BAC Information

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BAC

Clone NameB6Ng01-049P21
Chromosome13 (Build37)
Map Location 50,257,035 - 50,258,046
singlet/doubletsinglet
Overlap genenone
Upstream geneNinj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085
Downstream geneLOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049P21.bB6Ng01-049P21.g
ACCDH874078DH874079
length1,010186
definitionDH874078|Mus musculus domesticus DNA, BAC clone: B6Ng01-049P21, 5' end.DH874079|Mus musculus domesticus DNA, BAC clone: B6Ng01-049P21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagaatatcctgctgtcccttgcattttgtgctaaggttttg
acactgaaaagcattacttaggattttcttctgagaggtcttagacatag
cctctcctttttctgttatccaagtcttggctgtatccttgagctctgtg
gtgctctgaatggaatgtcttactctcgcattcctttctccctgacttat
gcctgtagatcttagagtactctgcctcttttcatgaaagtgaaacccat
tgcgatccagcacttagttctgatcctttgcaacactgatctttagattc
caccatttcctgtctcttcgtttagacattagataagccctgggaactct
tggtgttttggcaactagcctggaagctgggcagagagtcctgtgaaggc
aggctgaccctggcatggttgactctactggggccaactggatggtgact
cacaggccaggctcttggctgctggtttgaactcaaaatattctcacttg
agtcctgcatgtgttgtgaggtaggtatttgtagatgggctgggagtttt
ttgacccataaagacccaaaaaccctgggactgatattgatgtccttgcc
attgtgactctcactggatcccagactcactctccatgcacgaggtggct
cttctttcacctccactgtagtttgtttggttctgaaggtcggacccttt
tctccgaggcctttccattgtcataaccctggggtgatgtcttaagtcca
cctcctgtaagctcttctgtgttgcatgcttggccattttgggattggta
cttggctttcagactgccttttccaatgtctccgatggtccttgatcttg
ttggggattttgctgccaggaagtaggagaagtctctgaacacttcagta
ttctctggaatggatctagatgagactttgtgccccgaggcttgcaacag
tggagggctctgttgggtctccgagctctgcattgaggttataactcatt
ccttctggcc
caggggtctgtaccaccaaccaaagaatacacatggagtgaaccatggct
ctggccacatatgtggcagaggatagccttgttggacatcagtgtaagga
gacgcccttggcctgagtgtgtttgataccccagtgtaggtaaatgccgg
gaagggaaagacgggagtgggtaggtgggtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50257035_50258046
seq2: B6Ng01-049P21.b_46_1055

seq1  GAATTCTTTAGAATATCCTGCTGTCCCTTGCATTTTGTGCTAAGGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAATATCCTGCTGTCCCTTGCATTTTGTGCTAAGGTTTTG  50

seq1  ACACTGAAAAGCATTACTTAGGATTTTCTTCTGAGAGGTCTTAGACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAAGCATTACTTAGGATTTTCTTCTGAGAGGTCTTAGACATAG  100

seq1  CCTCTCCTTTTTCTGTTATCCAAGTCTTGGCTGTATCCTTGAGCTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTTTTTCTGTTATCCAAGTCTTGGCTGTATCCTTGAGCTCTGTG  150

seq1  GTGCTCTGAATGGAATGTCTTACTCTCGCATTCCTTTCTCCCTGACTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGAATGGAATGTCTTACTCTCGCATTCCTTTCTCCCTGACTTAT  200

seq1  GCCTGTAGATCTTAGAGTACTCTGCCTCTTTTCATGAAAGTGAAACCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGATCTTAGAGTACTCTGCCTCTTTTCATGAAAGTGAAACCCAT  250

seq1  TGCGATCCAGCACTTAGTTCTGATCCTTTGCAACACTGATCTTTAGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATCCAGCACTTAGTTCTGATCCTTTGCAACACTGATCTTTAGATTC  300

seq1  CACCATTTCCTGTCTCTTCGTTTAGACATTAGATAAGCCCTGGGAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTCCTGTCTCTTCGTTTAGACATTAGATAAGCCCTGGGAACTCT  350

seq1  TGGTGTTTTGGCAACTAGCCTGGAAGCTGGGCAGAGAGTCCTGTGAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTTGGCAACTAGCCTGGAAGCTGGGCAGAGAGTCCTGTGAAGGC  400

seq1  AGGCTGACCCTGGCATGGTTGACTCTACTGGGGCCAACTGGATGGTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACCCTGGCATGGTTGACTCTACTGGGGCCAACTGGATGGTGACT  450

seq1  CACAGGCCAGGCTCTTGGCTGCTGGTTTGAACTCAAAATATTCTCACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCAGGCTCTTGGCTGCTGGTTTGAACTCAAAATATTCTCACTTG  500

seq1  AGTCCTGCATGTGTTGTGAGGTAGGTATTTGTAGATGGGCTGGGAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCATGTGTTGTGAGGTAGGTATTTGTAGATGGGCTGGGAGTTTT  550

seq1  TTGACCCATAAAGACCCAAAAACCCTGGGACTGATATTGATGTCCTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCATAAAGACCCAAAAACCCTGGGACTGATATTGATGTCCTTGCC  600

seq1  ATTGTGACTCTCACTGGATCCCAGACTCACTCTCCATGCACGAGGTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACTCTCACTGGATCCCAGACTCACTCTCCATGCACGAGGTGGCT  650

seq1  CTTCTTTCACCTCCACTGTAGTTTGTTTGGTTCTGAAGGTCGGACCC-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTCTTTCACCTCCACTGTAGTTTGTTTGGTTCTGAAGGTCGGACCCTTT  700

seq1  TCTCCGAGGCC-TTCCATTGTCATAACCCTGGGGTGATGTCTTAAGTCCA  748
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGAGGCCTTTCCATTGTCATAACCCTGGGGTGATGTCTTAAGTCCA  750

seq1  CCTCCTGTAAGCTCTTCTGTGTTGCATGCTTGGCCATTTTGGGATTGGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTAAGCTCTTCTGTGTTGCATGCTTGGCCATTTTGGGATTGGTA  800

seq1  CTTGGC-TTCAGACTGCCTTTTCCAATGCCTCCGATGGTCC-TGATC-TG  845
      |||||| ||||||||||||||||||||| |||||||||||| ||||| ||
seq2  CTTGGCTTTCAGACTGCCTTTTCCAATGTCTCCGATGGTCCTTGATCTTG  850

seq1  TTGGGGA-TTTGCTGCCAGGAAGTAGGAAGTAGGTCTCTGAACAC-TCAG  893
      ||||||| ||||||||||||||||||||   | |||||||||||| ||||
seq2  TTGGGGATTTTGCTGCCAGGAAGTAGGA--GAAGTCTCTGAACACTTCAG  898

seq1  GTATCTCGGAAATGGATCTAGATGAGACTTTGTGGCCCCGAGGCTGGCAG  943
         |||| | ||||||||||||||||||||||| ||||||||||| ||| 
seq2  TATTCTCTGGAATGGATCTAGATGAGACTTTGT-GCCCCGAGGCTTGCAA  947

seq1  CAAGTGGAGGGGCTCTG-TGGGTCTCCTGAGCCTCTGCAGTTGAGTGTAT  992
      | |||||| |||||||| ||||||||| ||| ||||||| |||||  |||
seq2  C-AGTGGA-GGGCTCTGTTGGGTCTCC-GAG-CTCTGCA-TTGAGGTTAT  992

seq1  AAACTCATCTCTCTCTGGCC  1012
       ||||||| ||  |||||||
seq2  -AACTCAT-TCCTTCTGGCC  1010