BAC Information

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BAC

Clone NameB6Ng01-043E02
Chromosome13 (Build37)
Map Location 23,973,976 - 24,098,990
singlet/doubletdoublet
Overlap geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Upstream geneV1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043E02.bB6Ng01-043E02.g
ACCDH869372DH869373
length9241,020
definitionDH869372|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E02, 5' end.DH869373|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,098,064 - 24,098,990)(23,973,976 - 23,974,533)
sequence
gaattcaggatccttctacctctgcttgctaactgccaggattacaggca
tgtttcaccaattccagcaaacactttaaagttttcctaatatcttcatt
cctcaaatgctgaatgagtggaaacagaaggttgactgtctatgctacaa
accatgttatttgtatcttggacagtgtaaatcacagctaagattgtaat
cagcacaggtattacaaacattattacagtcatccctatttcacaattac
agtacttagagactacactctgctatactgttaatgaatcagtaaagaat
tgcatccatttctgaattagtatgtgtatgtgtttgtatttgtgtttgtg
tatgtataatgtgcacattgtatgctattgataaactgtactctaggccc
cagctttaaaacattttaaattacatttcagcatagctgattgtctctgt
aagactcctctattttattcatgttgaatcttaattctaagcagttccta
agcttcacatgacaacccaaagaatgatggacaaatatgttaaggccaac
tcaaaaccctctacaggtccagtaggacagaaacacttatgttctctcag
atgtttctggagataagttggaaaggagtgtggttccttcttctgccttc
cacatatcagatattcccctgcaaatctttctcactgggttgcaaaggta
tgtcaaatttatgtcaacagctatttaggaggagacagtggttttcaaag
ttgaaacagggacacagacttcagaatattgccatattcatcccaaatgc
tctcagaggtagggtgagcctactctgtgtgcctgctacctctggacaga
caggagagaattacttttctatgtccaaaggagcactgaaggcatttgtc
ttcctagagatggcctcagaagat
gaattctgtagtttgaagtaattcccttctttttcccttgctttttttgt
ttgtttgtttgagttttttaaaataaaaaaaaaagcattgaccagacgaa
agtcttggagttttcctacagtgtttgttctctttctttcttcttctttt
tttaaatttcctcatcttttaaaaacttttatgttttatttgtagagaca
tagtttctctgtgttgctctggctatcctggaactcagagacctgcctgc
ctctgtcacccaagtgctcccattaaaggcatgcaccaccatggccagct
cctgtagtgcttctgtctcgtagttttatagtttcgagtcttcaattatt
tttgagtcaatgcactgtatattatatcaaaaagaagggcacaattctgt
tttcttctgtaaatagatatacattggttctaataggttccaatactatt
tattgttctttttctactttgtgttcttggcaattttattaaaaactaat
cctgccattatttcttgactctactttgcatccttggtcaatgtgtctgc
tttgatgtcaggaccagctccctttcactgccatgccttcgaggtgtatt
ttggagataggtagtgcagccctcctgctttgtactttgtccttggggtg
gctttgcccacctttgtgaggccatatctattttaacaattgctttttaa
ctttgtgaaaagtgttgtttgcattttcacagggcatgaatagagtttag
atcatttcgagaaacagacattttattaattttaattcttctgacccaag
aacatggggtgtgtttctcctctgcatgtgtttcgatccatcaatgtccc
atagattagattgcagctcatttcaactccttggttaaatttattcctaa
ctacttctttcctagttcttctaaaagggattattataattttttcttat
ttgtatagtaatgatttgaatagctttcttctgggagtgtgatacatgcc
tatccagttctggaggtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24098064_24098990
seq2: B6Ng01-043E02.b_43_966 (reverse)

seq1  ATCCTCTGAGGCCATCTCTAAGAAGACAGAATGCCTTCAGTGCTCCTTTG  50
      ||| |||||||||||||||| ||||||| |||||||||||||||||||||
seq2  ATCTTCTGAGGCCATCTCTAGGAAGACA-AATGCCTTCAGTGCTCCTTTG  49

seq1  GACATAGGAAAGTAATTTCTCTCCTGTCTGTCCAGAGGTAGCAGGCACAC  100
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  GACATAGAAAAGTAA-TTCTCTCCTGTCTGTCCAGAGGTAGCAGGCACAC  98

seq1  AGAGTCGGCTCACCCTACCTCCTGAGAGCATTTGGGATGAATATGGCAAT  150
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAGTAGGCTCACCCTACCT-CTGAGAGCATTTGGGATGAATATGGCAAT  147

seq1  ATTCTGAAGTCTGTGTCCCTGTTTCAACTTTGAAAACCACTGTCTCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAGTCTGTGTCCCTGTTTCAACTTTGAAAACCACTGTCTCCTCC  197

seq1  TAAATAGCTGTTGACATAAATTTGACATACCTTTGCAACCCAGTGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCTGTTGACATAAATTTGACATACCTTTGCAACCCAGTGAGAAA  247

seq1  GATTTGCAGGGGAATATCTGATATGTGGAAGGCAGAAGAAGGAACCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCAGGGGAATATCTGATATGTGGAAGGCAGAAGAAGGAACCACAC  297

seq1  TCCTTTCCAACTTATCTCCAGAAACATCTGAGAGAACATAAGTGTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCAACTTATCTCCAGAAACATCTGAGAGAACATAAGTGTTTCTG  347

seq1  TCCTACTGGACCTGTAGAGGGTTTTGAGTTGGCCTTAACATATTTGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGGACCTGTAGAGGGTTTTGAGTTGGCCTTAACATATTTGTCCA  397

seq1  TCATTCTTTGGGTTGTCATGTGAAGCTTAGGAACTGCTTAGAATTAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTGGGTTGTCATGTGAAGCTTAGGAACTGCTTAGAATTAAGAT  447

seq1  TCAACATGAATAAAATAGAGGAGTCTTACAGAGACAATCAGCTATGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGAATAAAATAGAGGAGTCTTACAGAGACAATCAGCTATGCTGA  497

seq1  AATGTAATTTAAAATGTTTTAAAGCTGGGGCCTAGAGTACAGTTTATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTTAAAATGTTTTAAAGCTGGGGCCTAGAGTACAGTTTATCAA  547

seq1  TAGCATACAATGTGCACATTATACATACACAAACACAAATACAAACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATACAATGTGCACATTATACATACACAAACACAAATACAAACACAT  597

seq1  ACACATACTAATTCAGAAATGGATGCAATTCTTTACTGATTCATTAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTAATTCAGAAATGGATGCAATTCTTTACTGATTCATTAACAG  647

seq1  TATAGCAGAGTGTAGTCTCTAAGTACTGTAATTGTGAAATAGGGATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGAGTGTAGTCTCTAAGTACTGTAATTGTGAAATAGGGATGACT  697

seq1  GTAATAATGTTTGTAATACCTGTGCTGATTACAATCTTAGCTGTGATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATGTTTGTAATACCTGTGCTGATTACAATCTTAGCTGTGATTTA  747

seq1  CACTGTCCAAGATACAAATAACATGGTTTGTAGCATAGACAGTCAACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCAAGATACAAATAACATGGTTTGTAGCATAGACAGTCAACCTT  797

seq1  CTGTTTCCACTCATTCAGCATTTGAGGAATGAAGATATTAGGAAAACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCACTCATTCAGCATTTGAGGAATGAAGATATTAGGAAAACTTT  847

seq1  AAAGTGTTTGCTGGAATTGGTGAAACATGCCTGTAATCCTGGCAGTTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTGCTGGAATTGGTGAAACATGCCTGTAATCCTGGCAGTTAGC  897

seq1  AAGCAGAGGTAGAAGGATCCTGAATTC  927
      |||||||||||||||||||||||||||
seq2  AAGCAGAGGTAGAAGGATCCTGAATTC  924

seq1: chr13_23973976_23974533
seq2: B6Ng01-043E02.g_538_1086

seq1  TGTTCTTGGCAATTTTATTAAAAACTAATCCTGCCATTATTTCTTGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGGCAATTTTATTAAAAACTAATCCTGCCATTATTTCTTGACTC  50

seq1  TACTTTGCATCCTTGGTCAATGTGTCTGCTTTGATGTCAGGACCAGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGCATCCTTGGTCAATGTGTCTGCTTTGATGTCAGGACCAGCTCC  100

seq1  CTTTCACTGCCATGCCTTCGAGGTGTATTTTGGAGATAGGTAGTGCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTGCCATGCCTTCGAGGTGTATTTTGGAGATAGGTAGTGCAGCC  150

seq1  CTCCTGCTTTGTACTTTGTCCTTGGGGTGGCTTTGCCCACCTTTGTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTTGTACTTTGTCCTTGGGGTGGCTTTGCCCACCTTTGTGAGG  200

seq1  CCATATCTATTTTAACAATTGCTTTTTAACTTTGTGAAAAGTGTTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTATTTTAACAATTGCTTTTTAACTTTGTGAAAAGTGTTGTTTG  250

seq1  CATTTTCACAGGGCATGAATAGAGTTTAGATCATTTCGAGAAACAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCACAGGGCATGAATAGAGTTTAGATCATTTCGAGAAACAGACAT  300

seq1  TTTATTAATTTTAATTCTTCTGACCCAAGAACATGGGGTGTGTTTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATTTTAATTCTTCTGACCCAAGAACATGGGGTGTGTTTCTCCT  350

seq1  CTGCATGTGTTTCGATCCATCAATGTCCCATAGATTTAGATTGCAGCTCA  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGCATGTGTTTCGATCCATCAATGTCCCATAGA-TTAGATTGCAGCTCA  399

seq1  -TTCAACTCCTTGGTTAAATTTATTCCTAACTACTTCTTTCCTAGTTCTT  449
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTCCTTGGTTAAATTTATTCCTAACTACTTCTTTCCTAGTTCTT  449

seq1  CTAAAAGGGGATTATTATAATTTTTTCTTAATTTGTTATTAAGTAATGAT  499
      |||||| |||||||||||||||||||||| ||||| |||  |||||||| 
seq2  CTAAAA-GGGATTATTATAATTTTTTCTT-ATTTG-TAT--AGTAATGA-  493

seq1  TTTGAATAGCTTTCTTTCTGGTAGTGTGATACATGCCTAATTCCAGTTCT  549
      |||||||||||||| |||||| |||||||||||||||||  |||||||||
seq2  TTTGAATAGCTTTC-TTCTGGGAGTGTGATACATGCCTA--TCCAGTTCT  540

seq1  GGAGGTGAG  558
      |||||||||
seq2  GGAGGTGAG  549