BAC Information

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BAC

Clone NameB6Ng01-039I01
Chromosome13 (Build37)
Map Location 88,813,266 - 88,923,521
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675707, LOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I01.bB6Ng01-039I01.g
ACCDH866759DH866760
length1,1591,148
definitionDH866759|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I01, 5' end.DH866760|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,813,266 - 88,814,436)(88,922,347 - 88,923,521)
sequence
gaattctgcatgcagatttttctaaagagataacataaaattcagccaaa
tcaatgctttgatttcagtctttacatttttaaatagagaacccagacac
cacacccttccttctgagctaaatagctgagtaaatatgaagctgttatt
tgaagctactatgttttcttggcaatcaagagtgtagagaactaataaag
cattcattaaaaggaaacttaacttatagccttttattttagctgtgcca
tgtacttgattttatcatgccatgaattctgacttagatcatatataaga
atttgtttctctaaatcatgaggcctgtctcttccactactcattaaatg
taaaatattactttctaatgcaacatctttaaaaacatttgataatgtta
gacattcattcattgctatgaattatgttacaattttactagaagactat
atatcattaagatattgaaattctcacatttaacttgcaatgatgggctt
agagtttagccttttttgctaccttgacatcaaattatttttaatttccc
tttttaaggctactggaatgtagtgacagctgttgcactttcctgttatg
tgatcacaggttgaaaacgattgaatgtgctaaatgagagaactgagtgt
tagtttacctcttgcactactttccaagctcccatcttcacctgcatcat
tttggcaacagcaagcgttacattttaatcacactttctgaccttagctc
tctcctcatctattgaaaactaaattaggccttatacccttctgaatttt
ctatgtaaggcctaagttacagctatttgatgttaacttgatttgaaatt
atgttaaagtaattattttaaaagtatttcaatttttttataatgtacaa
aattatgtgcttatttgttgggagccatggcttcagccaaggccttgtgg
aaaatttctagcttacataaacaatcctgagagaacattcatggtcatga
cggaaagcttctagctttgagaaaaatagtaaaaggaataactaatttaa
aagttgtggaatgctactgtactttaataaggcctttttctgtaaataag
attccctcagctcattatttagctggactggcttcgtcttgatgcattct
tagtttcca
gaattctcttaaaatagggatattaaagcttgtgattcaggctggagaga
tgactcagcagttaagagcaccgactgctcttccgaaggtcctgagttca
attcccagcaaccacatgatggctcacaaccatccctagcaagatctgac
tctctcttctggagtgtctaaagacagctaccgtgtacttacatagaata
aataaagaaataaacaaataaataaatctaaaaaaaaaaaaaaaacagct
tgtgattcgagctagagtattaagagatagaagattctgaagtgataagt
gaagtcacagaagctattgagtctttttccaccccgtgaccatgcaatgc
aagatgatcttctatcaactaggaagtgagtctgcatcagataacaaatc
tgcttgtcccttggtcttagattttccatattctctatcaccatcattct
gttctgtgtgacaaactcctgtgttctgtgtgactcctgtgttctgtgtg
acaaactcctgtggcaagaatactggctgttcagtaagaaatttttttct
ttttagagaataataataaataaaaatacttgacattttagtttaaatct
gatggctcagtccaggtctctacttaacaactgaaatggccatggctaat
ctttgagtgtatgtagttagaacaggtgtgctggttagagcaagtaggta
attcctctaagtgggtgtgtccttagttgtacattatttttttctaaagc
ctactgatttcactcaatatttacatatggtcctggggttaagacaatct
actagagtctgaatacacaggtacacagctttgaagaaaatgacaccttc
atcaccaacagcttttaatagccgacaagtcatcagcgaatggtggagca
catgagtttctctctttcatgttgagatttggaaaatttcactttcatgg
attttagcatgtagacagtcactgtgagtgtgtgtaaattatccaatcat
gccttgcaagtatgtttcttggaaaatgtctactatctttgagtaggttg
atcacatttgtcatcatacgttatttcctccctgttctagtcttagagag
gtgtgaccgaatgtccattggaggtgtgtatcatcagactacattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88813266_88814436
seq2: B6Ng01-039I01.b_45_1203

seq1  GAATTCTGCATGCAGATTTTTCTAAAGAGATAACATAAAATTCAGCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGCAGATTTTTCTAAAGAGATAACATAAAATTCAGCCAAA  50

seq1  TCAATGCTTTGATTTCAGTCTTTACATTTTTAAATAGAGAACCCAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTTTGATTTCAGTCTTTACATTTTTAAATAGAGAACCCAGACAC  100

seq1  CACACCCTTCCTTCTGAGCTAAATAGCTGAGTAAATATGAAGCTGTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTTCCTTCTGAGCTAAATAGCTGAGTAAATATGAAGCTGTTATT  150

seq1  TGAAGCTACTATGTTTTCTTGGCAATCAAGAGTGTAGAGAACTAATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTACTATGTTTTCTTGGCAATCAAGAGTGTAGAGAACTAATAAAG  200

seq1  CATTCATTAAAAGGAAACTTAACTTATAGCCTTTTATTTTAGCTGTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTAAAAGGAAACTTAACTTATAGCCTTTTATTTTAGCTGTGCCA  250

seq1  TGTACTTGATTTTATCATGCCATGAATTCTGACTTAGATCATATATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGATTTTATCATGCCATGAATTCTGACTTAGATCATATATAAGA  300

seq1  ATTTGTTTCTCTAAATCATGAGGCCTGTCTCTTCCACTACTCATTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTCTCTAAATCATGAGGCCTGTCTCTTCCACTACTCATTAAATG  350

seq1  TAAAATATTACTTTCTAATGCAACATCTTTAAAAACATTTGATAATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTACTTTCTAATGCAACATCTTTAAAAACATTTGATAATGTTA  400

seq1  GACATTCATTCATTGCTATGAATTATGTTACAATTTTACTAGAAGACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCATTCATTGCTATGAATTATGTTACAATTTTACTAGAAGACTAT  450

seq1  ATATCATTAAGATATTGAAATTCTCACATTTAACTTGCAATGATGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTAAGATATTGAAATTCTCACATTTAACTTGCAATGATGGGCTT  500

seq1  AGAGTTTAGCCTTTTTTGCTACCTTGACATCAAATTATTTTTAATTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTAGCCTTTTTTGCTACCTTGACATCAAATTATTTTTAATTTCCC  550

seq1  TTTTTAAGGCTACTGGAATGTAGTGACAGCTGTTGCACTTTCCTGTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGGCTACTGGAATGTAGTGACAGCTGTTGCACTTTCCTGTTATG  600

seq1  TGATCACAGGTTGAAAACGATTGAATGTGCTAAATGAGAGAACTGAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAGGTTGAAAACGATTGAATGTGCTAAATGAGAGAACTGAGTGT  650

seq1  TAGTTTACCTCTTGCACTACTTTCCAAGCTCCCATCTTCACCTGCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACCTCTTGCACTACTTTCCAAGCTCCCATCTTCACCTGCATCAT  700

seq1  TTTGGCAACAGCAAGCGTTACATTTTAATCACACTTTCTGACCTTAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAACAGCAAGCGTTACATTTTAATCACACTTTCTGACCTTAGCTC  750

seq1  TCTCCTCATCTATTGAAAACTAAATTAGGCCTTATACCCTTCTGAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCATCTATTGAAAACTAAATTAGGCCTTATACCCTTCTGAATTTT  800

seq1  CTATGTAAGGCCTAAGTTACAGCTATTTGATGTTAACTTGATTTGAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAAGGCCTAAGTTACAGCTATTTGATGTTAACTTGATTTGAAATT  850

seq1  ATGTTAAAGTAATTATTTTAAAAGTATTTCAATTTTTTTATAATGTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAGTAATTATTTTAAAAGTATTTCAATTTTTTTATAATGTACAA  900

seq1  AATTATGTGCTTATTTGTTGGGAGCCATGGCTTCAGCCAAGGCCTTGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTGCTTATTTGTTGGGAGCCATGGCTTCAGCCAAGGCCTTGTGG  950

seq1  AAAATTTCTAGCTTACATAAACAATCCTGAGAGAACATTCATGGTCATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTAGCTTACATAAACAATCCTGAGAGAACATTCATGGTCATGA  1000

seq1  CGGAAAGCTTCTTAGCTTTGAAGAAAAATAGTAAAAGGACATAAACTAAT  1050
      ||||||||||| |||||||| |||||||||||||||||| || |||||||
seq2  CGGAAAGCTTC-TAGCTTTG-AGAAAAATAGTAAAAGGA-AT-AACTAAT  1046

seq1  TTAAAACGTTGTGAAATGCTACTGTACTGTATATAAGGCCTTATTCTGTA  1100
      |||||| |||||| |||||||||||||| || |||||||||| |||||| 
seq2  TTAAAA-GTTGTGGAATGCTACTGTACTTTA-ATAAGGCCTTTTTCTGT-  1093

seq1  AAATAAGATTCCCTCAAGCTCATTATGTAGCCTAGACTGGCTTCGTACTT  1150
      ||||||||||||||| |||||||||| ||| || |||||||||||| |||
seq2  AAATAAGATTCCCTC-AGCTCATTATTTAG-CTGGACTGGCTTCGT-CTT  1140

seq1  GATGCAATCCTTATGTTTCCA  1171
      ||||| || |||| |||||||
seq2  GATGC-ATTCTTA-GTTTCCA  1159

seq1: chr13_88922347_88923521
seq2: B6Ng01-039I01.g_65_1212 (reverse)

seq1  GAGAATAGTAGTCTGAATGATACACACCTCCAAATGGGACATCTGTGTCA  50
      |||||| |||||||| |||||||||||||||||   |||||| |  ||||
seq2  GAGAAT-GTAGTCTG-ATGATACACACCTCCAA--TGGACAT-TCGGTCA  45

seq1  CAACCTTCCTC-CTAAGACTTAAGAACAAGGGGAGGAAAATACGTAAATG  99
      ||     |||| ||||||||  ||||||  |||||||||  ||||  |||
seq2  CA-----CCTCTCTAAGACT--AGAACA--GGGAGGAAATAACGT--ATG  84

seq1  ATGACAAAATGTGAATCAACCCCTACCTTCAAAGATAGTAGACATTTTCC  149
      ||||| ||||||| |||||  |||||  ||||||||||||||||||||||
seq2  ATGAC-AAATGTG-ATCAA--CCTAC--TCAAAGATAGTAGACATTTTCC  128

seq1  AAGAAACATTACTTGCAAGGCATGATTGGATAATTTTACACACACTCACA  199
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AAGAAACA-TACTTGCAAGGCATGATTGGATAA-TTTACACACACTCACA  176

seq1  GTGACTGTCTACATGCTAAAAATCCATGAAAGTTGAAATTTTCCAAAATC  249
      ||||||||||||||||| |||||||||||||| ||||||||||| |||||
seq2  GTGACTGTCTACATGCT-AAAATCCATGAAAG-TGAAATTTTCC-AAATC  223

seq1  TCAACATGAAAGAGAGAAAACTCATGTGCTCCACCATTCGCTGATGACTT  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCAACATGAAAGAGAG-AAACTCATGTGCTCCACCATTCGCTGATGACTT  272

seq1  GTCGGCTATTGAAAGCTGTTGGTGATGAAGGTGTCATTTTCTTCAAAGCT  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCTATTAAAAGCTGTTGGTGATGAAGGTGTCATTTTCTTCAAAGCT  322

seq1  GTGTACCTGTGTATTCAGACTCTAGTAGATTGTCTTAACCCCAGGACCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTGTGTATTCAGACTCTAGTAGATTGTCTTAACCCCAGGACCAT  372

seq1  ATGTAAATATTGAGTGAAATCAGTAGGCTTTAGAAAAAAATAATGTACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATATTGAGTGAAATCAGTAGGCTTTAGAAAAAAATAATGTACAA  422

seq1  CTAAGGACACACCCACTTAGAGGAATTACCTACTTGCTCTAACCAGCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGACACACCCACTTAGAGGAATTACCTACTTGCTCTAACCAGCACA  472

seq1  CCTGTTCTAACTACATACACTCAAAGATTAGCCATGGCCATTTCAGTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTAACTACATACACTCAAAGATTAGCCATGGCCATTTCAGTTGT  522

seq1  TAAGTAGAGACCTGGACTGAGCCATCAGATTTAAACTAAAATGTCAAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAGACCTGGACTGAGCCATCAGATTTAAACTAAAATGTCAAGTA  572

seq1  TTTTTATTTATTATTATTCTCTAAAAAGAAAAAAATTTCTTACTGAACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTATTATTATTCTCTAAAAAGAAAAAAATTTCTTACTGAACAG  622

seq1  CCAGTATTCTTGCCACAGGAGTTTGTCACACAGAACACAGGAGTCACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTCTTGCCACAGGAGTTTGTCACACAGAACACAGGAGTCACACA  672

seq1  GAACACAGGAGTTTGTCACACAGAACAGAATGATGGTGATAGAGAATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGGAGTTTGTCACACAGAACAGAATGATGGTGATAGAGAATATG  722

seq1  GAAAATCTAAGACCAAGGGACAAGCAGATTTGTTATCTGATGCAGACTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTAAGACCAAGGGACAAGCAGATTTGTTATCTGATGCAGACTCA  772

seq1  CTTCCTAGTTGATAGAAGATCATCTTGCATTGCATGGTCACGGGGTGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGTTGATAGAAGATCATCTTGCATTGCATGGTCACGGGGTGGAA  822

seq1  AAAGACTCAATAGCTTCTGTGACTTCACTTATCACTTCAGAATCTTCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCAATAGCTTCTGTGACTTCACTTATCACTTCAGAATCTTCTAT  872

seq1  CTCTTAATACTCTAGCTCGAATCACAAGCTGTTTTTTTTTTTTTTTTAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATACTCTAGCTCGAATCACAAGCTGTTTTTTTTTTTTTTTTAGA  922

seq1  TTTATTTATTTGTTTATTTCTTTATTTATTCTATGTAAGTACACGGTAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTGTTTATTTCTTTATTTATTCTATGTAAGTACACGGTAGC  972

seq1  TGTCTTTAGACACTCCAGAAGAGAGAGTCAGATCTTGCTAGGGATGGTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTAGACACTCCAGAAGAGAGAGTCAGATCTTGCTAGGGATGGTTG  1022

seq1  TGAGCCATCATGTGGTTGCTGGGAATTGAACTCAGGACCTTCGGAAGAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCATGTGGTTGCTGGGAATTGAACTCAGGACCTTCGGAAGAGC  1072

seq1  AGTCGGTGCTCTTAACTGCTGAGTCATCTCTCCAGCCTGAATCACAAGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTGCTCTTAACTGCTGAGTCATCTCTCCAGCCTGAATCACAAGCT  1122

seq1  TTAATATCCCTATTTTAAGAGAATTC  1175
      ||||||||||||||||||||||||||
seq2  TTAATATCCCTATTTTAAGAGAATTC  1148