BAC Information

Click to search

BAC

Clone NameB6Ng01-038E11
Chromosome13 (Build37)
Map Location 86,022,358 - 86,023,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038E11.bB6Ng01-038E11.g
ACCDH865887DH865888
length4211,009
definitionDH865887|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E11, 5' end.DH865888|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
atcttggtagatttttcatcacatgatctactatgttcatagcagcctta
tttataatagccagagctagaaagaacccagatgtcctacaacagaggaa
tggataaagaaaatgtagcacatttacacaacagactactactcagctat
taaaaacaatgacttcatcaaattcttaggcaaatggatggaactagaaa
ttatcttgagtgaagtaacccagtaatgaaagaaaacacatggtatgaac
tcactgataagtggatattagcctaaaagcttggaatacccaggatacaa
ttcacaaattgtatgaagtttaagaaggaagaccaaaatgtgaatgcttc
agtccttcttagaagggagaacaaagtaacatggtaggtagagggtagga
gggacttgggaggaagagagt

gaattcatttgcataatcagtgtactgtccttgctgaggtatatttagaa
gggccaagtttgcaagaatgtgatcaagatgggtttgagaaaacagcaat
ttcttcctttttagactctgagagatgcacttttgggcagtgtaggatta
atgtaatatgttagaagggggaaattaatttatagaacatattacttcaa
aagcagtcttacttgggtaatacaaattcattaaaatgtatttggaaata
tttacgagtgtcaaggctactcatgagctctaaagtcaatctgcatcatt
ttgaaccacttagtagaaatatgtatcttctgattttagggtaacaaatg
attagccacatttcttgcctgcatcacctaaaacttcttggtacctattt
catcatctgtggaatgcaaacgttaaattcatagttcgtgaacttagggc
ccctagatattttatagatccatctgggtattttaaagatatgtgaatat
ggaagctattctttctatttgctagtgttgcatgtaccttgtgctagcat
acagaagaacagtctccttgtccctctcagaaatgcttaacagtgtgtta
tttctcagcctttgctttcaacactcttgcttcttcaattgacaatgtca
gtttaatgactggagaaaaggattgactcgattaagaatgagtaaacagg
ttgcatagtgaagcatggctgagtgtcattagctgcagcaaaagaactga
aaagccttaggactagagcgaccagtaaaaatcaccacaagtgtcaagca
ttaacattgtagttttatagtctctgtgagaattgggacattaacagttg
cctaatgaatacatttctcaccataatatatgaccatccttttctctatt
cacaagcttttctatattcaatgtacatgtttttcaaggacagaatgcca
actttctgctataaacaagaacaaagacaaaagtagctagggagcagaga
catctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86022358_86023373
seq2: B6Ng01-038E11.g_68_1076 (reverse)

seq1  GTAGAGATGTCTCTTGCTCCCTAGCTACTTTTGTCCTTTTGTTCTTTGTT  50
      ||||||||||||| |||||||||||||||||||||  |||||||||   |
seq2  GTAGAGATGTCTC-TGCTCCCTAGCTACTTTTGTC--TTTGTTCTT--GT  45

seq1  TTATAGCAGAAAGTTGGCATTCTGTCCTTGAAAAAACATGTTACATTGAA  100
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  TTATAGCAGAAAGTTGGCATTCTGTCCTTG-AAAAACATG-TACATTGAA  93

seq1  TATAGAAAAGCTTGTGAATAGAGAAAAGGATGGTCATATATTATGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAAGCTTGTGAATAGAGAAAAGGATGGTCATATATTATGGTGAG  143

seq1  AAATGTATTCATTAGGCAACTGTTAATGTCCCAATTCTCACAGAGACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTCATTAGGCAACTGTTAATGTCCCAATTCTCACAGAGACTAT  193

seq1  AAAACTACAATGTTAATGCTTGACACTTGTGGTGATTTTTACTGGTCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACAATGTTAATGCTTGACACTTGTGGTGATTTTTACTGGTCGCT  243

seq1  CTAGTCCTAAGGCTTTTCAGTTCTTTTGCTGCAGCTAATGACACTCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCTAAGGCTTTTCAGTTCTTTTGCTGCAGCTAATGACACTCAGCC  293

seq1  ATGCTTCACTATGCAACCTGTTTACTCATTCTTAATCGAGTCAATCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCACTATGCAACCTGTTTACTCATTCTTAATCGAGTCAATCCTTT  343

seq1  TCTCCAGTCATTAAACTGACATTGTCAATTGAAGAAGCAAGAGTGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTCATTAAACTGACATTGTCAATTGAAGAAGCAAGAGTGTTGAA  393

seq1  AGCAAAGGCTGAGAAATAACACACTGTTAAGCATTTCTGAGAGGGACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGCTGAGAAATAACACACTGTTAAGCATTTCTGAGAGGGACAAG  443

seq1  GAGACTGTTCTTCTGTATGCTAGCACAAGGTACATGCAACACTAGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTTCTTCTGTATGCTAGCACAAGGTACATGCAACACTAGCAAAT  493

seq1  AGAAAGAATAGCTTCCATATTCACATATCTTTAAAATACCCAGATGGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATAGCTTCCATATTCACATATCTTTAAAATACCCAGATGGATC  543

seq1  TATAAAATATCTAGGGGCCCTAAGTTCACGAACTATGAATTTAACGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATATCTAGGGGCCCTAAGTTCACGAACTATGAATTTAACGTTTG  593

seq1  CATTCCACAGATGATGAAATAGGTACCAAGAAGTTTTAGGTGATGCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACAGATGATGAAATAGGTACCAAGAAGTTTTAGGTGATGCAGGC  643

seq1  AAGAAATGTGGCTAATCATTTGTTACCCTAAAATCAGAAGATACATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGTGGCTAATCATTTGTTACCCTAAAATCAGAAGATACATATTT  693

seq1  CTACTAAGTGGTTCAAAATGATGCAGATTGACTTTAGAGCTCATGAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAGTGGTTCAAAATGATGCAGATTGACTTTAGAGCTCATGAGTAG  743

seq1  CCTTGACACTCGTAAATATTTCCAAATACATTTTAATGAATTTGTATTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACACTCGTAAATATTTCCAAATACATTTTAATGAATTTGTATTAC  793

seq1  CCAAGTAAGACTGCTTTTGAAGTAATATGTTCTATAAATTAATTTCCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAAGACTGCTTTTGAAGTAATATGTTCTATAAATTAATTTCCCCC  843

seq1  TTCTAACATATTACATTAATCCTACACTGCCCAAAAGTGCATCTCTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACATATTACATTAATCCTACACTGCCCAAAAGTGCATCTCTCAGA  893

seq1  GTCTAAAAAGGAAGAAATTGCTGTTTTCTCAAACCCATCTTGATCACATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAAAGGAAGAAATTGCTGTTTTCTCAAACCCATCTTGATCACATT  943

seq1  CTTGCAAACTTGGCCCTTCTAAATATACCTCAGCAAGGACAGTACACTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAACTTGGCCCTTCTAAATATACCTCAGCAAGGACAGTACACTGA  993

seq1  TTATGCAAATGAATTC  1016
      ||||||||||||||||
seq2  TTATGCAAATGAATTC  1009


| Home | SequenceCutter | Blast | Download |