCTTATTTCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTTCTCCCAACCTATCCTATACCTACCACACTCTTATTTCTTAT  50

seq1  AGGTCTACTTGACAAAGGCTTAGTGGGCATAATGCAAAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTACTTGACAAAGGCTTAGTGGGCATAATGCAAAAAAAAAAAAAAA  100

seq1  TATCAGACACTAGGAAAATCCCTAATCTGTGAATATCTTATTCATCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACACTAGGAAAATCCCTAATCTGTGAATATCTTATTCATCTTGA  150

seq1  AAAACAGATATTTAAAAATCTCAAATTCAATGTAGCCTTGGCTTGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATATTTAAAAATCTCAAATTCAATGTAGCCTTGGCTTGCTTTG  200

seq1  GGGCTATAGGATGCTGTGCTTTTGTCAGTGTTTATAGTGGTCTAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATAGGATGCTGTGCTTTTGTCAGTGTTTATAGTGGTCTAGACACA  250

seq1  AGGATGGTGGGTTTATGGCTCACACATGCAAAGGAAGTACTCCTCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGGGTTTATGGCTCACACATGCAAAGGAAGTACTCCTCTCCAA  300

seq1  CATA-CACACTGTCTAGACAAAGAAGGAAGAATTC  334
      ||||  |||||||||||||||||||||||||||||
seq2  CATAGGACACTGTCTAGACAAAGAAGGAAGAATTC  335

seq1: chr13_111594112_111595214
seq2: B6Ng01-036M14.g_69_1130

seq1  GAATTCTCTACAGGTGAGGTGTGAGTACTATACACAAGAGAACATCGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACAGGTGAGGTGTGAGTACTATACACAAGAGAACATCGTCC  50

seq1  ATTTAACACCTGGTTACTAGGGTCTACCATTGTTTACTTTATAAATCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACACCTGGTTACTAGGGTCTACCATTGTTTACTTTATAAATCAGG  100

seq1  GCAAGAACTCAGGTACTTAGTCAGTTATTCTATTTCTTGTAAAATGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACTCAGGTACTTAGTCAGTTATTCTATTTCTTGTAAAATGAATC  150

seq1  AAAGACTTTAAGGCCGAGTGTAAGGTTGGCTGCTCTGTCTTATTGTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTTAAGGCCGAGTGTAAGGTTGGCTGCTCTGTCTTATTGTCTTA  200

seq1  TTGCTCTGACACAGAATATGTCTGCTGAGTTCCTCTCTGAGACGATAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGACACAGAATATGTCTGCTGAGTTCCTCTCTGAGACGATAGTC  250

seq1  TTAGTAACAATAACAATTGTATATTTAATATTGTTATTCCACTTAGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACAATAACAATTGTATATTTAATATTGTTATTCCACTTAGATTC  300

seq1  TGATATTCCAGGTGGACTTTGGTTGCTATTAATTTACACAGCTCTTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCCAGGTGGACTTTGGTTGCTATTAATTTACACAGCTCTTCAAA  350

seq1  CATCATTCAAATCTTCAGTGTGGGGAATAATAAAGAATTAAAAACTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCAAATCTTCAGTGTGGGGAATAATAAAGAATTAAAAACTTCAT  400

seq1  TCTCCTGAAACAGGCTTCCCAGTTCATTTGTTTTAAGGATGTTACAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAAACAGGCTTCCCAGTTCATTTGTTTTAAGGATGTTACAGACT  450

seq1  CTTAGATCTACAGGAATACGGTGTACTTTATGTTTGAGTTGATGGATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATCTACAGGAATACGGTGTACTTTATGTTTGAGTTGATGGATTTG  500

seq1  ACTAGAAGAAATTTTCCCTAAGGAAAATAGTTATCACAGAGGCTACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGAAATTTTCCCTAAGGAAAATAGTTATCACAGAGGCTACAACT  550

seq1  CAAATACAGTCACTCCAGGGAAGCCGAAAGAACTGTGTATAGACTCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACAGTCACTCCAGGGAAGCCGAAAGAACTGTGTATAGACTCATAG  600

seq1  CTGGACTTAATTAATTTGCTGCTTGTGCAACTTGTAATATTGAAAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTAATTAATTTGCTGCTTGTGCAACTTGTAATATTGAAAAAATA  650

seq1  CTTCTGATATTAAAAATGATAAACAGTAAATTAGACAAGACCAACATTGA  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCTGATATTAAAAATGATAAACAGTAAATTAGAC-AGACCAACATTGA  699

seq1  TCTCGTTTAATCTGTTTGCCTCAGACAATTCTCTTTATTACTAGATCTCA  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTT-ATCTGTTTGCCTCAGACAATTCTCTTTATTACTAGATCTCA  748

seq1  GAAAGGGACGCTTTAAAAAGAGGGGCGTCATTGGGAAGCTAAGAAGCAGA  800
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GAAAGGGACGCTTT-AAAAGAGGGGCGTCATTGGGAAGCT-AGAAGCAGA  796

seq1  TGATGAAATATCTGAAGAGAACTTTAGACACGAGTCAA-ATAATAAATAC  849
      ||||||||||||||||||| |||||||||||||||||| ||||||     
seq2  TGATGAAATATCTGAAGAG-ACTTTAGACACGAGTCAATATAATA-----  840

seq1  AATCTTTAGTCACATGGTCAAATAGGCATTCAAATATGTTGAGAGACGGT  899
       ||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  CATCTTTAGTCACATGGTCAAATA-GCATTCAAATATGTTGAGAGAC-GT  888

seq1  GAATCATTTTGTAAACACAACTCTCCTCCTGAAAAGCCTCTTATAATGCC  949
      |||||||||||| ||||||   ||||||||| |||||||| ||| |||| 
seq2  GAATCATTTTGT-AACACACTCCTCCTCCTG-AAAGCCTC-TAT-ATGCA  934

seq1  ACAAACAGGAAGCTTGGAATTAATAATTGGAACTCTGAGAATATGGAAGA  999
       |||| ||      ||  |||    |||||||||||||||||||||||||
seq2  CCAAAGAG-----CTGATATT----ATTGGAACTCTGAGAATATGGAAGA  975

seq1  TCTTTATTTTCATCATATGTATTACTTTGATAAAGCAGTAACATTGCTTG  1049
      || |||||| ||||| ||||| |||||||| |||||| ||||  ||||||
seq2  TC-TTATTTCCATCA-ATGTA-TACTTTGAAAAAGCA-TAAC--TGCTTG  1019

seq1  GAAAAGTTAAAATATTTCAGTTGGAAAAGCATTTTGTCTGGCTTGTACCT  1099
      |||    |||||   ||||||    |||||||||||||| ||||||| ||
seq2  GAA---GTAAAA---TTCAGT---GAAAGCATTTTGTCT-GCTTGTA-CT  1058

seq1  CATG  1103
      ||||
seq2  CATG  1062