BAC Information

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BAC

Clone NameB6Ng01-041P22
Chromosome13 (Build37)
Map Location 99,531,446 - 99,680,378
singlet/doubletdoublet
Overlap geneFcho2, Tnpo1, EG432798
Upstream geneRgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675
Downstream geneLOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b, Cartpt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041P22.bB6Ng01-041P22.g
ACCDH868497DH868498
length1,0601,028
definitionDH868497|Mus musculus domesticus DNA, BAC clone: B6Ng01-041P22, 5' end.DH868498|Mus musculus domesticus DNA, BAC clone: B6Ng01-041P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,679,315 - 99,680,378)(99,531,446 - 99,532,466)
sequence
gaattcctgtaaaggtagtgaagttttctagaatcttgttttagcctaaa
tatagaactgaatcaaaaggctagaatagtatttccatgtcagaaataca
tgtatttaacaacagtgacggaggggcaaaataaaggagaaggcatgaaa
aggagagcactcgaggattctaacttacctcatatcacacacacacacac
acacatagacaatacatacatacatacatatccagagttaaaacgatgca
tgcattttgttaaatctacatgctagagatggttgctgctggcagttgtt
tttaactgaaggatcgatcacctcacaacgacttctgcagattgagtgtc
catgcccccgcccttctctagggaaaggtttaggaattttataagaagtg
cagctcttgctgagataggaacggtgagtcctttgaggcattgcctcaca
cacgggtgacttccttggtggctgtccttccgtgtggcagttttactagt
acatggcagtatcttaaagacgtagggaactgctgcaaggtgcttacagt
gctgtttgttttggaagtcaattaaattgtgggctgtaagtgcgtgtagt
ctccagtgcttatccactcagagtgatgcagacactcgcattatgcctca
cttctctgctaccccttcttaccaaaccagcttcactcagcccagcccag
ccacagcacgttttcaattgtgagcactgtcatttgctgttttctgaagg
tttttaaaaataactgaattcagtgttctatgaactgtttctcagcaagt
gctgctccatttactccttcaggcgagcaccgctcacagttgaaggggag
tgcatttagtttcttgtagtgcgtcactacatacgtttcccatagataat
gtagttataattcgttaaatctgttccacttactattacacgagtctcaa
acccagtgtagagtcacaggctttcttttctgggtagcttttgtttggtt
ttgggagttttggtttttttttttttgtttttttgttttttttttgagac
agggtttctc
gaattccaagacagcctgggctatacagagaaaccctgtctcggggggta
aaaaaaagagggcatcagatcccactacagatggttgtgagccaccatgt
ggttgctgggaattgaactcaggacctctggaagagcagtcagtgctctt
aaccactgagccatctctcctcccccccccccccattttaaaaagatttg
ggttctgttaatatttgtgtgtatctgtgtgtgcctgcatcagtttatgt
gtaccatgtgctcatagatgcaggaggatgtctaagagcatctgagttag
acagtcttgagtttcctgatggggggggtgggaaccaaatgctggtcttt
gcaagagtagtacatactttcaaccactgagccattctccagcctcaatt
tctaaataaatttattaataaaccacagctttcttacttgaaaagtgaaa
gagaaaacaaaaatactagtttatctaagttacataatacagcatcttac
aaaatactttcacttctttattttgttgcactacaccatttaagatgaaa
gtgtctcaaagcaaaaacaaaaacaaaacaaaacaaaacaaacaaaaaaa
ccccacaaaaagcagtatttaaaactcctacactaaatgaacacaattag
tgtctaatagaaatagatgcttgcacactatttacagcatttggtaaatt
ttcctcctgcactgtacgcactgggacctcagttttggaatcatcttgcg
actcctcataaacaccaagaacagaacaaacctcacaacacagagcggcg
accattacttgctgctataatttctaaatgtctgaaatgagaaccaaaca
catgaaacagattatatctttggagtcagaaggtgggaagggacatcttt
aatcctagcactctgcaggcagaggcaggcttagtctatggtcagcctgg
tctacagattgagctccaggagaacgagatctactagagaaaccttcttg
gaaaattaaaaaatcaaacaagcttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_99679315_99680378
seq2: B6Ng01-041P22.b_48_1107 (reverse)

seq1  GAGAAACCCTGTCTCAAAAAAAAAAACAAAAAAACAAAAAAAAAAAAAAC  50
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  GAGAAACCCTGTCTC-AAAAAAAAAACAAAAAAAC-AAAAAAAAAAAAAC  48

seq1  CAAAACTCCCAAAACCAGACAAAAGCTACCCAGAAAAGAAAGCCTGTGAC  100
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAAAACTCCCAAAACCAAACAAAAGCTACCCAGAAAAGAAAGCCTGTGAC  98

seq1  TCTACACTGGGTTTTGAGACTCGTGTAATAGTAAGTGGAACAGATTTTAA  150
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TCTACACTGGG-TTTGAGACTCGTGTAATAGTAAGTGGAACAGA-TTTAA  146

seq1  CGAATTATAACTACATTATCTATGGGAAACGTATGTAGTGACGCACTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTATAACTACATTATCTATGGGAAACGTATGTAGTGACGCACTACA  196

seq1  AGAAACTAAATGCACTCCCCTTCAACTGTGAGCGGTGCTCGCCTGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAAATGCACTCCCCTTCAACTGTGAGCGGTGCTCGCCTGAAGGA  246

seq1  GTAAATGGAGCAGCACTTGCTGAGAAACAGTTCATAGAACACTGAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGAGCAGCACTTGCTGAGAAACAGTTCATAGAACACTGAATTCA  296

seq1  GTTATTTTTAAAAACCTTCAGAAAACAGCAAATGACAGTGCTCACAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTAAAAACCTTCAGAAAACAGCAAATGACAGTGCTCACAATTG  346

seq1  AAAACGTGCTGTGGCTGGGCTGGGCTGAGTGAAGCTGGTTTGGTAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGCTGTGGCTGGGCTGGGCTGAGTGAAGCTGGTTTGGTAAGAAG  396

seq1  GGGTAGCAGAGAAGTGAGGCATAATGCGAGTGTCTGCATCACTCTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCAGAGAAGTGAGGCATAATGCGAGTGTCTGCATCACTCTGAGTG  446

seq1  GATAAGCACTGGAGACTACACGCACTTACAGCCCACAATTTAATTGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCACTGGAGACTACACGCACTTACAGCCCACAATTTAATTGACTT  496

seq1  CCAAAACAAACAGCACTGTAAGCACCTTGCAGCAGTTCCCTACGTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAAACAGCACTGTAAGCACCTTGCAGCAGTTCCCTACGTCTTTA  546

seq1  AGATACTGCCATGTACTAGTAAAACTGCCACACGGAAGGACAGCCACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGCCATGTACTAGTAAAACTGCCACACGGAAGGACAGCCACCAA  596

seq1  GGAAGTCACCCGTGTGTGAGGCAATGCCTCAAAGGACTCACCGTTCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACCCGTGTGTGAGGCAATGCCTCAAAGGACTCACCGTTCCTAT  646

seq1  CTCAGCAAGAGCTGCACTTCTTATAAAATTCCTAAACCTTTCCCTAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAGAGCTGCACTTCTTATAAAATTCCTAAACCTTTCCCTAGAGA  696

seq1  AGGGCGGGGGCATGGACACTCAATCTGCAGAAGTCGTTGTGAGGTGATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGGGGCATGGACACTCAATCTGCAGAAGTCGTTGTGAGGTGATCG  746

seq1  ATCCTTCAGTTAAAAACAACTGCCAGCAGCAACCATCTCTAGCATGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAGTTAAAAACAACTGCCAGCAGCAACCATCTCTAGCATGTAGA  796

seq1  TTTAACAAAATGCATGCATCGTTTTAACTCTGGATATGTATGTATGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAAAATGCATGCATCGTTTTAACTCTGGATATGTATGTATGTATG  846

seq1  TATTGTCTATGTGTGTGTGTGTGTGTGTGATATGAGGTAAGTTAGAATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTATGTGTGTGTGTGTGTGTGTGATATGAGGTAAGTTAGAATCC  896

seq1  TCGAGTGCTCTCCTTTTCATGCCTTCTCCTTTATTTTGCCCCTCCGTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGCTCTCCTTTTCATGCCTTCTCCTTTATTTTGCCCCTCCGTCAC  946

seq1  TGTTGTTAAATACATGTATTTCTGACATGGAAATACTATTCTAGCCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAAATACATGTATTTCTGACATGGAAATACTATTCTAGCCTTTT  996

seq1  GATTCAGTTCTATATTTAGGCTAAAACAAGATTCTAGAAAACTTCACTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTTCTATATTTAGGCTAAAACAAGATTCTAGAAAACTTCACTAC  1046

seq1  CTTTACAGGAATTC  1064
      ||||||||||||||
seq2  CTTTACAGGAATTC  1060

seq1: chr13_99531446_99532466
seq2: B6Ng01-041P22.g_69_1091

seq1  GAATTCCAAGACAGCCTGGGCTATACAGAGAAACCCTGTCTCGGGGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAGCCTGGGCTATACAGAGAAACCCTGTCTCGGGGGGTA  50

seq1  AAAAAAAGAGGGCATCAGATCCCACTACAGATGGTTGTGAGCCACCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAGGGCATCAGATCCCACTACAGATGGTTGTGAGCCACCATGT  100

seq1  GGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTT  150

seq1  AACCACTGAGCCATCTCTCCTCCCCCCCCCCCCCATTTTAAAAAGATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGAGCCATCTCTCCTCCCCCCCCCCCCCATTTTAAAAAGATTTG  200

seq1  GGTTCTGTTAATATTTGTGTGTATCTGTGTGTGCCTGCATCAGTTTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTTAATATTTGTGTGTATCTGTGTGTGCCTGCATCAGTTTATGT  250

seq1  GTACCATGTGCTCATAGATGCAGGAGGATGTCTAAGAGCATCTGAGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATGTGCTCATAGATGCAGGAGGATGTCTAAGAGCATCTGAGTTAG  300

seq1  ACAGTCTTGAGTTTCCTGATGGGGGGGGTGGGAACCAAATGCTGGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTGAGTTTCCTGATGGGGGGGGTGGGAACCAAATGCTGGTCTTT  350

seq1  GCAAGAGTAGTACATACTTTCAACCACTGAGCCATTCTCCAGCCTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTAGTACATACTTTCAACCACTGAGCCATTCTCCAGCCTCAATT  400

seq1  TCTAAATAAATTTATTAATAAACCACAGCTTTCTTACTTGAAAACTGAAA  450
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTAAATAAATTTATTAATAAACCACAGCTTTCTTACTTGAAAAGTGAAA  450

seq1  GAGAAAACAAAAATACTAGTTTATCTAAGTTACATAATACAGCATCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACAAAAATACTAGTTTATCTAAGTTACATAATACAGCATCTTAC  500

seq1  AAAATACTTTCACTTCTTTATTTTGTTGCACTACACCATTTAAGATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTTCACTTCTTTATTTTGTTGCACTACACCATTTAAGATGAAA  550

seq1  GTGTCTCAAAGCAAAAAC-AAAACAAAACAAAACAAAACAAACAAAAAAA  599
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTCTCAAAGCAAAAACAAAAACAAAACAAAACAAAACAAACAAAAAAA  600

seq1  CCCCAC-AAAAGCAGTATTT-AAACTCCTACACT-AATGAACACAATTAG  646
      |||||| ||||||||||||| ||||||||||||| |||||||||||||||
seq2  CCCCACAAAAAGCAGTATTTAAAACTCCTACACTAAATGAACACAATTAG  650

seq1  TGTCTAATAGAAATAGATGCTTGCACACTATTTACAGCATTTGGTAAA-T  695
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTCTAATAGAAATAGATGCTTGCACACTATTTACAGCATTTGGTAAATT  700

seq1  TTCCTCCTGCACTGTACGCACTGGGACCTCAG-TTTGGAATCATC-TGCG  743
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TTCCTCCTGCACTGTACGCACTGGGACCTCAGTTTTGGAATCATCTTGCG  750

seq1  ACTCCTCATAAACACCAAGAACAGAAACAAACCTCACAACACAGAGCGGC  793
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTCCTCATAAACACCAAGAACAG-AACAAACCTCACAACACAGAGCGGC  799

seq1  GACCATTACTTGCTGCTATAATTTCTAAAATGTCTGAAATGAGAACCAAA  843
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACCATTACTTGCTGCTATAATTTCT-AAATGTCTGAAATGAGAACCAAA  848

seq1  CACATG-AACAGATAATATCTTTGGAGCCAGAAGGTGGGAAGGCACATCT  892
      |||||| ||||||| |||||||||||| ||||||||||||||| ||||||
seq2  CACATGAAACAGATTATATCTTTGGAGTCAGAAGGTGGGAAGGGACATCT  898

seq1  TTAATCCTAGCACTCTGCAGGCAGAGGCAGGCTGAGTTCTA-GGTCAGCC  941
      ||||||||||||||||||||||||||||||||| || |||| ||||||||
seq2  TTAATCCTAGCACTCTGCAGGCAGAGGCAGGCTTAG-TCTATGGTCAGCC  947

seq1  TGGTCTACAGAGTGAGCTCCAGGAGAACGAGAACTACAAAGAGAAAACCC  991
      ||||||||||| |||||||||||||||||||| ||||  |||||||  ||
seq2  TGGTCTACAGATTGAGCTCCAGGAGAACGAGATCTAC-TAGAGAAA--CC  994

seq1  ATCTTGAAAAATTAAAAAAACAAAACAAGC  1021
       ||||| |||||||||||| | ||||||||
seq2  TTCTTGGAAAATTAAAAAATC-AAACAAGC  1023