BAC Information

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BAC

Clone NameB6Ng01-048E04
Chromosome13 (Build37)
Map Location 64,878,872 - 64,994,600
singlet/doubletdoublet
Overlap geneCntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048E04.bB6Ng01-048E04.g
ACCDH872873DH872874
length982902
definitionDH872873|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E04, 5' end.DH872874|Mus musculus domesticus DNA, BAC clone: B6Ng01-048E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,878,872 - 64,879,870)(64,994,021 - 64,994,600)
sequence
gaattcactagaaaaggacagacatgcttaagaattcaataagtacacac
tttatgattcattatcatctccaccaaagaaaaattacagtttaagagac
tttaatggcctcttctaaaattttaccatgttgcacttctatccagagtt
tttaataaaatccttaattgtattacattcaagcttgagaaagcttggca
aatgattatttttccatctttctctgactgaaaggattgtaggaattaaa
tcccaagcaaaggaacaaactgttacaacatgcattcttttttattttat
tttatttttaccatgtactatacagcctttaaacctttctttccgtgtga
ggatttatttgcctatatgtatatatgtgagagtatgtgtgttcacatgt
gtgtgtatgtggaggctatagactgacttcaattttctttttaacagctc
cccactttagtttaattttgtattttgagacagggttttttttgtgtgtg
tgtgtgttgccctggctgtcctgaaacttgctttgtagaccaggctgaca
ttaaattaagagatccacctgcctctgcttcctgagtgctggcattaaag
gcatatgccaccacacccagccaatactttattttataagatcagatttc
tcactcaacctggagattccaatttgattagatttgttggccagcagccc
cagggatcctcttgtctctgtctccctagtactgacatttcagcagactg
ccatgtctctccttttatatggggctggtgatctcatgtattcatgtttg
ccaagcaagtactgtcccacctaagtcaccttgttctatatactatccta
ctagattactttgctatgctgacaaggtcactttgctgtactagtatttc
atatttgctgtgtctctgtgtctagtgtagatgatgtagtgctgagctgt
agctcagtgcacagcagtgtcatcatgtacaa
gaattctgtgagagagaaccaggagggtggcaaaatttggggtgtaaata
aataaaataaataataaaaatgtttaaggaggaaaaaaattaaaatactt
ttaaaataaatgttttaaaatgtgaaaaaagaaaaccagtcagtgtaatc
tatcatataaacaaactgaaagaaaaacaaacaaacaaaaacataaacac
atggttatcaagctgaaaaagcctttaacaaaatctaacactccttcaca
aaaattttataaagaccaggggtaccagggacatatctaaacaaaataaa
ggcaatttatagtaagcctatagccaacatcaaattaaatgaagagaaac
tcaaaccaattccaccaaaatccaaaacaggacaaggctgtcctccattt
tctctatatctatttaatatagtacttgaagttctagctagagcaataag
atgactgcaggagatcaaggagataaattggaagggaagaagtcaaagta
tcactatttgcagatgatatgttagtatacatatgcttcaagaattcaaa
cactgcttgaaatgaaagagagacaaactataacccctggtactcccttt
agtcttcctcagcaatttatagcatatcaacacttttccacatgtcttcg
atacttagagcatctcaagggatttcctgttatgatctagggagcagaca
ctcaataagtcaccttcatttttctcctttaccccagagctaccagttac
cacagcaagtccccttcagaaatgtcatttttcatctgttcttccctacc
ccgtgaatgagtgttttttctgttttcatttgtttgaaacatacttcagc
atttagcatgtgtacatgagatttgggtcttacatatgtatacaatactt
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64878872_64879870
seq2: B6Ng01-048E04.b_40_1021

seq1  GAATTCACTAGAAAAGGACAGACATGCTTAAGAATTCAATAAGTACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAAAAGGACAGACATGCTTAAGAATTCAATAAGTACACAC  50

seq1  TTTATGATTCATTATCATCTCCACCAAAGAAAAATTACAGTTTAAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATTCATTATCATCTCCACCAAAGAAAAATTACAGTTTAAGAGAC  100

seq1  TTTAATGGCCTCTTCTAAAATTTTACCATGTTGCACTTCTATCCAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGCCTCTTCTAAAATTTTACCATGTTGCACTTCTATCCAGAGTT  150

seq1  TTTAATAAAATCCTTAATTGTATTACATTCAAGCTTGAGAAAGCTTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAATCCTTAATTGTATTACATTCAAGCTTGAGAAAGCTTGGCA  200

seq1  AATGATTATTTTTCCATCTTTCTCTGACTGAAAGGATTGTAGGAATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATTTTTCCATCTTTCTCTGACTGAAAGGATTGTAGGAATTAAA  250

seq1  TCCCAAGCAAAGGAACAAACTGTTACAACATGCATTCTTTTTTATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCAAAGGAACAAACTGTTACAACATGCATTCTTTTTTATTTTAT  300

seq1  TTTATTTTTACCATGTACTATACAGCCTTTAAACCTTTCTTTCCGTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTACCATGTACTATACAGCCTTTAAACCTTTCTTTCCGTGTGA  350

seq1  GGATTTATTTGCCTATATGTATATATGTGAGAGTATGTGTGTTCACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATTTGCCTATATGTATATATGTGAGAGTATGTGTGTTCACATGT  400

seq1  GTGTGTATGTGGAGGCTATAGACTGACTTCAATTTTCTTTTTAACAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGGAGGCTATAGACTGACTTCAATTTTCTTTTTAACAGCTC  450

seq1  CCCACTTTAGTTTAATTTTGTATTTTGAGACAGGGTTTTTTTTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTAGTTTAATTTTGTATTTTGAGACAGGGTTTTTTTTGTGTGTG  500

seq1  TGTGTGTTGCCCTGGCTGTCCTGAAACTTGCTTTGTAGACCAGGCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTGCCCTGGCTGTCCTGAAACTTGCTTTGTAGACCAGGCTGACA  550

seq1  TTAAATTAAGAGATCCACCTGCCTCTGCTTCCTGAGTGCTGGCATTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAAGAGATCCACCTGCCTCTGCTTCCTGAGTGCTGGCATTAAAG  600

seq1  GCATATGCCACCACACCCAGCCAATACTTTATTTTATAAGATCAGATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCCACCACACCCAGCCAATACTTTATTTTATAAGATCAGATTTC  650

seq1  TCACTCAACCTGGAGATTCCAATTTGATTAGATTTGTTGGCCAGCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAACCTGGAGATTCCAATTTGATTAGATTTGTTGGCCAGCAGCCC  700

seq1  CAGGGATCCTCTTGTCTCTGTCTCCCTAGTACTGACATTTCAGGCAGACT  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGGGATCCTCTTGTCTCTGTCTCCCTAGTACTGACATTTCA-GCAGACT  749

seq1  GCCATGTCTCTCCTTTTATATGGGGCTGGTGATCTCATGTATTCATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTCTCTCCTTTTATATGGGGCTGGTGATCTCATGTATTCATGTTT  799

seq1  GCCAAGCAAGTACTGTCCCACCTAAGTCACCTTGTTCTATATACTATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCAAGTACTGTCCCACCTAAGTCACCTTGTTCTATATACTATCCT  849

seq1  ACTAGATTACTTTGCTATTGCTGACAAGGTTCACTTTTGCTGTACTTAGT  900
      ||||||||||||||||| ||||||||||| |||| |||||||||| ||||
seq2  ACTAGATTACTTTGCTA-TGCTGACAAGG-TCAC-TTTGCTGTAC-TAGT  895

seq1  ATTTCATATTTGCTTGTGTTCTCCTGTTGTCCTAGTGTTAGATGATGTTA  950
      ||||||||||||| |||| ||| ||| ||| |||||| ||||||||||  
seq2  ATTTCATATTTGC-TGTG-TCT-CTG-TGT-CTAGTG-TAGATGATGT--  937

seq1  AGTGCTGAGGCTGTAGCTCAGTGGCACAGCAGTTGTCAATCATGTACAA  999
      |||||||| ||||||||||||| ||||||||| |||| |||||||||||
seq2  AGTGCTGA-GCTGTAGCTCAGT-GCACAGCAG-TGTC-ATCATGTACAA  982

seq1: chr13_64994021_64994600
seq2: B6Ng01-048E04.g_67_646 (reverse)

seq1  TAGTTTGTCTCTCTTTCATTTCAAGCAGTGTTTGAATTCTTGAAGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTCTCTCTTTCATTTCAAGCAGTGTTTGAATTCTTGAAGCATAT  50

seq1  GTATACTAACATATCATCTGCAAATAGTGATACTTTGACTTCTTCCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTAACATATCATCTGCAAATAGTGATACTTTGACTTCTTCCCTTC  100

seq1  CAATTTATCTCCTTGATCTCCTGCAGTCATCTTATTGCTCTAGCTAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATCTCCTTGATCTCCTGCAGTCATCTTATTGCTCTAGCTAGAAC  150

seq1  TTCAAGTACTATATTAAATAGATATAGAGAAAATGGAGGACAGCCTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTACTATATTAAATAGATATAGAGAAAATGGAGGACAGCCTTGTC  200

seq1  CTGTTTTGGATTTTGGTGGAATTGGTTTGAGTTTCTCTTCATTTAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGGATTTTGGTGGAATTGGTTTGAGTTTCTCTTCATTTAATTTG  250

seq1  ATGTTGGCTATAGGCTTACTATAAATTGCCTTTATTTTGTTTAGATATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCTATAGGCTTACTATAAATTGCCTTTATTTTGTTTAGATATGT  300

seq1  CCCTGGTACCCCTGGTCTTTATAAAATTTTTGTGAAGGAGTGTTAGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTACCCCTGGTCTTTATAAAATTTTTGTGAAGGAGTGTTAGATTT  350

seq1  TGTTAAAGGCTTTTTCAGCTTGATAACCATGTGTTTATGTTTTTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGGCTTTTTCAGCTTGATAACCATGTGTTTATGTTTTTGTTTGT  400

seq1  TTGTTTTTCTTTCAGTTTGTTTATATGATAGATTACACTGACTGGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTTTCAGTTTGTTTATATGATAGATTACACTGACTGGTTTTC  450

seq1  TTTTTTCACATTTTAAAACATTTATTTTAAAAGTATTTTAATTTTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACATTTTAAAACATTTATTTTAAAAGTATTTTAATTTTTTTCC  500

seq1  TCCTTAAACATTTTTATTATTTATTTTATTTATTTACACCCCAAATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAACATTTTTATTATTTATTTTATTTATTTACACCCCAAATTTTG  550

seq1  CCACCCTCCTGGTTCTCTCTCACAGAATTC  580
      ||||||||||||||||||||||||||||||
seq2  CCACCCTCCTGGTTCTCTCTCACAGAATTC  580