BAC Information

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BAC

Clone NameB6Ng01-047M12
Chromosome13 (Build37)Y (Build37)
Map Location 54,014,827 - 54,016,001573,321 - 573,356
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAuh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760, E130119H09Rik
Downstream geneDrd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M12.bB6Ng01-047M12.g
ACCDH872545DH872546
length1,144631
definitionDH872545|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M12, 5' end.DH872546|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,014,827 - 54,016,001)(573,321 - 573,356)
sequence
gaattccacccaaaatttcatacttggagagggaaatggctggagtttgg
tgctaaccagaaaaagaacttgtctcttggaaagagattttacagtttta
ccaacctgttggaccatctttctggaggaggctggagccaagaccttgat
gctgggtgaggacatgaactacatttatgcatgcctctgtccctttatgt
gaacctaaatctcatgtcagaaccccaaagacagacttgaggtgactaca
ggatgcttttgtgccccttttcagtgtgaccataccaaacaaaccttttt
gtacctttttctactaacttgtctcttcagttgactatcaaagatggtgg
cagagcctggcttgttagggcttccagaacacaggctctgactcatgaca
ggaccacttcatttctgttctgtgctagtcgacatatttacacaaattgg
ctccagtccaaggccacaactatctgaacagttagctttactaactgata
aggaaattctgaactatggaacttaatgttcattggcaaggctcagaagg
aacaggaaggctggagggagtgttggtgtcacattatcccacgttcttta
catgatccaaccactgccattaagaaaggagtaaacagtgcaaccctcat
tgaccataaatgaaagaatctcagagagcgtgtgactcaccaaaaggact
gggtagcaagcacacagcttcccctggaggaaatgctctttccttatata
agctaatctttaggatccagggatggtctgctgctgttacaaagccatac
cctgactcatcactgtctgctcaaacggctaaatgaaaggggagtgacag
tggacagtgacaaaggggacaggaaggctgagtgggagtgagaggtcgac
aatccagatcctggcagccacagggctgcttcctatcttgctctgctctg
agcagattgcaactggcagcctttttctcatgctctggctgtctacaaac
cggacaggagtgtattatttgctggtcgatgagactgttgtgtgagtgat
gactgtatagaccatagctgtgtctactactgcccatcttaggagaaatc
atctaaatctgatggcctctgccaccctctgaataacaatgctt
gaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggt
aaaacattcacaaaggaactcacacaatatgtactcactgataagtggat
attagcccaaaacctaggatacccaagatataagatacaatttcctaaac
acatgaaactcaataaaaatgaagactgaagtgtggacactatgcccctc
cttagaagtgggaacaaaacacccttggaaggagttacagagacaaagtt
tggagctgagatgaaaggatggaccatgtagagactgccatatccaggga
tccaccccataatcagcatccaaacgctgacaccattgcatacactagca
agattttatcaaaaggacccagatgtagctgtctcttgtgagactatgcc
ggggcctagcaaacacagaagtggatgctcacagtcagctaatggatgga
tcacagggctcccaatggaggagttagagaaagtacccaaggagctaaag
ggatctgcaaccctataggtggaacaacattatgaactaaccagtacccc
ggagctcttgactctagctgcatatgtatcaaaagatggcctaatcggcc
atcactggaaaaagaggcccattggacaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54014827_54016001
seq2: B6Ng01-047M12.b_42_1185

seq1  GAATTCCACCCAAAATTTCATACTTGGAGAGGGAAATGGCTGGAGTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCAAAATTTCATACTTGGAGAGGGAAATGGCTGGAGTTTGG  50

seq1  TGCTAACCAGAAAAAGAACTTGTCTCTTGGAAAGAGATTTTACAGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACCAGAAAAAGAACTTGTCTCTTGGAAAGAGATTTTACAGTTTTA  100

seq1  CCAACCTGTTGGACCATCTTTCTGGAGGAGGCTGGAGCCAAGACCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGTTGGACCATCTTTCTGGAGGAGGCTGGAGCCAAGACCTTGAT  150

seq1  GCTGGGTGAGGACATGAACTACATTTATGCATGCCTCTGTCCCTTTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGAGGACATGAACTACATTTATGCATGCCTCTGTCCCTTTATGT  200

seq1  GAACCTAAATCTCATGTCAGAACCCCAAAGACAGACTTGAGGTGACTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTAAATCTCATGTCAGAACCCCAAAGACAGACTTGAGGTGACTACA  250

seq1  GGATGCTTTTGTGCCCCTTTTCAGTGTGACCATACCAAACAAACCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTTTGTGCCCCTTTTCAGTGTGACCATACCAAACAAACCTTTTT  300

seq1  GTACCTTTTTCTACTAACTTGTCTCTTCAGTTGACTATCAAAGATGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTTTTCTACTAACTTGTCTCTTCAGTTGACTATCAAAGATGGTGG  350

seq1  CAGAGCCTGGCTTGTTAGGGCTTCCAGAACACAGGCTCTGACTCATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTGGCTTGTTAGGGCTTCCAGAACACAGGCTCTGACTCATGACA  400

seq1  GGACCACTTCATTTCTGTTCTGTGCTAGTCGACATATTTACACAAATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACTTCATTTCTGTTCTGTGCTAGTCGACATATTTACACAAATTGG  450

seq1  CTCCAGTCCAAGGCCACAACTATCTGAACAGTTAGCTTTACTAACTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCCAAGGCCACAACTATCTGAACAGTTAGCTTTACTAACTGATA  500

seq1  AGGAAATTCTGAACTATGGAACTTAATGTTCATTGGCAAGGCTCAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTCTGAACTATGGAACTTAATGTTCATTGGCAAGGCTCAGAAGG  550

seq1  AACAGGAAGGCTGGAGGGAGTGTTGGTGTCACATTATCCCACGTTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAGGCTGGAGGGAGTGTTGGTGTCACATTATCCCACGTTCTTTA  600

seq1  CATGATCCAACCACTGCCATTAAGAAAGGAGTAAACAGTGCAACCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCCAACCACTGCCATTAAGAAAGGAGTAAACAGTGCAACCCTCAT  650

seq1  TGACCATAAATGAAAGAATCTCAGAGAGCGTGTGACTCACCAAAAGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATAAATGAAAGAATCTCAGAGAGCGTGTGACTCACCAAAAGGACT  700

seq1  GGGTAGCAAGCACACAGCTTCCCCTGGAGGAAATGCTCTTTCCTTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCAAGCACACAGCTTCCCCTGGAGGAAATGCTCTTTCCTTATATA  750

seq1  AGCTAATCTTTAGGATCCAGGGATGGTCTGCTGCTGTTACAAAGCCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCTTTAGGATCCAGGGATGGTCTGCTGCTGTTACAAAGCCATAC  800

seq1  CCTGACTCATCACTGTCTGCTCAAACGGCTAAATGAAAGGGGAGTGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCATCACTGTCTGCTCAAACGGCTAAATGAAAGGGGAGTGACAG  850

seq1  TGGACAGTGACAAAGGGGACAGGAAGGCTGAGTGGGAGTGAGAAGGTCGA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGACAGTGACAAAGGGGACAGGAAGGCTGAGTGGGAGTGAG-AGGTCGA  899

seq1  CAATCCAGATCCTGGCAGCCACAGGGCTGCTTCCTATTCTTGCTCTGCCT  950
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  CAATCCAGATCCTGGCAGCCACAGGGCTGCTTCCTA-TCTTGCTCTG-CT  947

seq1  CTGAGCAAGATTGCAACTGGCAGCCTTTTTCCTCCATGCTCTGGCCTGTC  1000
      |||||| ||||||||||||||||||||||||   |||||||||| |||||
seq2  CTGAGC-AGATTGCAACTGGCAGCCTTTTTC--TCATGCTCTGG-CTGTC  993

seq1  TACAAAACCGGACAGGGAGGTTGTAATTATTTTGGCTGGGTCGATGAGAC  1050
      ||| |||||||||| ||||  ||| |||||||  ||| ||||||||||||
seq2  TAC-AAACCGGACA-GGAG--TGT-ATTATTT--GCT-GGTCGATGAGAC  1035

seq1  TGTTGTGTGAAGTGAATGAGCCTGTTAAATAGACCCATAAGCTGTGTCTA  1100
      ||||||||| |||| ||||  ||||   ||||| |||| |||||||||||
seq2  TGTTGTGTG-AGTG-ATGA--CTGT---ATAGA-CCAT-AGCTGTGTCTA  1076

seq1  CTAGCTGCACCATCTTAGGAGAGATCATCTAAATCCTGAATGCCTCTTGG  1150
      ||| |||| ||||||||||||| ||||||||||| ||||  ||||||  |
seq2  CTA-CTGC-CCATCTTAGGAGAAATCATCTAAAT-CTGATGGCCTCT--G  1121

seq1  CCCACCTCTGGTAATAACAATGCTT  1175
      ||  ||||||  |||||||||||||
seq2  CCACCCTCTG--AATAACAATGCTT  1144

seq1: chrY_573321_573356
seq2: B6Ng01-047M12.g_532_567

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAG  36
      ||||||||| ||||||||||||||||||||||||||
seq2  ATGGAGGAGTTAGAGAAAGTACCCAAGGAGCTAAAG  36