BAC Information

Click to search

BAC

Clone NameB6Ng01-044I16
Chromosome13 (Build37)
Map Location 118,461,720 - 118,621,673
singlet/doubletdoublet
Overlap geneHcn1
Upstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I16.bB6Ng01-044I16.g
ACCDH870264DH870265
length1,1261,151
definitionDH870264|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I16, 5' end.DH870265|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,620,525 - 118,621,673)(118,461,720 - 118,462,882)
sequence
gaattctatttaaatagaattgatcacctttatatatgaaatggtaaaat
aaccaaccaaatgccactaaattagctaattattataggcctatttaaac
catgtttctagagaatatcttcaataaataaaatactgatatcagttaca
gagcaggcatttcagtttcaggccatcaccataagccataccctcagcag
atttttttgtgaactagaaaatgcaaaggaaagaaggctataattattcc
aactttttttttatttcaaatttctatctgaattttctgaactgttttgt
gctagaaaaatccccggagcttcagttttctctatgtttacaaatgttta
attgacatacatataaatgcaggacttgatagatgcacccactgtactgg
taacaatctgctctatgggttctgtggcggttggtgggaatgatgcctta
tggcacggatctcctcattctcagctttcacttctaagagatattttgca
tctgtccagtcagctctaaacccaacacgtacaaccaacagtgaacccat
tatgtgaacttaatggacaacactgatgttccagatgttcctctctgctc
aaacatctgttgcatagagaagagagggaggcctgagctttataaaaaga
acatgttgtttttagggtttttttagaggtatagaagagacaaatgaaca
tattttataatggaatttattagagtggctacatgacaaggaaagggtac
cccaaaacgtctgtttccatgaacctgagaaccatccatctacaaggctg
gatgcctttcaagtctcaatctagagctatgcctgggggatttctggaag
ttagcacgtcctcagtgaacattggaaagttaaaaaaaaaaaagaaagaa
taagaaagaaaaagaaagaaaaaagcagttctcacatgagtacaggacag
catcaacagagtagaggacttgtgagcaagatgtgataacccaacaacca
aagtttttctatcaaacctccttgtattgggtctatgcttgaaagtgcca
ctcacaggcaatgtattctctcacttgagtatcaaataaaggaaaacatt
ttcagccatggtagctatcggatcta
gaattctatgactttaggggttagatttttctttcattaacactttgtat
gcttccctgttttatatttagacaagatgtgtatcatcatgaaccaaata
tatattgtctggtaatatgtggagacactacattgtcaaaaggccatggc
atgagatgacagaaagacatggcaataaagaaaggggggtgggaagggta
gcttgagaatataaatgctgtacgaatagctaaacccttatgcttagaga
caaaaaaagtgtgatcactgcctcaaacatgaccaaaataaggataaaat
tgtggccagaaactcgtggacagaggacagatcttatgcattctccaaat
ctctgagaactaaaggttcaagaaatgtcacattttcctaaagcttatct
catcacagtcagtcagtccaagatgccattgggatatacttcagcatacc
ctctactcctcctctatttcatctttgctaacatccccggactctcactc
tccatacatttccatataaccacaatcctggtttactgcattccctaaca
actacagattctcatattcattgtctactgggtcctacagagcatgcttg
agatcaataaaattcccattccctccaaccacccaattcttctttaaata
gcccattaaggtgtttttgttgttgttgttgttgctgtttttctctttca
aaccaaagtcacacttgaggtttctgtttcccctatagatcttgtaagtg
gtagcttctcctcttcctcttggctcgtctttggggcctgaaagtcatac
aaattcttaaaaccttgttcttagtttcagtctagtttcttctctcgatt
gcctttcccactcaactaatcatgtcctccagtcttcatgccccattgac
tgtattttaaaggagattggcagttttccactttttctcacctttgactt
gggttattgtaactttaagtaaatcttgtctttcccacttccattcctac
tcacttctggaattttcttctttctttctcctcttgttccctttcttctc
tctcccctctcctctctctctcccctctttttggaaaggacctatgcacc
agtctcatcttgaaattcctggtataacaaatgtcttgaacatggatttt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118620525_118621673
seq2: B6Ng01-044I16.b_44_1169 (reverse)

seq1  TAGATCCGATAAGCTTTAACCAGTGGGCCTGAGAAATGGTTTTTCTTTAT  50
      |||||||||| ||||   |||| |||  |||| |||| ||||| ||||||
seq2  TAGATCCGAT-AGCT---ACCA-TGG--CTGA-AAAT-GTTTTCCTTTAT  41

seq1  TATGATAACTCAAGTGTGGAGA-AATACACTGCCTGTGAGTGGCACTTTC  99
      | |||| ||||||||   |||| |||||| ||||||||||||||||||||
seq2  T-TGAT-ACTCAAGT---GAGAGAATACATTGCCTGTGAGTGGCACTTTC  86

seq1  CAGCATAGACCCAAATACAAGGAGGTTTGATAG-AAGACTTTGGTTTGTT  148
       ||||||||||| |||||||||||||||||||| || ||||||| |||||
seq2  AAGCATAGACCC-AATACAAGGAGGTTTGATAGAAAAACTTTGG-TTGTT  134

seq1  GGGTTATCACATCTTTGCTCACAAGTCCTCTACTCTGTTGATGCTGTCCT  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGTTATCACATC-TTGCTCACAAGTCCTCTACTCTGTTGATGCTGTCCT  183

seq1  GTACTCATGTGAGAACCTGCTTTTTTTTCTTTTCTTTTTTCTTTCTTTAT  248
      ||||||||||||||| ||||  ||||||||||   ||||||||||||   
seq2  GTACTCATGTGAGAA-CTGC--TTTTTTCTTT--CTTTTTCTTTCTT--A  226

seq1  TTCTTTCTTTTTTTTTTTTTAACTTTCCAATGTTCACTGAGGACCTGCTA  298
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTTTC-TTTTTTTTTTTTAACTTTCCAATGTTCACTGAGGACGTGCTA  275

seq1  ACTTCCAGAAATCCCCCAGGCATAGCTCTAGATTGAGACTTGAAAGGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGAAATCCCCCAGGCATAGCTCTAGATTGAGACTTGAAAGGCAT  325

seq1  CCAGCCTTGTAGATGGATGGTTCTCAGGTTCATGGAAACAGACGTTTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGTAGATGGATGGTTCTCAGGTTCATGGAAACAGACGTTTTGG  375

seq1  GGTACCCTTTCCTTGTCATGTAGCCACTCTAATAAATTCCATTATAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCTTTCCTTGTCATGTAGCCACTCTAATAAATTCCATTATAAAAT  425

seq1  ATGTTCATTTGTCTCTTCTATACCTCTAAAAAAACCCTAAAAACAACATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTTGTCTCTTCTATACCTCTAAAAAAACCCTAAAAACAACATG  475

seq1  TTCTTTTTATAAAGCTCAGGCCTCCCTCTCTTCTCTATGCAACAGATGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTATAAAGCTCAGGCCTCCCTCTCTTCTCTATGCAACAGATGTT  525

seq1  TGAGCAGAGAGGAACATCTGGAACATCAGTGTTGTCCATTAAGTTCACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAGAGGAACATCTGGAACATCAGTGTTGTCCATTAAGTTCACAT  575

seq1  AATGGGTTCACTGTTGGTTGTACGTGTTGGGTTTAGAGCTGACTGGACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTCACTGTTGGTTGTACGTGTTGGGTTTAGAGCTGACTGGACAG  625

seq1  ATGCAAAATATCTCTTAGAAGTGAAAGCTGAGAATGAGGAGATCCGTGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAATATCTCTTAGAAGTGAAAGCTGAGAATGAGGAGATCCGTGCC  675

seq1  ATAAGGCATCATTCCCACCAACCGCCACAGAACCCATAGAGCAGATTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCATCATTCCCACCAACCGCCACAGAACCCATAGAGCAGATTGTT  725

seq1  ACCAGTACAGTGGGTGCATCTATCAAGTCCTGCATTTATATGTATGTCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACAGTGGGTGCATCTATCAAGTCCTGCATTTATATGTATGTCAA  775

seq1  TTAAACATTTGTAAACATAGAGAAAACTGAAGCTCCGGGGATTTTTCTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTTGTAAACATAGAGAAAACTGAAGCTCCGGGGATTTTTCTAG  825

seq1  CACAAAACAGTTCAGAAAATTCAGATAGAAATTTGAAATAAAAAAAAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACAGTTCAGAAAATTCAGATAGAAATTTGAAATAAAAAAAAAGT  875

seq1  TGGAATAATTATAGCCTTCTTTCCTTTGCATTTTCTAGTTCACAAAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAATTATAGCCTTCTTTCCTTTGCATTTTCTAGTTCACAAAAAAA  925

seq1  TCTGCTGAGGGTATGGCTTATGGTGATGGCCTGAAACTGAAATGCCTGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAGGGTATGGCTTATGGTGATGGCCTGAAACTGAAATGCCTGCT  975

seq1  CTGTAACTGATATCAGTATTTTATTTATTGAAGATATTCTCTAGAAACAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTGATATCAGTATTTTATTTATTGAAGATATTCTCTAGAAACAT  1025

seq1  GGTTTAAATAGGCCTATAATAATTAGCTAATTTAGTGGCATTTGGTTGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAATAGGCCTATAATAATTAGCTAATTTAGTGGCATTTGGTTGGT  1075

seq1  TATTTTACCATTTCATATATAAAGGTGATCAATTCTATTTAAATAGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACCATTTCATATATAAAGGTGATCAATTCTATTTAAATAGAATT  1125

seq1  C  1149
      |
seq2  C  1126

seq1: chr13_118461720_118462882
seq2: B6Ng01-044I16.g_67_1217

seq1  GAATTCTATGACTTTAGGGGTTAGATTTTTCTTTCATTAACACTTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGACTTTAGGGGTTAGATTTTTCTTTCATTAACACTTTGTAT  50

seq1  GCTTCCCTGTTTTATATTTAGACAAGATGTGTATCATCATGAACCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTGTTTTATATTTAGACAAGATGTGTATCATCATGAACCAAATA  100

seq1  TATATTGTCTGGTAATATGTGGAGACACTACATTGTCAAAAGGCCATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTCTGGTAATATGTGGAGACACTACATTGTCAAAAGGCCATGGC  150

seq1  ATGAGATGACAGAAAGACATGGCAATAAAGAAAGGGGGGTGGGAAGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGACAGAAAGACATGGCAATAAAGAAAGGGGGGTGGGAAGGGTA  200

seq1  GCTTGAGAATATAAATGCTGTACGAATAGCTAAACCCTTATGCTTAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGAATATAAATGCTGTACGAATAGCTAAACCCTTATGCTTAGAGA  250

seq1  CAAAAAAAGTGTGATCACTGCCTCAAACATGACCAAAATAAGGATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGTGTGATCACTGCCTCAAACATGACCAAAATAAGGATAAAAT  300

seq1  TGTGGCCAGAAACTCGTGGACAGAGGACAGATCTTATGCATTCTCCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAGAAACTCGTGGACAGAGGACAGATCTTATGCATTCTCCAAAT  350

seq1  CTCTGAGAACTAAAGGTTCAAGAAATGTCACATTTTCCTAAAGCTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAACTAAAGGTTCAAGAAATGTCACATTTTCCTAAAGCTTATCT  400

seq1  CATCACAGTCAGTCAGTCCAAGATGCCATTGGGATATACTTCAGCATACC  450
      |||||||||||||||||||||                 ||||||||||||
seq2  CATCACAGTCAGTCAGTCCAANNNNNNNNNNNNNNNNNCTTCAGCATACC  450

seq1  CTCTACTCCTCCTCTATTTCATCTTTGCTAACATCCCCGGACTCTCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCCTCCTCTATTTCATCTTTGCTAACATCCCCGGACTCTCACTC  500

seq1  TCCATACATTTCCATATAACCACAATCCTGGTTTACTGCATTCCCTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACATTTCCATATAACCACAATCCTGGTTTACTGCATTCCCTAACA  550

seq1  ACTACAGATTCTCATATTCATTGTCTACTGGGTCCTACAGAGCATGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGATTCTCATATTCATTGTCTACTGGGTCCTACAGAGCATGCTTG  600

seq1  AGATCAATAAAATTCCCATTCCCTCCAACCACCCAATTCTTCTTTAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATAAAATTCCCATTCCCTCCAACCACCCAATTCTTCTTTAAATA  650

seq1  GCCCATTAAGGTGTTTTTGTTGTTGTTGTTGTTGCTGTTTTTCTCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTAAGGTGTTTTTGTTGTTGTTGTTGTTGCTGTTTTTCTCTTTCA  700

seq1  AACCAAAGTCACACTTGAGGTTTCTGTTTCCCCTATAGATCTTGTAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGTCACACTTGAGGTTTCTGTTTCCCCTATAGATCTTGTAAGTG  750

seq1  GTAGCTTCTCCTCTTCCTCTTGGCTCGTCTTTGGGGCCTGAAAGTCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTCTCCTCTTCCTCTTGGCTCGTCTTTGGGGCCTGAAAGTCATAC  800

seq1  AAATTCTTAAAACCTTGTTCTTAGTTTCAGTCTAGTTTCTTCTCTCGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTAAAACCTTGTTCTTAGTTTCAGTCTAGTTTCTTCTCTCGATT  850

seq1  GCCTTTCCCACTCAACTAATCATGTCCTCCAGTCTTCATGCCCCATTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCCACTCAACTAATCATGTCCTCCAGTCTTCATGCCCCATTGAC  900

seq1  TGTATTTTAAAGGAGATTGGCAGTCTTTCCACTTTTTCTCACCTTTGACT  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTATTTTAAAGGAGATTGGCAGT-TTTCCACTTTTTCTCACCTTTGACT  949

seq1  TGGGTTATTGTAACTTTAAGTAAATC-TGTCTTTCCCACTTCCATTCCTA  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGGTTATTGTAACTTTAAGTAAATCTTGTCTTTCCCACTTCCATTCCTA  999

seq1  CCTCACCTCTTGAATTTTTCTTCTTTCTTTCTTCCTCTTGTTCCCTTCCT  1049
       ||||| ||| ||| |||||||||||||||| ||||||||||||||| ||
seq2  -CTCACTTCTGGAA-TTTTCTTCTTTCTTTC-TCCTCTTGTTCCCTTTCT  1046

seq1  TCTCTCTCCCCTCTCCTCTCTTCTCTCCCTCTCTTTCTTGAAATGATCAT  1099
      |||||||||||||||||||| |||||||| |||||| | |||| || | |
seq2  TCTCTCTCCCCTCTCCTCTC-TCTCTCCC-CTCTTTTTGGAAAGGA-CCT  1093

seq1  ATGCAACACAGTCTCATCTTGAATTCACTGTATTAACCAAAATTGTCTTT  1149
      |||||   ||||||||||||||| |  |||   ||||   || |||| ||
seq2  ATGCA--CCAGTCTCATCTTGAAATTCCTGGTATAAC---AAATGTC-TT  1137

seq1  GAACATGGATTTTC  1163
      ||||||||||||||
seq2  GAACATGGATTTTC  1151