BAC Information

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BAC

Clone NameB6Ng01-042D02
Chromosome13 (Build37)
Map Location 24,385,273 - 24,485,279
singlet/doubletdoublet
Overlap geneLOC100042017
Upstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
Downstream geneCmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042D02.bB6Ng01-042D02.g
ACCDH868639DH868640
length1,1501,113
definitionDH868639|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D02, 5' end.DH868640|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,385,273 - 24,386,433)(24,484,151 - 24,485,279)
sequence
gaattcatctctattattctaccatgactgtctctttaattgggtgtcag
aatacgtggcccattcagcctgctagggcttcagtagtcagggcttctgc
cctaaaactcccaattatgacaccatatgcaaagggggagggattcagag
aaatctacttccaaatatagccccaaaccactctaatgagttgccaaaaa
tcagcaacaaggtttataacctgagacaatgactaaaggactcctccgct
aagttttcaagacgggattctgtgtagcacaagctctctagggagccaag
gatgatctgaaacctgtaccgtcccatatccaccggttgcaggccacctt
gcccaggtttatgtagtgcttcatatatgcagccaagcatcctactcagc
ttcattcccagaacttctctgctgggttattagtaaccttatatgaaaag
tctgtggcactgtgaactcaagtccacaggagaaaacgcatgcctacatg
gaagattctgccaggctgactaactacaacctcctgagcgtgcagagtta
ggatgttatagctctaaagcaaaatgtatattgagccatcagcaatccca
ctaacagtcgtttattaccttctttctgtactggacttaacattcttttg
actattggataaaatcttaggactattttcttagcagactactagcttcc
accaaccccctaactaacagcatcactagataacatcatacagatctaaa
atctatatagcaacaacatgtcctctttgctgttacctaccttcctgctg
tccctaccaaagcatttggtaagcagtctcttatgactttttgttgttgt
tctgtgatggtggaagttcatataaccatttctatgatctgaaaccaccc
aagtccctgtttccaggccatgctttattgtatttggctcagaataaact
ccctcttactctgcttgagggataacatgtttcacatcaacagctttgac
atctggggactggcaacaaaaggcacttgtttcccttctgtgactacttt
gcagtgctgatctgggtgtggacttcagagcgacatgctattgcttgttt
gtgaacgtgttgcagcagcgatgttcttggaagctctaacatgactttca

gaattcaccacagcacttaaaatggcatagaggaaacaacctggcagcaa
gccaggaaatcaaagcgcagtttttaacagcatctctagcaacagaagtg
cccatcaggatgaaagatggaaaataattcccctagagtttctccaggca
gtgcctggccccagcagttcccttatctgctctcagccaaactctgtcaa
actcttgcttctcgttttccacctagagtcatgtgactatttttaatatt
tgtttccgcttcttatgtcagagtctcactctgtagtccagggggccttc
aaactcatggtaccacctcagcttcagactccccagtgctgggataccag
gaataaattcccacgtggcatttttaaaaaaataagcatttatatttcat
ataggaaggttctctgatctcttgagtgtgcttttctggcttttgtttgt
ttggctttatataggcacacatttatgcagttaccttccacgccgaaaga
tgaaacagaggtctggagaaaggcctcagcagctgacagctgttgctgct
cctgcaaaggacctgtggttaggttctagttcccatgccagatggctcac
aaccaactgtaactccagctacggtgggtccaatgtcctcttccaacctc
cactgttgtgtgcatacctgtggcttttacacacagacacagtgacacag
acacagtgacacacacacacacatacacacacatcttttttctttaggtt
acagacaagttctggaaattaacacactcttccaattagctcccatgcag
aggatgaccattcttctaagcctgccactgtaaggtggtgatgcctggtt
cttgaattttacattactaatcactcagttgcatactctactgtctcatc
ttctccctgacataaatatggtgtttaacaatacagctaagctaagcaat
ggttgttctcttcatgttgttagcactatttattttacaaacacattttg
tttctctattcctctactgtagaaatttgagtcatttctgctttgactat
tatatagatatagcatctttggtgtgatgtttcagggcagaagtcccatt
tataatgagaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24385273_24386433
seq2: B6Ng01-042D02.b_45_1194

seq1  GAATTCATCTCTATTATTCTACCATGACTGTCTCTTTAATTGGGTGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTATTATTCTACCATGACTGTCTCTTTAATTGGGTGTCAG  50

seq1  AATACGTGGCCCATTCAGCCTGCTAGGGCTTCAGTAGTCAGGGCTTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTGGCCCATTCAGCCTGCTAGGGCTTCAGTAGTCAGGGCTTCTGC  100

seq1  CCTAAAACTCCCAATTATGACACCATATGCAAAGGGGGAGGGATTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACTCCCAATTATGACACCATATGCAAAGGGGGAGGGATTCAGAG  150

seq1  AAATCTACTTCCAAATATAGCCCCAAACCACTCTAATGAGTTGCCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACTTCCAAATATAGCCCCAAACCACTCTAATGAGTTGCCAAAAA  200

seq1  TCAGCAACAAGGTTTATAACCTGAGACAATGACTAAAGGACTCCTCCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAACAAGGTTTATAACCTGAGACAATGACTAAAGGACTCCTCCGCT  250

seq1  AAGTTTTCAAGACGGGATTCTGTGTAGCACAAGCTCTCTAGGGAGCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCAAGACGGGATTCTGTGTAGCACAAGCTCTCTAGGGAGCCAAG  300

seq1  GATGATCTGAAACCTGTACCGTCCCATATCCACCGGTTGCAGGCCACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTGAAACCTGTACCGTCCCATATCCACCGGTTGCAGGCCACCTT  350

seq1  GCCCAGGTTTATGTAGTGCTTCATATATGCAGCCAAGCATCCTACTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTTTATGTAGTGCTTCATATATGCAGCCAAGCATCCTACTCAGC  400

seq1  TTCATTCCCAGAACTTCTCTGCTGGGTTATTAGTAACCTTATATGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCCAGAACTTCTCTGCTGGGTTATTAGTAACCTTATATGAAAAG  450

seq1  TCTGTGGCACTGTGAACTCAAGTCCACAGGAGAAAACGCATGCCTACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCACTGTGAACTCAAGTCCACAGGAGAAAACGCATGCCTACATG  500

seq1  GAAGATTCTGCCAGGCTGACTAACTACAACCTCCTGAGCGTGCAGAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCTGCCAGGCTGACTAACTACAACCTCCTGAGCGTGCAGAGTTA  550

seq1  GGATGTTATAGCTCTAAAGCAAAATGTATATTGAGCCATCAGCAATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTATAGCTCTAAAGCAAAATGTATATTGAGCCATCAGCAATCCCA  600

seq1  CTAACAGTCGTTTATTACCTTCTTTCTGTACTGGACTTAACATTCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTCGTTTATTACCTTCTTTCTGTACTGGACTTAACATTCTTTTG  650

seq1  ACTATTGGATAAAATCTTAGGACTATTTTCTTAGCAGACTACTAGCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGATAAAATCTTAGGACTATTTTCTTAGCAGACTACTAGCTTCC  700

seq1  ACCAACCCCCTAACTAACAGCATCACTAGATAACATCATACAGATCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCCCCTAACTAACAGCATCACTAGATAACATCATACAGATCTAAA  750

seq1  ATCTATATAGCAACAACATGTCCTCTTTGCTGTTACCTACCTTCCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATAGCAACAACATGTCCTCTTTGCTGTTACCTACCTTCCTGCTG  800

seq1  TCCCTACCAAAGCATTTGGTAAGCAGTCTCTTATGACTTTTTGTTGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACCAAAGCATTTGGTAAGCAGTCTCTTATGACTTTTTGTTGTTGT  850

seq1  TCTGTGATGGTGGAAGTTCATATAACCATTTCTATGATCTGAAACCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGGTGGAAGTTCATATAACCATTTCTATGATCTGAAACCACCC  900

seq1  AAGTCCCTGTTTCCAGGCCATGCTTTATTGTATTTGGCTCAGAATAAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGTTTCCAGGCCATGCTTTATTGTATTTGGCTCAGAATAAACT  950

seq1  CCCTCTTACTCTGCTTGAGGGGATAACAATGTTTCACATCAACAGCTTTG  1000
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  CCCTCTTACTCTGCTTGA-GGGATAAC-ATGTTTCACATCAACAGCTTTG  998

seq1  ACATCTGGGGACTGGGCAACAAAAGGCCACCTG-TTCCCCTCTGTTGACT  1049
      ||||||||||||| |||||||||||| ||| || ||||| |||| |||||
seq2  ACATCTGGGGACT-GGCAACAAAAGG-CACTTGTTTCCCTTCTG-TGACT  1045

seq1  ACTTGGCAAGTGCTGATCCTGGGTGTGGAACTTCAGAGCGACATGGCTAT  1099
      |||| || ||||||||| |||||||||| ||||||||||||||| |||||
seq2  ACTTTGC-AGTGCTGAT-CTGGGTGTGG-ACTTCAGAGCGACAT-GCTAT  1091

seq1  GCCTTG-TTGTGAAACGTG-TGCAGCCAGGCAGATGTTCTTGGAGGCCTC  1147
        |||| ||||| |||||| ||||| |||   |||||||||||| | |||
seq2  TGCTTGTTTGTG-AACGTGTTGCAG-CAG--CGATGTTCTTGGAAG-CTC  1136

seq1  TAACATGACATTCA  1161
      ||||||||| ||||
seq2  TAACATGACTTTCA  1150

seq1: chr13_24484151_24485279
seq2: B6Ng01-042D02.g_68_1180 (reverse)

seq1  AATTCTCAATATAAATGGGGACTTCTGCCCCCTGAAACATCACACACAAA  50
      |||||||| ||||||| ||||||||||  |||||||||||||||| ||||
seq2  AATTCTCATTATAAAT-GGGACTTCTG--CCCTGAAACATCACAC-CAAA  46

seq1  GATGCTAATATCTAATAATAATAGTCAAAAGCAAGAAATGACCTCAAATG  100
      |||||| |||||||   ||||||||| ||||| |||||||| ||||||| 
seq2  GATGCT-ATATCTA--TATAATAGTC-AAAGC-AGAAATGA-CTCAAATT  90

seq1  TCTAACAGTAGAGGAATAGAGAAACAAAATGTTGTTTGTAAAAATTAAAT  150
      ||| ||||||||||||||||||||||||||| |||||||||||  |||||
seq2  TCT-ACAGTAGAGGAATAGAGAAACAAAATG-TGTTTGTAAAA--TAAAT  136

seq1  AGTGCTAACCAACAATGAAGAGAACAACCATTGCTTAGCTTAGCTGTATT  200
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAA-CAAC-ATGAAGAGAACAACCATTGCTTAGCTTAGCTGTATT  184

seq1  GTTAAACACCATATTTATGTCAGGGAGAAGATGAGACAGTAGAGTATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACACCATATTTATGTCAGGGAGAAGATGAGACAGTAGAGTATGCA  234

seq1  ACTGAGTGATTAGTAATGTAAAATTCAAGAACCAGGCATCACCACCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGATTAGTAATGTAAAATTCAAGAACCAGGCATCACCACCTTAC  284

seq1  AGTGGCAGGCTTAGAAGAATGGTCATCCTCTGCATGGGAGCTAATTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGGCTTAGAAGAATGGTCATCCTCTGCATGGGAGCTAATTGGAA  334

seq1  GAGTGTGTTAATTTCCAGAACTTGTCTGTAACCTAAAGAAAAAAGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTTAATTTCCAGAACTTGTCTGTAACCTAAAGAAAAAAGATGTG  384

seq1  TGTGTATGTGTGTGTGTGTGTCACTGTGTCTGTGTCACTGTGTCTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTGTGTGTGTGTCACTGTGTCTGTGTCACTGTGTCTGTGTG  434

seq1  TAAAAGCCACAGGTATGCACACAACAGTGGAGGTTGGAAGAGGACATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCACAGGTATGCACACAACAGTGGAGGTTGGAAGAGGACATTGG  484

seq1  ACCCACCGTAGCTGGAGTTACAGTTGGTTGTGAGCCATCTGGCATGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCGTAGCTGGAGTTACAGTTGGTTGTGAGCCATCTGGCATGGGAA  534

seq1  CTAGAACCTAACCACAGGTCCTTTGCAGGAGCAGCAACAGCTGTCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCTAACCACAGGTCCTTTGCAGGAGCAGCAACAGCTGTCAGCTG  584

seq1  CTGAGGCCTTTCTCCAGACCTCTGTTTCATCTTTCGGCGTGGAAGGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCTTTCTCCAGACCTCTGTTTCATCTTTCGGCGTGGAAGGTAAC  634

seq1  TGCATAAATGTGTGCCTATATAAAGCCAAACAAACAAAAGCCAGAAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAATGTGTGCCTATATAAAGCCAAACAAACAAAAGCCAGAAAAGC  684

seq1  ACACTCAAGAGATCAGAGAACCTTCCTATATGAAATATAAATGCTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAAGAGATCAGAGAACCTTCCTATATGAAATATAAATGCTTATTT  734

seq1  TTTTAAAAATGCCACGTGGGAATTTATTCCTGGTATCCCAGCACTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATGCCACGTGGGAATTTATTCCTGGTATCCCAGCACTGGGGA  784

seq1  GTCTGAAGCTGAGGTGGTACCATGAGTTTGAAGGCCCCCTGGACTACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGCTGAGGTGGTACCATGAGTTTGAAGGCCCCCTGGACTACAGA  834

seq1  GTGAGACTCTGACATAAGAAGCGGAAACAAATATTAAAAATAGTCACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTCTGACATAAGAAGCGGAAACAAATATTAAAAATAGTCACATG  884

seq1  ACTCTAGGTGGAAAACGAGAAGCAAGAGTTTGACAGAGTTTGGCTGAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGTGGAAAACGAGAAGCAAGAGTTTGACAGAGTTTGGCTGAGAG  934

seq1  CAGATAAGGGAACTGCTGGGGCCAGGCACTGCCTGGAGAAACTCTAGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGGGAACTGCTGGGGCCAGGCACTGCCTGGAGAAACTCTAGGGG  984

seq1  AATTATTTTCCATCTTTCATCCTGATGGGCACTTCTGTTGCTAGAGATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTCCATCTTTCATCCTGATGGGCACTTCTGTTGCTAGAGATGC  1034

seq1  TGTTAAAAACTGCGCTTTGATTTCCTGGCTTGCTGCCAGGTTGTTTCCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAACTGCGCTTTGATTTCCTGGCTTGCTGCCAGGTTGTTTCCTC  1084

seq1  TATGCCATTTTAAGTGCTGTGGTGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  TATGCCATTTTAAGTGCTGTGGTGAATTC  1113