BAC Information

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BAC

Clone NameB6Ng01-037J14
Chromosome13 (Build37)
Map Location 17,908,866 - 18,045,460
singlet/doubletdoublet
Overlap geneRala, LOC434585
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5
Downstream geneLOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2, Vps41, Amph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037J14.bB6Ng01-037J14.g
ACCDH865408DH865409
length1,040976
definitionDH865408|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J14, 5' end.DH865409|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,908,866 - 17,909,545)(18,044,481 - 18,045,460)
sequence
gaattcaagcagggcaggaacctgaaggtgagagctgattaagcggtcac
agagggggtgctgctttctggattgctcatcattgtttacccagtgtgct
ttcttatagaacccagaaccaccagcccaggaatgaccccacccacaatg
aactaggccctcccccactgatccctaattaagaaaaggtcttacagggg
atcttatggaggcattttctcctcagttgaggttccctcctttcagatga
ctctagtttgtgtcaaattgacataaaattagccagcacaaccaccattc
caagccaccgcaaactcccgaccgctaaatcttagggaggtataccgtaa
cttataatgagatttatatttaataatacatgtctcctggaagaatcatt
gtccatccatgcaaaacacctccattaaaactcctttttaaaaattaaat
gttagctgggcagtggctcagtgactaagagcacttgctgttatttcaga
ggacctgggttcagatcttagcacccatgtggcattccacaaccgtctgt
aattccagttcctgggcatctgataaccttttctggtctttgtgggcatc
aggtacacacatggtgcacacaatacatgtagacaaaacagacacacaga
gaaagttaaaataaactggggctggagatatggttcagtggttaagagct
tgtactgctcttgtagaggatgtgggttcagcttccaccacccgtatcag
tcactttcacaactacctgtaactccagtttctgggggatctaatgcaat
ctgccttccttggcacctgtgcaagagtgtaaatacacttgattaacaga
agctgaagttggccctagacagccaagaagctaaaaagaatttagcagaa
aacagcctaaaataaaaggctcttcactctccctaattgtccgttaacct
tttaatacaatgtcttcggtctggttaacccttaacattaacttaataca
ttgctcttaataaggcattttgccatcggtatgaattgta
gaattcatgtcatgtgcaactagaagtgactgtattaagataccctgaga
agactttattactgggctacatacaaacatttgtttccctctccctatgg
acatgtggtttgcttacatactttgaacaaaaatagtacatgagtggaag
tatgcctcttccaagtcagagaaatatttgaaagatccttggtctgtggg
cattgtggtgcctctaattgagtttctaattgtggagaacaaacggagca
aactatacatgtatcatgtacaagcatgaggttaaaaccactgatatttt
gacgttttcccctcactgcagtatatctcaagcttatttcaatatagagg
aaacttaacttttaaatatttcctatggtttattcatcttagacaaaaaa
aaatcagtactggaccaagatggtattaatagcagtacacaaaacatgca
gttcttgtcctccctaggaagaaagaaacctccaactatctgagattaat
gtaagtattcaagaaatttaagaagagggattgtaagatcacgtttttcc
tcagacttcaatgattgcatgcctaagattggattttatacagcagcaat
aatagggaagtgattacagttgagttaggaaaatgactacagaaaccgtg
aaatgaatggcttcaagatatagcagtggggaagatctggagtttgagta
gatatataaaaaataaaaattcaaggaatgattcacatctatgagttgtg
attcagttgaacatgctgggtttgagctcatttcccttaaaacaaccaag
agaacttaggtagggtaatgcataatgttacgcatcaagcttaccagtgc
cctatagaagcctcatgccccagttttaaaaagtagctggaggagggaat
agaatccaatgaaatgaaaaaataggtgaagaaactgcggggtaaaaagg
gtgggacaggacagtaggacaatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17908866_17909545
seq2: B6Ng01-037J14.b_403_1085

seq1  TGAGATTTATATTTAATAATACATGTCTCCTGGAAGAATCATTGTCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTATATTTAATAATACATGTCTCCTGGAAGAATCATTGTCCATC  50

seq1  CATGCAAAACACCTCCATTAAAACTCCTTTTTAAAAATTAAATGTTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAACACCTCCATTAAAACTCCTTTTTAAAAATTAAATGTTAGCT  100

seq1  GGGCAGTGGCTCAGTGACTAAGAGCACTTGCTGTTATTTCAGAGGACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGGCTCAGTGACTAAGAGCACTTGCTGTTATTTCAGAGGACCTG  150

seq1  GGTTCAGATCTTAGCACCCATGTGGCATTCCACAACCGTCTGTAATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGATCTTAGCACCCATGTGGCATTCCACAACCGTCTGTAATTCCA  200

seq1  GTTCCTGGGCATCTGATAACCTTTTCTGGTCTTTGTGGGCATCAGGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGGCATCTGATAACCTTTTCTGGTCTTTGTGGGCATCAGGTACA  250

seq1  CACATGGTGCACACAATACATGTAGACAAAACAGACACACAGAGAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGCACACAATACATGTAGACAAAACAGACACACAGAGAAAGTT  300

seq1  AAAATAAACTGGGGCTGGAGATATGGTTCAGTGGTTAAGAGCTTGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACTGGGGCTGGAGATATGGTTCAGTGGTTAAGAGCTTGTACTG  350

seq1  CTCTTGTAGAGGATGTGGGTTCAGCTTCCACCACCCGTATCAGTCAC-TT  399
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTTGTAGAGGATGTGGGTTCAGCTTCCACCACCCGTATCAGTCACTTT  400

seq1  CACAACTACCTGTAACTCCAG-TTCTGGGGGATCTAATGCAATCTGCCTT  448
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACAACTACCTGTAACTCCAGTTTCTGGGGGATCTAATGCAATCTGCCTT  450

seq1  CCTTGGGCACCTGTGCAAGAGTGTAAAATAACACTTGAATAACAGAAGCT  498
      |||| ||||||||||||||||||||||   |||||||| |||||||||||
seq2  CCTT-GGCACCTGTGCAAGAGTGTAAA--TACACTTGATTAACAGAAGCT  497

seq1  G-AGTTGGCCCTAGACAGCCAAGAAGCT-AAAAGACTTTAGCAG-AAACA  545
      | |||||||||||||||||||||||||| |||||| |||||||| |||||
seq2  GAAGTTGGCCCTAGACAGCCAAGAAGCTAAAAAGAATTTAGCAGAAAACA  547

seq1  GCCTAGAA-AAGAGGCTC-TCACTCTCCCTAA-TGT-CGTTAACC-TTTA  590
      ||||| || || |||||| ||||||||||||| ||| |||||||| ||||
seq2  GCCTAAAATAAAAGGCTCTTCACTCTCCCTAATTGTCCGTTAACCTTTTA  597

seq1  ATACAGTGTCTTCTGTTCTGGTAACCCCTAACCATAAACTTAGTTCATTG  640
      ||||| ||||||| | |||||| | |||| | ||| |||||| | |||||
seq2  ATACAATGTCTTC-GGTCTGGTTAACCCTTAACATTAACTTAATACATTG  646

seq1  CTCTGTAATAAGTGTCATTTTGCTACTGTTATGAATTGTA  680
      |||| ||||||  | |||||||| |  | |||||||||||
seq2  CTCT-TAATAA--GGCATTTTGCCATCGGTATGAATTGTA  683

seq1: chr13_18044481_18045460
seq2: B6Ng01-037J14.g_69_1044 (reverse)

seq1  CCCATTGTCCTACCTGTCCCTGTCCCATCCCTTCTTTACCCCGCAGTATT  50
      |||||||||||| |||| ||||||||| ||||| ||||||||||||| ||
seq2  CCCATTGTCCTA-CTGT-CCTGTCCCA-CCCTT-TTTACCCCGCAGT-TT  45

seq1  CTTCACCTA-TTTTTCATTTCATATGTATTCTATTCCCTCCTCCAGCTAC  99
      ||||||||| ||||||||||||| || |||||||||||||||||||||||
seq2  CTTCACCTATTTTTTCATTTCAT-TGGATTCTATTCCCTCCTCCAGCTAC  94

seq1  TTTTTAAAACTGTGGCATGAGGCTTCTATAGGGCACTGGTAAGCTTGATG  149
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACTGGGGCATGAGGCTTCTATAGGGCACTGGTAAGCTTGATG  144

seq1  CGT-ACA-TATGCATTA-CCTACCTAATGTCTCTTGGTTGTTTTAAGGGA  196
      ||| ||| ||||||||| |||||||||  |||||||||||||||||||||
seq2  CGTAACATTATGCATTACCCTACCTAAGTTCTCTTGGTTGTTTTAAGGGA  194

seq1  AATGAGCTCAAACCCAGCATGTTCAAACTGAATCACAACTCATAGATGTG  246
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATGAGCTCAAACCCAGCATGTTC-AACTGAATCACAACTCATAGATGTG  243

seq1  AATCATTCCTTTGAATTTTTATTTTTTATATATCTACTCAAACTCCAGAT  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCC-TTGAATTTTTATTTTTTATATATCTACTCAAACTCCAGAT  292

seq1  CTTCCCCACTGCTATATCTTGAAGCCATTCATTTCACGGTTTCTGTAGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCACTGCTATATCTTGAAGCCATTCATTTCACGGTTTCTGTAGTC  342

seq1  ATTTTCCTAACTCAACTGTAATCACTTCCCTATTATTGCTGCTGTATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTAACTCAACTGTAATCACTTCCCTATTATTGCTGCTGTATAAA  392

seq1  ATCCAATCTTAGGCATGCAATCATTGAAGTCTGAGGAAAAACGTGATCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCTTAGGCATGCAATCATTGAAGTCTGAGGAAAAACGTGATCTT  442

seq1  ACAATCCCTCTTCTTAAATTTCTTGAATACTTACATTAATCTCAGATAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCCTCTTCTTAAATTTCTTGAATACTTACATTAATCTCAGATAGT  492

seq1  TGGAGGTTTCTTTCTTCCTAGGGAGGACAAGAACTGCATGTTTTGTGTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTTCTTTCTTCCTAGGGAGGACAAGAACTGCATGTTTTGTGTAC  542

seq1  TGCTATTAATACCATCTTGGTCCAGTACTGATTTTTTTTTGTCTAAGATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAATACCATCTTGGTCCAGTACTGATTTTTTTTTGTCTAAGATG  592

seq1  AATAAACCATAGGAAATATTTAAAAGTTAAGTTTCCTCTATATTGAAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCATAGGAAATATTTAAAAGTTAAGTTTCCTCTATATTGAAATA  642

seq1  AGCTTGAGATATACTGCAGTGAGGGGAAAACGTCAAAATATCAGTGGTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAGATATACTGCAGTGAGGGGAAAACGTCAAAATATCAGTGGTTT  692

seq1  TAACCTCATGCTTGTACATGATACATGTATAGTTTGCTCCGTTTGTTCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCATGCTTGTACATGATACATGTATAGTTTGCTCCGTTTGTTCTC  742

seq1  CACAATTAGAAACTCAATTAGAGGCACCACAATGCCCACAGACCAAGGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTAGAAACTCAATTAGAGGCACCACAATGCCCACAGACCAAGGAT  792

seq1  CTTTCAAATATTTCTCTGACTTGGAAGAGGCATACTTCCACTCATGTACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATATTTCTCTGACTTGGAAGAGGCATACTTCCACTCATGTACT  842

seq1  ATTTTTGTTCAAAGTATGTAAGCAAACCACATGTCCATAGGGAGAGGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTCAAAGTATGTAAGCAAACCACATGTCCATAGGGAGAGGGAA  892

seq1  ACAAATGTTTGTATGTAGCCCAGTAATAAAGTCTTCTCAGGGTATCTTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTTGTATGTAGCCCAGTAATAAAGTCTTCTCAGGGTATCTTAA  942

seq1  TACAGTCACTTCTAGTTGCACATGACATGAATTC  980
      ||||||||||||||||||||||||||||||||||
seq2  TACAGTCACTTCTAGTTGCACATGACATGAATTC  976