BAC Information

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BAC

Clone NameB6Ng01-036N18
Chromosome13 (Build37)
Map Location 37,053,350 - 37,175,904
singlet/doubletdoublet
Overlap geneF13a1
Upstream geneLOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758, Nrn1
Downstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N18.bB6Ng01-036N18.g
ACCDH864902DH864903
length524989
definitionDH864902|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N18, 5' end.DH864903|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,175,375 - 37,175,904)(37,053,350 - 37,054,355)
sequence
attacattaaataatgacaagaagtaaatagacataaaaagaaatatgta
tgtatgtatgtttgtatgtatgtatgtatgtattgagtgttgtatcccct
gaaaaattcaggttgagacttgattctcaatgcaaaagttgaatattttc
tatcaaatttgcattcttgatgctaagtatatatggataagacataaaag
aggggatgatttgtatgggggaagggtacaatgtggaataaaagtaatgg
agatgattatgaaactaagtgcttattatgtggtataataatgttaaaat
gaaacttgttactctgtacaatgattatgtgctaacaatatgtatgtgta
tatgatatattgcatattaaattatataatttaatataattatagtattt
atttaatattaattaatttaaataatcttctttagtacttatagtgtctt
atagcatattatgtaatacaaataattatataagaatatatattttatta
cattcgtgtgtgtgtgtgtgtgtg
gaattcaaaatatgtaactttgctgatatttatctctttttttatcttct
caaatcgctcatcaatttagcttaaaaaaacataattgaatcaaaatata
gggtcctgggatcaaggggctataaatgttgagacatcatgggacaacta
ttagttgggcaacctaatgttgtctgacttgtaaaacaagtggccccaga
ggaatatatttcagtgcccctctccacctatatttccctccagtgcactt
tgtacccagtaatctgcatagaagactcactgtggataaagactttctgt
gaataacagcagggctacttgtcaactactcccattatcctttgatccaa
tagctcgatactctgcataggcccagataagtgtgcagttaaactgaaga
ggttttgttgttcttgctgttgttgctcccatatgatcctatgcttattt
ccatcagaaaattttctgtgttgcatcggactttctatttctatgtcagt
ctttttcatgacattataagctctgtgagggcaagaactctgtttggttt
accaccatactcaatgaccagatacttgctgaataaatgagttgagattt
accagtatcagtagcatcactacatttactgtcactattaccaccattcc
caccaccattcctactgtccccacaatgaccctcttatcaccatcactat
ttgccacgggtccctaccattaacacattctgcacactactaccctcatc
ctcaccttacaatccccttaccaaccatccccgtttctattagcactact
actaccacatcaccatttgtcacccacatgatatcattgccacattaaca
tcattgccaccaaccactaccatcaccactattcccattctctgcacaat
catcctcacatattgtgctatactaaggctatcactatatgtcactattc
acttcaccaccatggtacactactgtactagcactcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37175375_37175904
seq2: B6Ng01-036N18.b_48_577 (reverse)

seq1  CACACACACACACACACACGAATGTAATAAAATATATATTCTTATATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACGAATGTAATAAAATATATATTCTTATATAAT  50

seq1  TATTTGTATTACATAATATGCTATAAGACACTATAAGTACTAAAGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATTACATAATATGCTATAAGACACTATAAGTACTAAAGAAGAT  100

seq1  TATTTAAATTAATTAATATTAAATAAATACTATAATTATATTAAATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATTAATTAATATTAAATAAATACTATAATTATATTAAATTATA  150

seq1  TAATTTAATATGCAATATATCATATACACATACATATTGTTAGCACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATATGCAATATATCATATACACATACATATTGTTAGCACATAA  200

seq1  TCATTGTACAGAGTAACAAGTTTCATTTTAACATTATTATACCACATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTACAGAGTAACAAGTTTCATTTTAACATTATTATACCACATAAT  250

seq1  AAGCACTTAGTTTCATAATCATCTCCATTACTTTTATTCCACATTGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTAGTTTCATAATCATCTCCATTACTTTTATTCCACATTGTACC  300

seq1  CTTCCCCCATACAAATCATCCCCTCTTTTATGTCTTATCCATATATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCATACAAATCATCCCCTCTTTTATGTCTTATCCATATATACTT  350

seq1  AGCATCAAGAATGCAAATTTGATAGAAAATATTCAACTTTTGCATTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAGAATGCAAATTTGATAGAAAATATTCAACTTTTGCATTGAGA  400

seq1  ATCAAGTCTCAACCTGAATTTTTCAGGGGATACAACACTCAATACATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCTCAACCTGAATTTTTCAGGGGATACAACACTCAATACATACA  450

seq1  TACATACATACAAACATACATACATACATATTTCTTTTTATGTCTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACAAACATACATACATACATATTTCTTTTTATGTCTATTTA  500

seq1  CTTCTTGTCATTATTTAATGTAATGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  CTTCTTGTCATTATTTAATGTAATGAATTC  530

seq1: chr13_37053350_37054355
seq2: B6Ng01-036N18.g_68_1056

seq1  GAATTCAAAATATGTAACTTTGCTGATATTTATCTCTTTTTTTATCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATATGTAACTTTGCTGATATTTATCTCTTTTTTTATCTTCT  50

seq1  CAAATCGCTCATCAATTTAGCTTAAAAAAACATAATTGAATCAAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGCTCATCAATTTAGCTTAAAAAAACATAATTGAATCAAAATATA  100

seq1  GGGTCCTGGGATCAAGGGGCTATAAATGTTGAGACATCATGGGACAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGGGATCAAGGGGCTATAAATGTTGAGACATCATGGGACAACTA  150

seq1  TTAGTTGGGCAACCTAATGTTGTCTGACTTGTAAAACAAGTGGCCCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGGCAACCTAATGTTGTCTGACTTGTAAAACAAGTGGCCCCAGA  200

seq1  GGAATATATTTCAGTGCCCCTCTCCACCTATATTTCCCTCCAGTGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATATTTCAGTGCCCCTCTCCACCTATATTTCCCTCCAGTGCACTT  250

seq1  TGTACCCAGTAATCTGCATAGAAGACTCACTGTGGATAAAGACTTTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAGTAATCTGCATAGAAGACTCACTGTGGATAAAGACTTTCTGT  300

seq1  GAATAACAGCAGGGCTACTTGTCAACTACTCCCATTATCCTTTGATCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACAGCAGGGCTACTTGTCAACTACTCCCATTATCCTTTGATCCAA  350

seq1  TAGCTCGATACTCTGCATAGGCCCAGATAAGTGTGCAGTTAAACTGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCGATACTCTGCATAGGCCCAGATAAGTGTGCAGTTAAACTGAAGA  400

seq1  GGTTTTGTTGTTCTTGCTGTTGTTGCTCCCATATGATCCTATGCTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTGTTCTTGCTGTTGTTGCTCCCATATGATCCTATGCTTATTT  450

seq1  CCATCAGAAAATTTTCTGTGTTGCATCGGACTTTCTATTTCTATGTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAAAATTTTCTGTGTTGCATCGGACTTTCTATTTCTATGTCAGT  500

seq1  CTTTTTCATGACATTATAAGCTCTGTGAGGGCAAGAACTCTGTTTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATGACATTATAAGCTCTGTGAGGGCAAGAACTCTGTTTGGTTT  550

seq1  ACCACCATACTCAATGACCAGATACTTGCTGAATAAATGAGTTGAGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATACTCAATGACCAGATACTTGCTGAATAAATGAGTTGAGATTT  600

seq1  ACCAGTATCAGTAGCATCACTACA-TTACTGTCACTATTACCACCATTCC  649
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCAGTATCAGTAGCATCACTACATTTACTGTCACTATTACCACCATTCC  650

seq1  CACCACCATTCCTACTGTCCCCACAATGACCCTCATTATCACCATCACTA  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACCACCATTCCTACTGTCCCCACAATGACCCTC-TTATCACCATCACTA  699

seq1  -TTGCCAC-GGTCACTACCATTAACACA-TCTGCACCACTACTACCCTCA  746
       ||||||| |||| |||||||||||||| |||||| ||||||||||||||
seq2  TTTGCCACGGGTCCCTACCATTAACACATTCTGCA-CACTACTACCCTCA  748

seq1  TCCTCACCTTAC-ATCCCCTTACCAACCATCCCCGTTTCTATAAGCACTA  795
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TCCTCACCTTACAATCCCCTTACCAACCATCCCCGTTTCTATTAGCACTA  798

seq1  CTACTACCACATCACCA-TTGTCACCACCATGATATCATTGCCACCATTA  844
      ||||||||||||||||| ||||||||  |||||||||||||||||  | |
seq2  CTACTACCACATCACCATTTGTCACCCACATGATATCATTGCCACATTAA  848

seq1  CATCATTGCCACC-ACCACTACCATCACCACTATTCCCATCCTCTGCACA  893
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  CATCATTGCCACCAACCACTACCATCACCACTATTCCCATTCTCTGCACA  898

seq1  ATCATCCTCAACATTATTGTTGCTATTACCTTAAGGTCTATCACTATAAT  943
      ||||||||| ||| ||||| ||||| |||  ||||| |||||||||| ||
seq2  ATCATCCTC-ACA-TATTG-TGCTA-TAC--TAAGG-CTATCACTAT-AT  940

seq1  GTCACCATAAATATCAACATCACCACCATGGTTACCACTACTGTTACCCT  993
      |||||      |||  || |||||||||||||   |||||||||    ||
seq2  GTCAC------TATTCACTTCACCACCATGGT--ACACTACTGT---ACT  979

seq1  AAGCACACTCACC  1006
      |    ||||||||
seq2  A---GCACTCACC  989