BAC Information

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BAC

Clone NameB6Ng01-040O07
Chromosome13 (Build37)
Map Location 101,890,990 - 102,023,076
singlet/doubletdoublet
Overlap genenone
Upstream geneSmn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040O07.bB6Ng01-040O07.g
ACCDH867721DH867722
length1,088151
definitionDH867721|Mus musculus domesticus DNA, BAC clone: B6Ng01-040O07, 5' end.DH867722|Mus musculus domesticus DNA, BAC clone: B6Ng01-040O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,021,996 - 102,023,076)(101,890,990 - 101,891,140)
sequence
gaattctaataataaaagtcttcttcctaaaatgacggggagcacagcag
acttcggcacagcaggacaagtaagcaaatcacagaagtcgccatcatta
actagactttctccccgaatatgcaatgcactttgaaaagctttgtaaaa
aatctagtactttgttttaaagggactatttttatatttaagcactgagg
agccagaggagtatatcatctctggagttcaccacccgaggtatctgtca
atcatcgcatctcaccatgggtcctgttgaacactctcatttctgcatca
cgcggaccctaaacccatcactacaagaatgtatagaagaaagcctcagc
actaacttcagggtcatttcccttacaaccttcctggcctttctttcctt
agtgcctctctgtccacacttctccattgagtctgtcttattccagcttc
atcttgcgtgctaagctttgcccttgggactggcagagctgaagggaaag
ctcttgaatacaaggtttgctaataacagtggcagcacagaccactgtga
gccgaagtagccaagcaagaaaatctctcagcctggagatgttttccagc
acctgggaagtagggcttgtggataaacaaaaatagacgtcaaaaccgac
tggctactcatagcttctgttgtccataaagactttgaggatctagagcc
aaaggccttttctagatgccctccaacctagcagagaacgttggctctgc
agctggtactaaatcaaaagaagccgtgtttcagtctgaatcagaatcat
gcattctttcttccatggatttccaatcgttccatcaggtctctagtggc
ctataacagtatctcctaggagtaacttatcaaagtcggtgatgagctcc
ttgtcagagaatggcgcttgcctctgcatcccctgagcctcccgggtttc
cactctggactgacaaggcttcccacatgagagagcctctcctgcttcag
tcttgaaagatctcctttcccatctagaatggttttttttggttgttttt
gttttatatttggtttttggtttttgggggttttttgg
aataatttcaatataaatgtctactttgttgtataaagttgaatacattt
ttaaatctattgctagataattaagaacatatctctctctgatgccacct
ctctttcttggtgtatgcacatgattcttaagatacactcgtgtgtgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_102021996_102023076
seq2: B6Ng01-040O07.b_46_1133 (reverse)

seq1  ----------CCAAAAAACCAAAAAACAAAAATAAAAACAAAAACAAACA  40
                || |||||||||||| |||| || ||||||||||| ||| 
seq2  CCAAAAAACCCCCAAAAACCAAAAACCAAATAT-AAAACAAAAAC-AACC  48

seq1  AAAAAAAACCATTCTATGATGAGAAAGGAGATCTTTCCAAGACTG-AGCA  89
      |||||||||||||||| |||| |||||||||||||| |||||||| ||||
seq2  AAAAAAAACCATTCTA-GATGGGAAAGGAGATCTTT-CAAGACTGAAGCA  96

seq1  GGAGAGGCTCTCTCATGTGGGAAGCCTTGTCAGTCCAGAGTGGAAACCCG  139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGCTCTCTCATGTGGGAAGCCTTGTCAGTCCAGAGTGGAAACCCG  146

seq1  GGAGGCTCAGGGGATGCAGAGGCAAGCGCCATTCTCTGACAAGGAGCTCA  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCAGGGGATGCAGAGGCAAGCGCCATTCTCTGACAAGGAGCTCA  196

seq1  TCACCGACTTTGATAAGTTACTCCTAGGAGATACTGTTATAGGCCACTAG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGACTTTGATAAGTTACTCCTAGGAGATACTGTTATAGGCCACTAG  246

seq1  AGACCTGATGGAACGATTGGAAATCCATGGAAGAAAGAATGCATGATTCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGATGGAACGATTGGAAATCCATGGAAGAAAGAATGCATGATTCT  296

seq1  GATTCAGACTGAAACACGGCTTCTTTTGATTTAGTACCAGCTGCAGAGCC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGACTGAAACACGGCTTCTTTTGATTTAGTACCAGCTGCAGAGCC  346

seq1  AACGTTCTCTGCTAGGTTGGAGGGCATCTAGAAAAGGCCTTTGGCTCTAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCTCTGCTAGGTTGGAGGGCATCTAGAAAAGGCCTTTGGCTCTAG  396

seq1  ATCCTCAAAGTCTTTATGGACAACAGAAGCTATGAGTAGCCAGTCGGTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAAGTCTTTATGGACAACAGAAGCTATGAGTAGCCAGTCGGTTT  446

seq1  TGACGTCTATTTTTGTTTATCCACAAGCCCTACTTCCCAGGTGCTGGAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCTATTTTTGTTTATCCACAAGCCCTACTTCCCAGGTGCTGGAAA  496

seq1  ACATCTCCAGGCTGAGAGATTTTCTTGCTTGGCTACTTCGGCTCACAGTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCAGGCTGAGAGATTTTCTTGCTTGGCTACTTCGGCTCACAGTG  546

seq1  GTCTGTGCTGCCACTGTTATTAGCAAACCTTGTATTCAAGAGCTTTCCCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCTGCCACTGTTATTAGCAAACCTTGTATTCAAGAGCTTTCCCT  596

seq1  TCAGCTCTGCCAGTCCCAAGGGCAAAGCTTAGCACGCAAGATGAAGCTGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTGCCAGTCCCAAGGGCAAAGCTTAGCACGCAAGATGAAGCTGG  646

seq1  AATAAGACAGACTCAATGGAGAAGTGTGGACAGAGAGGCACTAAGGAAAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACAGACTCAATGGAGAAGTGTGGACAGAGAGGCACTAAGGAAAG  696

seq1  AAAGGCCAGGAAGGTTGTAAGGGAAATGACCCTGAAGTTAGTGCTGAGGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGGAAGGTTGTAAGGGAAATGACCCTGAAGTTAGTGCTGAGGC  746

seq1  TTTCTTCTATACATTCTTGTAGTGATGGGTTTAGGGTCCGCGTGATGCAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTATACATTCTTGTAGTGATGGGTTTAGGGTCCGCGTGATGCAG  796

seq1  AAATGAGAGTGTTCAACAGGACCCATGGTGAGATGCGATGATTGACAGAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAGTGTTCAACAGGACCCATGGTGAGATGCGATGATTGACAGAT  846

seq1  ACCTCGGGTGGTGAACTCCAGAGATGATATACTCCTCTGGCTCCTCAGTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGGTGGTGAACTCCAGAGATGATATACTCCTCTGGCTCCTCAGTG  896

seq1  CTTAAATATAAAAATAGTCCCTTTAAAACAAAGTACTAGATTTTTTACAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATATAAAAATAGTCCCTTTAAAACAAAGTACTAGATTTTTTACAA  946

seq1  AGCTTTTCAAAGTGCATTGCATATTCGGGGAGAAAGTCTAGTTAATGATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCAAAGTGCATTGCATATTCGGGGAGAAAGTCTAGTTAATGATG  996

seq1  GCGACTTCTGTGATTTGCTTACTTGTCCTGCTGTGCCGAAGTCTGCTGTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTTCTGTGATTTGCTTACTTGTCCTGCTGTGCCGAAGTCTGCTGTG  1046

seq1  CTCCCCGTCATTTTAGGAAGAAGACTTTTATTATTAGAATTC  1081
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCGTCATTTTAGGAAGAAGACTTTTATTATTAGAATTC  1088

seq1: chr13_101890990_101891140
seq2: B6Ng01-040O07.g_74_224

seq1  AATAATTTCAATATAAATGTCTACTTTGTTGTATAAAGTTGAATACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCAATATAAATGTCTACTTTGTTGTATAAAGTTGAATACATTT  50

seq1  TTAAATCTATTGCTAGATAATTAAGAACATATCTCTCTCTGATGCCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTATTGCTAGATAATTAAGAACATATCTCTCTCTGATGCCACCT  100

seq1  CTCTTTCTTGGTGTATGCACATGATTCTTAAGATACACTCGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTGGTGTATGCACATGATTCTTAAGATACACTCGTGTGTGTGT  150

seq1  G  151
      |
seq2  G  151