BAC Information

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BAC

Clone NameB6Ng01-040C16
Chromosome13 (Build37)
Map Location 66,722,401 - 66,847,297
singlet/doubletdoublet
Overlap geneMzf6d, Vmn2r-ps106, LOC666027
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneLOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040C16.bB6Ng01-040C16.g
ACCDH867218DH867219
length6791,035
definitionDH867218|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C16, 5' end.DH867219|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,722,401 - 66,723,031)(66,846,254 - 66,847,297)
sequence
gaattccactttggtaaaatacatgccacatgttttccagtattaattgc
ccatcccccaccccaccccttcctcactataaatttctagatattttctt
agaactaactttcaggtaaaggtctgttctcatgaggtttctctcctgtg
tgtagtctctgatgtcagagatgacctaacagtaaagactttgaacattt
acatttgaaagatcaccctcctgtatgtattctttgatgagttctaagat
gatctttcttggtgaagggtttgtcttatttgcttcatttttagatattc
tctagtgtgtgcattctttgatgagtgtaaaaactacatttaagtctaaa
gaattcatcacattcattacatttataaggtttctctcctgtatgaatta
cctgatgaatactaagactgtgtttgtgggtaaagcgtttgtcacattca
ctaaacttttaaggcttctctcctgtatgaattctctgatgatttctaag
actgcatttgttactaaagcatttgtcacattccctacatttattaggtt
tctctcctgtatgaattctctgatgaattataagatcatatttgtgagtg
aagcatttgtcacattcactacattgataagggttttcccctgtatgaat
tctctgatgaacattaagattatattttt
gaattcccggttcttggataacccacttgccactttcgttgtggcaggaa
agaagatgttgatactatgaaaaagaggactaggaaggcagatgagagaa
aagagagaagctaattttacatagcacagcaaattctttgccctaactct
gagtctaaccctaaccctgatatttcttctttatgtaatagagatcctag
agattcaatgggatataagaataatagtggccacctcaagcctacccctg
agcctaaccctgatttatcctaaacctttaaccctatcttaaacctcaca
ccttaatttcctaaccaccctaaccctaatcctaaccacccttatcctaa
tcctaaccataaccctctgatcgcctaatcctaactccagtcctgcttac
tgtgggggatatctcttaataatatataatatttcttaattatacctttg
aattgagaaactcttgcttaatctcgatcttttgagatgttcagatccac
ctttaatctaggcaatagattcttttggcatcccgcatatatgaaagaca
ttgaacagggtagttctttcactttttttatacgtgccattcttttttat
aaaacaaaggtgatttgcttgtgtgatttttctaactagcattaaaaagt
acttatttctttagaattctggtacatcagctataataacccgcagcagg
aaatcaaccagtccttgatttttctaatttctgttggctgagagccttta
ttgggacattctattaaatttcctttctatctacatagagagattcattc
tatattttgagatatgtttatctagagaaccttgtactaatccaactgtg
gtttttctctatttcgccactgatggagatgtgctgtctattaagagggc
acaacagtgtttcccttatgtttctggcttttctcccaggttatttaatg
cctatcattggtgaaagggtgctgtgttccctgagcccagcatgagcaca
atcaaactctcgtttctaaaattcctcttatgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66722401_66723031
seq2: B6Ng01-040C16.b_43_673

seq1  GAATTCCACTTTGGTAAAATACATGCCACATGTTTTCCAGTATTAATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTGGTAAAATACATGCCACATGTTTTCCAGTATTAATTGC  50

seq1  CCATCCCCCACCCCACCCCTTCCTCACTATAAATTTCTAGATATTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCCACCCCACCCCTTCCTCACTATAAATTTCTAGATATTTTCTT  100

seq1  AGAACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGTTTCTCTCCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAACTTTCAGGTAAAGGTCTGTTCTCATGAGGTTTCTCTCCTGTG  150

seq1  TGTAGTCTCTGATGTCAGAGATGACCTAACAGTAAAGACTTTGAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTCTGATGTCAGAGATGACCTAACAGTAAAGACTTTGAACATTT  200

seq1  ACATTTGAAAGATCACCCTCCTGTATGTATTCTTTGATGAGTTCTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAAGATCACCCTCCTGTATGTATTCTTTGATGAGTTCTAAGAT  250

seq1  GATCTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCATTTTTAGATATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCTTGGTGAAGGGTTTGTCTTATTTGCTTCATTTTTAGATATTC  300

seq1  TCTAGTGTGTGCATTCTTTGATGAGTGTAAAAACTACATTTAAGTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGTGTGCATTCTTTGATGAGTGTAAAAACTACATTTAAGTCTAAA  350

seq1  GAATTCATCACATTCATTACATTTATAAGGTTTCTCTCCTGTATGAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACATTCATTACATTTATAAGGTTTCTCTCCTGTATGAATTA  400

seq1  CCTGATGAATACTAAGACTGTGTTTGTGGGTAAAGCGTTTGTCACATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAATACTAAGACTGTGTTTGTGGGTAAAGCGTTTGTCACATTCA  450

seq1  CTAAACTTTTAAGGCTTCTCTCCTGTATGAATTCTCTGATGATTTCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTTTAAGGCTTCTCTCCTGTATGAATTCTCTGATGATTTCTAAG  500

seq1  ACTGCATTTGTTACTAAAGCATTTGTCACATTCCCTACATTTATTAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTGTTACTAAAGCATTTGTCACATTCCCTACATTTATTAGGTT  550

seq1  TCTCTCCTGTATGAATTCTCTGATGAATTATAAGATCATATTTGTGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGTATGAATTCTCTGATGAATTATAAGATCATATTTGTGAGTG  600

seq1  AAGCATTTGTCACATTCACTACATTGATAAG  631
      |||||||||||||||||||||||||||||||
seq2  AAGCATTTGTCACATTCACTACATTGATAAG  631

seq1: chr13_66846254_66847297
seq2: B6Ng01-040C16.g_69_1103 (reverse)

seq1  TAACATTAAAGAGGGATTTTTAGGAAACGAGAGTTTTGATTTGTGGCTTC  50
      ||||||  |||||| |||||   |||||||||| ||||| |||||   ||
seq2  TAACAT--AAGAGGAATTTT--AGAAACGAGAG-TTTGA-TTGTG--CTC  42

seq1  ATGCTGGGCTCAGGGAAACCACAGCACCCTTTCACCAATGATAGGCATTA  100
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  ATGCTGGGCTCAGGGAA--CACAGCACCCTTTCACCAATGATAGGCATTA  90

seq1  AATAACCCTGGGAGAAAAGCCAGAAACATAAGGGAAACACTGTTGTGCCC  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAA-CCTGGGAGAAAAGCCAGAAACATAAGGGAAACACTGTTGTGCCC  139

seq1  TCTTAATAGACAGCACATCTTCATCAGTGGCGAAATAGAGAAAAACCACA  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTAATAGACAGCACATCTCCATCAGTGGCGAAATAGAGAAAAACCACA  189

seq1  GTTGGATTAGTAC-AGGTTCTCTAGATAAACATATCTC-AAATATAGAAT  248
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GTTGGATTAGTACAAGGTTCTCTAGATAAACATATCTCAAAATATAGAAT  239

seq1  GAATCTCTCTATGTAGATAGAAAGGAAATTTAATAGAATGTCCCAATAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTCTATGTAGATAGAAAGGAAATTTAATAGAATGTCCCAATAAA  289

seq1  GGCTCTCAGCCAACAGAAATTAGAAAAATCAAGGACTGGTTGATTTCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCAGCCAACAGAAATTAGAAAAATCAAGGACTGGTTGATTTCCTG  339

seq1  CTGCGGGTTATTATAGCTGATGTACCAGAATTCTAAAGAAATAAGTACTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGTTATTATAGCTGATGTACCAGAATTCTAAAGAAATAAGTACTT  389

seq1  TTTAATGCTAGTTAGAAAAATCACACAAGCAAATCACCTTTGTTTTATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTAGTTAGAAAAATCACACAAGCAAATCACCTTTGTTTTATAA  439

seq1  AAAAGAATGGCACGTATAAAAAAAGTGAAAGAACTACCCTGTTCAATGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGGCACGTATAAAAAAAGTGAAAGAACTACCCTGTTCAATGTC  489

seq1  TTTCATATATGCGGGATGCCAAAAGAATCTATTGCCTAGATTAAAGGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATATGCGGGATGCCAAAAGAATCTATTGCCTAGATTAAAGGTGG  539

seq1  ATCTGAACATCTCAAAAGATCGAGATTAAGCAAGAGTTTCTCAATTCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACATCTCAAAAGATCGAGATTAAGCAAGAGTTTCTCAATTCAAA  589

seq1  GGTATAATTAAGAAATATTATATATTATTAAGAGATATCCCCCACAGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATTAAGAAATATTATATATTATTAAGAGATATCCCCCACAGTAA  639

seq1  GCAGGACTGGAGTTAGGATTAGGCGATCAGAGGGTTATGGTTAGGATTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTGGAGTTAGGATTAGGCGATCAGAGGGTTATGGTTAGGATTAG  689

seq1  GATAAGGGTGGTTAGGATTAGGGTTAGGGTGGTTAGGAAATTAAGGTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGGTGGTTAGGATTAGGGTTAGGGTGGTTAGGAAATTAAGGTGTG  739

seq1  AGGTTTAAGATAGGGTTAAAGGTTTAGGATAAATCAGGGTTAGGCTCAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAAGATAGGGTTAAAGGTTTAGGATAAATCAGGGTTAGGCTCAGG  789

seq1  GGTAGGCTTGAGGTGGCCACTATTATTCTTATATCCCATTGAATCTCTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCTTGAGGTGGCCACTATTATTCTTATATCCCATTGAATCTCTAG  839

seq1  GATCTCTATTACATAAAGAAGAAATATCAGGGTTAGGGTTAGACTCAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTATTACATAAAGAAGAAATATCAGGGTTAGGGTTAGACTCAGAG  889

seq1  TTAGGGCAAAGAATTTGCTGTGCTATGTAAAATTAGCTTCTCTCTTTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCAAAGAATTTGCTGTGCTATGTAAAATTAGCTTCTCTCTTTTCT  939

seq1  CTCATCTGCCTTCCTAGTCCTCTTTTTCATAGTATCAACATCTTCTTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGCCTTCCTAGTCCTCTTTTTCATAGTATCAACATCTTCTTTCC  989

seq1  TGCCACAACGAAAGTGGCAAGTGGGTTATCCAAGAACCTGGAATTC  1044
      |||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCCACAACGAAAGTGGCAAGTGGGTTATCCAAGAACCGGGAATTC  1035