BAC Information

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BAC

Clone NameB6Ng01-049H16
Chromosome13 (Build37)
Map Location 38,433,250 - 38,573,119
singlet/doubletdoublet
Overlap geneBmp6
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049H16.bB6Ng01-049H16.g
ACCDH873729DH873730
length793708
definitionDH873729|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H16, 5' end.DH873730|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,433,250 - 38,434,043)(38,572,410 - 38,573,119)
sequence
gaattctatagacagtttgggttctaggagtactaggtctgagtgcgtga
gacgagtgagactcaataaataacccatttgctatttgggttacagtgtg
gaaaaaaaaatctctggaaacagatttatatattagtttttcgctttgcc
acctaatgtcctccgagttggaaaatatgatgggccgagtgacattttga
agtgtgaatgcccaacttttttgaacacacagtgatgggatcccgtgagg
gactgtgcatgtgaccccagactttgggatgagacacatattttgaagtt
tgtcttacaggagtacctttcaccagcaatatttatttaacactctgatg
ttcatctctcgcactctgaaacatttacttaacaatattccttttcatta
aacccaaactggtatttttaaaatgtgagtgagtgagttattatattttg
gaattgatgtcaaactcctccgaccttgtgctcttcatgatgctgagagg
ataggattttatgagtggagtgtcccaaggactgaaggagggcccacctc
tggctttctttaacttctgccacatattaaaagacttcgatgttgaattt
tgaaagcaacaacttaaggctttgggccaagcatctgaatgggtctgact
gagtgctcacatcaaccagggggcttgtgggtttgttcttgctttgtttc
ggtttgggttttgttgacagaagatttatctccttagtcctggctgtcca
ggaacttggtccctgtaccaggatggcttcgaacttatggaat
gaattccctgcatcggttcttggctcgagcacctcaggctcgttcttcag
ggcctccattcccttctataaaaagcaaagtctaaaaatgttcgtagcac
aggctgaaaataccgagcgagtgctcaaataagtaagggatcaagaccca
gtatgtttaaagatcagagtacgctacacagaaaaaacagggcagcaatg
ggttgagaagggatgagtgggcctcacacaccatgtcagggggcctgaga
ggtgcatgcaaaaaggcacctggtatggctcattgtggtggaaccctgag
accttcccctattgctcccattcaaggaaacactgtgcttagtgtgatgg
tgtcacatacacctataaggtctgaaggggtccccaatgtgtccgggctg
agatggatcttcaaggagtgattacattgcaagggctccccctcatgaat
ggatggcatcctgacaccataaaaggtacttgatgataacatgggttccc
catctctctcttcgtgtgtgtatctttccttcctcccttcccaccccaac
gtgatgttcgagagggtcctcaccgtctatggttccttgatcttggtctg
cccatcctccattactgtgtactacgaaatctctggtctctggacaatac
caagctctggtattttgtatagtgaaacgaaatgagccgtgaatacctgt
atttacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38433250_38434043
seq2: B6Ng01-049H16.b_43_835

seq1  GAATTCTATAGACAGTTTGGGTTCTAGGAGTACAAGGTCTGAGTGCGTGA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCTATAGACAGTTTGGGTTCTAGGAGTACTAGGTCTGAGTGCGTGA  50

seq1  GACAAGTGAGACTCAATAAATAACAGATTTGCTATTTGGGTTACAGTGTG  100
      ||| ||||||||||||||||||||  ||||||||||||||||||||||||
seq2  GACGAGTGAGACTCAATAAATAACCCATTTGCTATTTGGGTTACAGTGTG  100

seq1  GAAAAAAAAATCTCTGGAAACAGATTTATATATTAGTTTTTCGCTTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATCTCTGGAAACAGATTTATATATTAGTTTTTCGCTTTGCC  150

seq1  ACCAGATGTCCTCCGAGTTGGAAAATATGATGGTCCGAGTGACATTTTGA  200
      |||  |||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTAATGTCCTCCGAGTTGGAAAATATGATGGGCCGAGTGACATTTTGA  200

seq1  AGTGTGAATGCCCAACATTTTTGAACAGACAGTGATGGGATAGTGTGAGG  250
      |||||||||||||||| |||||||||| |||||||||||||   ||||||
seq2  AGTGTGAATGCCCAACTTTTTTGAACACACAGTGATGGGATCCCGTGAGG  250

seq1  GACTGTGCATGTGACCGCAGACTTTGGGATGAGACACATATTTTGAAGTT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACTGTGCATGTGACCCCAGACTTTGGGATGAGACACATATTTTGAAGTT  300

seq1  TGTCTTACAGGTGTAGCTTTCAGAAGCAATATTTATTTAACACTCTGATG  350
      ||||||||||| ||| ||||||  ||||||||||||||||||||||||||
seq2  TGTCTTACAGGAGTACCTTTCACCAGCAATATTTATTTAACACTCTGATG  350

seq1  TTCATCTCTCGCACTCAGCAAACATTTACTTAACATAGTTCCTTTTCATT  400
      |||||||||||||||| | ||||||||||||||||   ||||||||||||
seq2  TTCATCTCTCGCACTCTG-AAACATTTACTTAACAATATTCCTTTTCATT  399

seq1  AAACCCAAACTGGTATTTTTAAAATGTGAGTGAGTGAGTTATTATATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAACTGGTATTTTTAAAATGTGAGTGAGTGAGTTATTATATTTT  449

seq1  GGAATTGATGTCAAACTCCTCCAACCTTGTGCTAATTATAATGCTGAGAG  500
      |||||||||||||||||||||| ||||||||||  | || ||||||||||
seq2  GGAATTGATGTCAAACTCCTCCGACCTTGTGCTCTTCATGATGCTGAGAG  499

seq1  TTTAGGATTTTATGAGTGGAGTGTCCCAAGGACTCGGGGAGGGCAGACCT  550
        ||||||||||||||||||||||||||||||||   |||||||  ||||
seq2  GATAGGATTTTATGAGTGGAGTGTCCCAAGGACTGAAGGAGGGCCCACCT  549

seq1  CAGGCTTTTAAGAACTACAGCCACATATTAGAGGACTTCTATGTTGAATT  600
      | ||||||    |||| | ||||||||||| | |||||| ||||||||||
seq2  CTGGCTTTCTTTAACTTCTGCCACATATTAAAAGACTTCGATGTTGAATT  599

seq1  TTGAAAGCAACAGCTTAAGGCTTTGGGCCAAGCAGTTGAATGGGTCTGAC  650
      |||||||||||| |||||||||||||||||||||  ||||||||||||||
seq2  TTGAAAGCAACAACTTAAGGCTTTGGGCCAAGCATCTGAATGGGTCTGAC  649

seq1  TGAATACAAAAATCAACGAGTGTACTTGTGGTTTTGTTTTTGCTTTGTTT  700
      ||| | |  | |||||| || |  ||||||| |||||| |||||||||||
seq2  TGAGTGCTCACATCAACCAGGGGGCTTGTGGGTTTGTTCTTGCTTTGTTT  699

seq1  CGGTTTGGGTTTTGTTGAGAGAAGATTTCTCTACGTAGTCCTGGCTGTCC  750
      |||||||||||||||||| ||||||||| ||| | |||||||||||||||
seq2  CGGTTTGGGTTTTGTTGACAGAAGATTTATCTCCTTAGTCCTGGCTGTCC  749

seq1  TGGAACTTGATCTGTAGACCAGGCTGGCTTCGAACTACTGGAAT  794
       |||||||| ||  |  |||||| ||||||||||||  ||||||
seq2  AGGAACTTGGTCCCTGTACCAGGATGGCTTCGAACTTATGGAAT  793

seq1: chr13_38572410_38573119
seq2: B6Ng01-049H16.g_68_775 (reverse)

seq1  GTGTAAATACATGTTTTCCTGGTTCATTTTGTTTCACTATAACAAAATAC  50
      ||||||||||| || |||  || |||||| |||||||||| |||||||||
seq2  GTGTAAATACAGGTATTCACGGCTCATTTCGTTTCACTAT-ACAAAATAC  49

seq1  CCGAGCCTGGTATTTTACAGAGAACAGAGATTTCTTAGAACACAGTTCTG  100
      | |||| ||||||| | |||||| |||||||||| ||| |||||||  ||
seq2  CAGAGCTTGGTATTGTCCAGAGACCAGAGATTTCGTAGTACACAGTAATG  99

seq1  GAGGATGGGCAGACCAAGATCAGGGAACCATAGCTGGTGAGGACCCTCTC  150
      |||||||||||||||||||||| ||||||||||  |||||||||||||||
seq2  GAGGATGGGCAGACCAAGATCAAGGAACCATAGACGGTGAGGACCCTCTC  149

seq1  CTACATCACCCTGGGGTGGGAAGGGAGGAAGGAAAGATACACACACGAAG  200
        |||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GAACATCACGTTGGGGTGGGAAGGGAGGAAGGAAAGATACACACACGAAG  199

seq1  AGAGAGATGGGGAACCTTATGTTCTCATCAAGAACCTTCTCTGGTGTCAG  250
      ||||||||||||||||  ||||| |||||||| ||||| | |||||||||
seq2  AGAGAGATGGGGAACC-CATGTTATCATCAAGTACCTTTTATGGTGTCAG  248

seq1  GATGCCATCCATTCATGAGGGGGAGCCCTTGCAATGTAATCACACCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  GATGCCATCCATTCATGAGGGGGAGCCCTTGCAATGTAATCACTCCTTGA  298

seq1  AGATCCATCTCAGCCCTGACACACTGGGGACCCCTTCAGACCTTATAGGT  350
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  AGATCCATCTCAGCCCGGACACATTGGGGACCCCTTCAGACCTTATAGGT  348

seq1  GTATGTGACACCATCACACTAAGCACAGTGTTTCCTTGAATGGGAGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGACACCATCACACTAAGCACAGTGTTTCCTTGAATGGGAGCAAT  398

seq1  AGGGGAAGGTCTCAGGGTTCCACCACAATGAGCCATACCAGGTGCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGGTCTCAGGGTTCCACCACAATGAGCCATACCAGGTGCCTTTT  448

seq1  TGCATGCACCTCTCAGGCACCCTGACCTGGTGTGTGAGGCCCACTCATCC  500
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TGCATGCACCTCTCAGGCCCCCTGACATGGTGTGTGAGGCCCACTCATCC  498

seq1  CTTCTCAACCCATTGCTGCCCTGTTTTCTCTGTGTAGCCTACTCTGATCT  550
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CTTCTCAACCCATTGCTGCCCTGTTTTTTCTGTGTAGCGTACTCTGATCT  548

seq1  TTAAACATACTGGGTCTTGATCCCTTACTTATTTGAGCACTCGCTCGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATACTGGGTCTTGATCCCTTACTTATTTGAGCACTCGCTCGGTA  598

seq1  TTTTCAGCCTGTGCTACGAACATTTTTAGACTTTGCTTTTTATAGATGGG  650
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTCAGCCTGTGCTACGAACATTTTTAGACTTTGCTTTTTATAGAAGGG  648

seq1  AATGGAGGCCGTGAAGAACGAGCCTCTGGTGCACGAGCCAAGAACCACTG  700
      |||||||||| ||||||||||||||  ||||| |||||||||||||  ||
seq2  AATGGAGGCCCTGAAGAACGAGCCTGAGGTGCTCGAGCCAAGAACCGATG  698

seq1  CAGGGAATTC  710
      ||||||||||
seq2  CAGGGAATTC  708