BAC Information

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BAC

Clone NameB6Ng01-050K10
Chromosome13 (Build37)
Map Location 97,857,661 - 98,004,608
singlet/doubletdoublet
Overlap geneEG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb
Upstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik
Downstream geneEnc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740, Rgnef, LOC667703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050K10.bB6Ng01-050K10.g
ACCDH874531DH874532
length1,111660
definitionDH874531|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K10, 5' end.DH874532|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,003,501 - 98,004,608)(97,857,661 - 97,858,318)
sequence
gaattcactctgtagaccaggctggccttgaactcagaaatctgcctgtc
tccgcctcccaagtgctgggattgaaggcatgtgccaccactgccctact
cagagtttagttcttaaccactgacctgcactgcctcctctatctttctg
tcactcacggtgcctgctttcctgccccctggagtgctaggttagcatcc
catttccttctatttttctgtctctgtctctctatctctgtgtgtgtctc
tgtctctctgtctctgtctctctctctctctctcacacacacacacacac
acacacacacacacacacacacacactggatttataggaagagaagacat
gacatgtttgatttactttgccctatgttgacagatctgataacagtgtg
acagacgagaagctggaatcaattgactaaaattatactttttttttttt
aaatccactttaccctttctccacagttagttaccagatcatgttttcat
tctggcacactgtacccagtagagattggtaccaactcacaagcaaaggc
ccgtcttcatcaaattgctctttcaaacttagtttagacagtttctcagc
tgcggactgaggcaccgtttcccctgctatgatcaagccccaagtagtaa
gagaaacatcttcccacttcgatgtctgcaacccaaaggcccaggggagc
tcatgtgtcctcttggaagaatcttgagagaaaatacaatagaaaacaaa
gggaagattttaaatttcttggctgaacccagcaattgtgacattatgtt
ttaaatccaacgtacacagactatgcaaatgtttgaaagccttatattgg
acaatggcttacagatgtgaaggacttgtcagtggggtaggcacaggtcc
cagagcacaatgcgttccactccttgaagatgcaggtgttctagaagcca
acccactagaggagttgttcccacactatccttttagaggatccagtccc
tattgagactttcttcaaaaagctaaatgaatgtctaccgaacaatgaat
ccccaaatagtctcctcggctggagaattattatgagagggcaaggccac
cccggtacaaa
gaattctttcacctcagatatgtttgtaccttgatttgggcttctcagaa
gcccccaatcagtagcagaagcctgtggaaatcctgtaataattctggaa
cgaatatgagatacacttctcagtttttatggtacggttgactggcagtc
agcaacagtaagtagagggaaaattacactgatagatctttttcctgctc
tactttttcatattgcctaagaaccttcattctgtcgtgtagttttataa
atctaggggatggccggccatggtggcacacacctttaatcccagtactc
gagaggcagaggcaggtgggtctctgagtttgaggagagcctggactaca
gaatcgaatccagaacagccagggctccacagagaaaaaccctgtttcat
aaaaaaaataaataaaaagaaaaaaaaatccaagagaagggtgaagttac
tgccaggcagagatagagcatcttgggctggccttgggattcttttgtga
gaggtctgcttatgtttctgtacagcttggccaagattctccagcttaac
atttaatttatgaattaattttggacaattttttacacttcattgcccat
ttctatgtccggctttgatgagctagttggcttacggccccatatagctt
tctcagtcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_98003501_98004608
seq2: B6Ng01-050K10.b_45_1155 (reverse)

seq1  TTTGTACCGGTGTTGCCCTGCCC-CTCATAACTAATTCTCCAGCCTGAGA  49
      |||||||||| || ||| ||||| ||||||| |||||||||||||   ||
seq2  TTTGTACCGGGGTGGCCTTGCCCTCTCATAA-TAATTCTCCAGCCGAGGA  49

seq1  GACTATCTGTGGATTCATTGCTCAGGTAGACA-TCATTT-GCTTTTTGAA  97
      |||||| || |||||||||| || |||||||| |||||| ||||||||||
seq2  GACTATTTGGGGATTCATTGTTC-GGTAGACATTCATTTAGCTTTTTGAA  98

seq1  GGAAGCTCCAATAGGGACTGGATCCTCTAAAAGGATAGTGTGGGAACAAC  147
      | |||   ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTCAATAGGGACTGGATCCTCTAAAAGGATAGTGTGGGAACAAC  148

seq1  TCCTCTAGTGGGTTGGCTTCTAGACAACCTGCATCTTCAAGGAGTGGAAC  197
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TCCTCTAGTGGGTTGGCTTCTAGAACACCTGCATCTTCAAGGAGTGGAAC  198

seq1  GCATTGTGCTCTGGGGACCTGTGCCTA-CCCACTGACAAGTCCTTCACAT  246
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  GCATTGTGCTCT-GGGACCTGTGCCTACCCCACTGACAAGTCCTTCACAT  247

seq1  CTGTAAGCCATTGTCCAATATAAGGCTTTCAAACATTTGCATAGTCTGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGCCATTGTCCAATATAAGGCTTTCAAACATTTGCATAGTCTGTG  297

seq1  TACGTTGGATTTAAAACATAATGTCACAATTGCTGGGTTCAGCCAAG-AA  345
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACGTTGGATTTAAAACATAATGTCACAATTGCTGGGTTCAGCCAAGAAA  347

seq1  GTTAAAATCTT-CCTTTGTTTTCTATTGTATTTTCTCTCAAGATTCTTCC  394
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCTTCCCTTTGTTTTCTATTGTATTTTCTCTCAAGATTCTTCC  397

seq1  AAGAGGACACATGAGCTCCCCTGGGCCTTTGGGTTGCAGACATCGAAGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACACATGAGCTCCCCTGGGCCTTTGGGTTGCAGACATCGAAGTG  447

seq1  GGAAGATGTTTCTCTTACTACTTGGGGCTTGATCATAGCAGGGGAAACGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGTTTCTCTTACTACTTGGGGCTTGATCATAGCAGGGGAAACGG  497

seq1  TGCCTCAGTCCGCAGCTGAGAAACTGTCTAAACTAAGTTTGAAAGAGCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGTCCGCAGCTGAGAAACTGTCTAAACTAAGTTTGAAAGAGCAA  547

seq1  TTTGATGAAGACGGGCCTTTGCTTGTGAGTTGGTACCAATCTCTACTGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAAGACGGGCCTTTGCTTGTGAGTTGGTACCAATCTCTACTGGG  597

seq1  TACAGTGTGCCAGAATGAAAACATGATCTGGTAACTAACTGTGGAGAAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTGCCAGAATGAAAACATGATCTGGTAACTAACTGTGGAGAAAG  647

seq1  GGTAAAGTGGATTTAAAAAAAAAAAAGTATAATTTTAGTCAATTGATTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTGGATTTAAAAAAAAAAAAGTATAATTTTAGTCAATTGATTCC  697

seq1  AGCTTCTCGTCTGTCACACTGTTATCAGATCTGTCAACATAGGGCAAAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCGTCTGTCACACTGTTATCAGATCTGTCAACATAGGGCAAAGT  747

seq1  AAATCAAACATGTCATGTCTTCTCTTCCTATAAATCCAGTGTGTGTGTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACATGTCATGTCTTCTCTTCCTATAAATCCAGTGTGTGTGTGT  797

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGACA  847

seq1  GAGACAGAGAGACAGAGACACACACAGAGATAGAGAGACAGAGACAGAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGACAGAGACACACACAGAGATAGAGAGACAGAGACAGAAA  897

seq1  AATAGAAGGAAATGGGATGCTAACCTAGCACTCCAGGGGGCAGGAAAGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGGAAATGGGATGCTAACCTAGCACTCCAGGGGGCAGGAAAGCA  947

seq1  GGCACCGTGAGTGACAGAAAGATAGAGGAGGCAGTGCAGGTCAGTGGTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCGTGAGTGACAGAAAGATAGAGGAGGCAGTGCAGGTCAGTGGTTA  997

seq1  AGAACTAAACTCTGAGTAGGGCAGTGGTGGCACATGCCTTCAATCCCAGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAACTCTGAGTAGGGCAGTGGTGGCACATGCCTTCAATCCCAGC  1047

seq1  ACTTGGGAGGCGGAGACAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCGGAGACAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTC  1097

seq1  TACAGAGTGAATTC  1108
      ||||||||||||||
seq2  TACAGAGTGAATTC  1111

seq1: chr13_97857661_97858318
seq2: B6Ng01-050K10.g_69_728

seq1  GAATTCTTTCACCTCAGATATGTTTGTACCTTGATTTGGGCTTCTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACCTCAGATATGTTTGTACCTTGATTTGGGCTTCTCAGAA  50

seq1  GCCCCCAATCAGTAGCAGAAGCCTGTGGAAATCCTGTAATAATTCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAATCAGTAGCAGAAGCCTGTGGAAATCCTGTAATAATTCTGGAA  100

seq1  CGAATATGAGATACACTTCTCAGTTTTTATGGTACGGTTGACTGGCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATATGAGATACACTTCTCAGTTTTTATGGTACGGTTGACTGGCAGTC  150

seq1  AGCAACAGTAAGTAGAGGGAAAATTACACTGATAGATCTTTTTCCTGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTAAGTAGAGGGAAAATTACACTGATAGATCTTTTTCCTGCTC  200

seq1  TACTTTTTCATATTGCCTAAGAACCTTCATTCTGTCGTGTAGTTTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCATATTGCCTAAGAACCTTCATTCTGTCGTGTAGTTTTATAA  250

seq1  ATCTAGGGGATGGCCGGCCATGGTGGCACACACCTTTAATCCCAGTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGGGATGGCCGGCCATGGTGGCACACACCTTTAATCCCAGTACTC  300

seq1  GAGAGGCAGAGGCAGGTGGGTCTCTGAGTTTGAGGAGAGCCTGGACTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGAGGCAGGTGGGTCTCTGAGTTTGAGGAGAGCCTGGACTACA  350

seq1  GAATCGAATCCAGAACAGCCAGGGCTCCACAGAGAAAAACCCTGTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAATCGAATCCAGAACAGCCAGGGCTCCACAGAGAAAAACCCTGTTTCAT  400

seq1  AAAAAAAATAAATAAAAAGAAAAAAAAATCCAAGAGAAGGGTGAAGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAAATAAAAAGAAAAAAAAATCCAAGAGAAGGGTGAAGTTAC  450

seq1  TGCCAGGCAGAGATAGAGCATCTTGGGCTGGCCTTGGGATTCTTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCAGAGATAGAGCATCTTGGGCTGGCCTTGGGATTCTTTTGTGA  500

seq1  GAGGTCTGCTTATGTTTCTGTACAGCTTGGCCAAGATTCTCCAGCTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGCTTATGTTTCTGTACAGCTTGGCCAAGATTCTCCAGCTTAAC  550

seq1  ATTTAATTTATGAATTAA-TTTGGACAA-TTTTTACACTTCATTGCCCA-  597
      |||||||||||||||||| ||||||||| |||||||||||||||||||| 
seq2  ATTTAATTTATGAATTAATTTTGGACAATTTTTTACACTTCATTGCCCAT  600

seq1  TTCTATGTCCGGCTTTTGATGAGCTAGTTGGCTTACGGCCCCATTAAGCT  647
      ||||||||||||| ||||||||||||||||||||||||||||||  ||||
seq2  TTCTATGTCCGGC-TTTGATGAGCTAGTTGGCTTACGGCCCCATATAGCT  649

seq1  TTCTCAGTCAT  658
      |||||||||||
seq2  TTCTCAGTCAT  660