BAC Information

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BAC

Clone NameB6Ng01-042I21
Chromosome13 (Build37)
Map Location 90,857,504 - 90,858,556
singlet/doubletsinglet
Overlap genenone
Upstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
Downstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042I21.bB6Ng01-042I21.g
ACCDH868900DH868901
length1,1551,041
definitionDH868900|Mus musculus domesticus DNA, BAC clone: B6Ng01-042I21, 5' end.DH868901|Mus musculus domesticus DNA, BAC clone: B6Ng01-042I21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggattaccgaatggcagagaagcacctgaaataatc
acacccttaatcatcagggaaatgcaaatcaaaacaaccctgagattcca
cctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagat
gctggcatggatgtggagaaagaggaacactcctccattgttgcaagctt
gtacaaccactctggaaatcagtctggcagttcctcagaaaattggacat
agtactactggaggatccagcaatacctctcctgggcatatatctagaag
atgccccaactggtaagaaggacacatgctccactatgttcatagcagcc
ttatttataatagccagaagctggaaagaacccagatgcccctcaacaga
ggaatggatacagaaaatgtggtacatctacacaatggagtactactcag
ctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctg
gagggcatcatcctgagtgaggtaacacattcacaaaggaactcacacaa
tatgtactcactgataagtggatattagccccaaacctaggatacccaag
atatgagatacaatttgctaaacacatgaaactcaagaaaaatgaagact
gaagtgtggacactatgcccctccttagaagtgggaacaaaacacccatg
gaaggagttacagagacaaagtttggagctgagatgaaaggatggaccat
gtagagactgccatatccagggatcaccccataatcagcatccaaacgct
gacaccattgcatacactagcaagattttatagaaaggacccagatgtag
ctgtctcttgtgagactatgccggggcctagcaaacacagaagtggatgc
tcacagtcagctaatggatggatcacagggctcccaatggagagctagag
aaagtacccaggagctaaagggatctgcaaccctatagtggacacattat
gactaaccagtaccccggagctcttgactctagctgcatattgtatcaaa
agatgggctagtcgcatcactgggaaaagaaggcccattgaaactcaact
ttaatggcccagtacaggggaacgctcaggtccaaagtgaatcctgttaa
gcaat
gaattcttttaaggaaagccctttctcctctattgttagctattgtaaaa
atggaaggttccccctgttggtgtcatggaactctgacccctagcaaaag
aaaacagaatagaaaatctaactagccttgtatctattaaagaaattgaa
tttgtaatggaaaaccttcctataaagaaaaggaagtaggacatgacttg
atgagttttcattttgttttcacaaactggcttgtgtgctctcgcagttc
aactgaattctggagcaaaataaaggtctgaatggagggcacttcacaga
caggaggcaccggctgtggcacctttacagaagtgcttaatccagattta
gctttcagatgttattatggttaaacaaaggattcttttttgatatatat
tttagtaaattgacaagtcactttatagtatgaaatactgtttaagtatt
ctacaaaatatatgtataatgcaaagaaaaaaatacagccagtggaatgt
tgggttcttgaactctatgtcttgctgcacataaagtttggtgaaggctg
gccttgtctggtctggctgcctattacagttcatctgcattgtcagcttg
actggacttagtgccacccaggagatgcacctctaggtgtgcctgtgaag
gcatttctagagagggttatctgaggagggaagatctacccaaaagtgga
gtacacggtccctttggagagagtgagatatataccagcatttttgtcga
tttgcttcaagatggtggacataacataaccagctgcctcataggcctcc
actgaagaatgactcaccttcattccttacatttctcaccatgatggact
gcagctttatgatgtgcatcaaaatgagccccctgaacttgcttcttcct
ccctccctgcttccttccctcccttcctgccactctccctcacccttctt
cttctttctgtctttctgtctttctgcggccgtctttctttggttcttct
ttcttctcttcttcgcgacgctgcgcttcctccttcctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90857504_90858556
seq2: B6Ng01-042I21.g_75_1108 (reverse)

seq1  GAAAGGAAGGAAGGAAGACAGACAGACAGACAGACAGAAAGAAAGAAAGA  50
      |||||||||| ||||||         |  |  | |   |||||   ||||
seq2  GAAAGGAAGG-AGGAAG---------CGCAGCGTCGCGAAGAAGAGAAGA  40

seq1  AAGAAAGAAAGAAACAAAGAAAGACAGACAGACAGAAAGACAGAAAGACA  100
      |||     ||||| ||||||||||| | |   ||||||||||||||||||
seq2  AAG-----AAGAACCAAAGAAAGACGGCC--GCAGAAAGACAGAAAGACA  83

seq1  GAAAGAAAGAAGAAAGGGTGAGGGAGAGTGGCAGGAAGGGAGGGAAGGAA  150
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAAG-AAGAAG-AAGGGTGAGGGAGAGTGGCAGGAAGGGAGGGAAGGAA  131

seq1  GCAGGGAGGGAGGAAGAAGCAAGTTCAGGGGGCTCATTTTGATGCACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGGGAGGAAGAAGCAAGTTCAGGGGGCTCATTTTGATGCACATC  181

seq1  ATAAAGCTGCAGTCCATCATGGTGAGAAATGTAAGGAATGAAGGTGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTGCAGTCCATCATGGTGAGAAATGTAAGGAATGAAGGTGAGTC  231

seq1  ATTCTTCAGTGGAGGCCTATGAGGCAGCTGGTTATGTTATGTCCACCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAGTGGAGGCCTATGAGGCAGCTGGTTATGTTATGTCCACCATC  281

seq1  TTGAAGCAAATCGACAAAAATGCTGGTATATATCTCACTCTCTCCAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAAATCGACAAAAATGCTGGTATATATCTCACTCTCTCCAAAGG  331

seq1  GACCGTGTACTCCACTTTTGGGTAGATCTTCCCTCCTCAGATAACCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTGTACTCCACTTTTGGGTAGATCTTCCCTCCTCAGATAACCCTCT  381

seq1  CTAGAAATGCCTTCACAGGCACACCTAGAGGTGCATCTCCTGGGTGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATGCCTTCACAGGCACACCTAGAGGTGCATCTCCTGGGTGGCAC  431

seq1  TAAGTCCAGTCAAGCTGACAATGCAGATGAACTGTAATAGGCAGCCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCAGTCAAGCTGACAATGCAGATGAACTGTAATAGGCAGCCAGAC  481

seq1  CAGACAAGGCCAGCCTTCACCAAACTTTATGTGCAGCAAGACATAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGCCAGCCTTCACCAAACTTTATGTGCAGCAAGACATAGAGTT  531

seq1  CAAGAACCCAACATTCCACTGGCTGTATTTTTTTCTTTGCATTATACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCAACATTCCACTGGCTGTATTTTTTTCTTTGCATTATACATA  581

seq1  TATTTTGTAGAATACTTAAACAGTATTTCATACTATAAAGTGACTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTAGAATACTTAAACAGTATTTCATACTATAAAGTGACTTGTCA  631

seq1  ATTTACTAAAATATATATCAAAAAAGAATCCTTTGTTTAACCATAATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAAAATATATATCAAAAAAGAATCCTTTGTTTAACCATAATAAC  681

seq1  ATCTGAAAGCTAAATCTGGATTAAGCACTTCTGTAAAGGTGCCACAGCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAGCTAAATCTGGATTAAGCACTTCTGTAAAGGTGCCACAGCCG  731

seq1  GTGCCTCCTGTCTGTGAAGTGCCCTCCATTCAGACCTTTATTTTGCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCTGTCTGTGAAGTGCCCTCCATTCAGACCTTTATTTTGCTCCA  781

seq1  GAATTCAGTTGAACTGCGAGAGCACACAAGCCAGTTTGTGAAAACAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGAACTGCGAGAGCACACAAGCCAGTTTGTGAAAACAAAAT  831

seq1  GAAAACTCATCAAGTCATGTCCTACTTCCTTTTCTTTATAGGAAGGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCATCAAGTCATGTCCTACTTCCTTTTCTTTATAGGAAGGTTTT  881

seq1  CCATTACAAATTCAATTTCTTTAATAGATACAAGGCTAGTTAGATTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAAATTCAATTTCTTTAATAGATACAAGGCTAGTTAGATTTTCT  931

seq1  ATTCTGTTTTCTTTTGCTAGGGGTCAGAGTTCCATGACACCAACAGGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTTCTTTTGCTAGGGGTCAGAGTTCCATGACACCAACAGGGGG  981

seq1  AACCTTCCATTTTTACAATAGCTAACAATAGAGGAGAAAGGGCTTTCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCATTTTTACAATAGCTAACAATAGAGGAGAAAGGGCTTTCCTT  1031

seq1  AAA  1053
      |||
seq2  AAA  1034