BAC Information

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BAC

Clone NameB6Ng01-050K19
Chromosome13 (Build37)
Map Location 48,588,195 - 48,714,206
singlet/doubletdoublet
Overlap geneZfp169, A830005F24Rik, AW456874
Upstream gene4931429P17Rik, Id4, LOC667351
Downstream geneBarx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050K19.bB6Ng01-050K19.g
ACCDH874549DH874550
length971395
definitionDH874549|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K19, 5' end.DH874550|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,713,199 - 48,714,206)(48,588,195 - 48,588,589)
sequence
gaattctgtttgacaacctgacatctagtgcgagtgagcgtttgggctgg
gcctggcctgttgggcctagtacaagagcacagtctaaaccactgaccac
ttgcaggttttaatctccacccttattatcatccttggatgtatatgtgc
taagtgtatcaaccttttctccactcacactttcatgctagaaaccaaat
gcagggcctggcacctattagacaagtactgtttcagtgagctgtacccc
agccattaagtatttttaacccgttgtaagaatgggtggtgttttggtta
tctgcagatatctgagccaccatgagcttttgaagaaaggtgactaaact
aattttcaaaaactagttcaatcatcttaataaaataataaaacataaag
aaattatgtagagtaaaatgtagaaacgtaagtggggaaagcttttcttt
cctcctcctcctcttcctcctccttttttttttttttttaattccagggg
tgtttgttgagcacaagtgttgagcacagggtagcatcagactgccccat
ttccatagtaatccacaggcctggtcacaagctacaagttgttgcttcca
tctgtgtgaattattaacctaaatttaaaaggagaatttgcttttttaaa
cattaactttgtatcaaagttgtgacttaaaggaatacaaaagttaatga
gcacgtgaaaaactcaacctaatggctgtcctgttagctttgaacttgtc
tgacatgttaagcagtcagcacccatctcgagagtaaaggtacgtgggct
tgatgaatctatacagtcatctcatactgtcttgcatagtgggtcagctg
cagctaggtacatgactagagtagccaggactgcaaaccctgcagcagag
ctaatcagaaaatgactactgcattctactttgggcttcagaagacattc
tgcttcagcccagctgtggcc
gaattcctcactatgttaggaccacctccaccctactggtactgccgctc
tccttctgaagaacagatttttggtaccaacaaagtagatgttttggtca
cgtgaaaaaacgtgacagttgcttcagaactggagagttgtgatatacac
gctaaaaagggcctagattgtcatgaaagggagtgttggtaggaaacatg
caaaacaagtttctgagctgtactccagtttttgtggaagagtatcgctc
atgcacggtgaaatgcttagctgagatttcttaagcaaaccagcacagtt
gcagctcaactgaccttaccacttgaaaatgcaagaagttcactgaatgg
ttaaggaaacttctcggcttatgccggggcggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48713199_48714206
seq2: B6Ng01-050K19.b_45_1015 (reverse)

seq1  GGCCACAGCTGGGGCTGGAAAGGCAGGAAATGTCTTCTGGGAGCCCCAAA  50
      |||||||||| ||||||   | ||||  ||||||||||  ||  ||||||
seq2  GGCCACAGCT-GGGCTG---AAGCAG--AATGTCTTCT--GAAGCCCAAA  42

seq1  GCTAGGAAATGCCAGGTAGGGCCATTTTTCTTGATTTACTCTGGCTGCAG  100
      | |||  |||||   |||  | ||||||   |||||  |||| |||||||
seq2  G-TAG--AATGC--AGTA--GTCATTTT--CTGATTAGCTCT-GCTGCAG  82

seq1  GGTTTGGCCAGGTCCTGTGCTACCTCCTTAGTCATGGTACCTAGCCTGAG  150
      ||||||  || |||||| |||| |||  ||||||| |||||||| |||  
seq2  GGTTTG--CA-GTCCTG-GCTA-CTC--TAGTCAT-GTACCTAG-CTGCA  123

seq1  GCTGGACCCACTTATGCCAAAGGCAGTATGGAGATGACCTGTATAGATTC  200
      ||| ||||||| |||||  ||| |||||| ||||||| ||||||||||||
seq2  GCT-GACCCAC-TATGC--AAGACAGTAT-GAGATGA-CTGTATAGATTC  167

seq1  ATCAAGCCCCACCTACCTTTACTCTCCAGATGGGTGCTGACTGCTTAAAC  250
      |||||| ||||| ||||||||||||| ||||||||||||||||||| |||
seq2  ATCAAG-CCCACGTACCTTTACTCTCGAGATGGGTGCTGACTGCTT-AAC  215

seq1  ATGTCAGACAAAGTTCAAAGCTAACAGGACAGCCATTAGGTTTGAGTTTT  300
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  ATGTCAGAC-AAGTTCAAAGCTAACAGGACAGCCATTAGG-TTGAGTTTT  263

seq1  TCACCTGCTCATTTAACTTTTGTATTCC-TTAAGTCACAACTTTGATACA  349
      |||| |||||| |||||||||||||||| |||||||||||||||||||||
seq2  TCACGTGCTCA-TTAACTTTTGTATTCCTTTAAGTCACAACTTTGATACA  312

seq1  AAGTTAATGTTTAAAAAAGCAAATTCTCCTTTTAAATTTAGGTTAATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATGTTTAAAAAAGCAAATTCTCCTTTTAAATTTAGGTTAATAAT  362

seq1  TCACACAGATGGAAGCAACAACTTGTAGCTTGTGACCAGGCCTGTGGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGATGGAAGCAACAACTTGTAGCTTGTGACCAGGCCTGTGGATT  412

seq1  ACTATGGAAATGGGGCAGTCTGATGCTACCCTGTGCTCAACACTTGTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAAATGGGGCAGTCTGATGCTACCCTGTGCTCAACACTTGTGCT  462

seq1  CAACAAACACCCCTGGAATTAAAAAAAAAAAAAAAAGGAGGAGGAAGAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACACCCCTGGAATTAAAAAAAAAAAAAAAAGGAGGAGGAAGAGG  512

seq1  AGGAGGAGGAAAGAAAAGCTTTCCCCACTTACGTTTCTACATTTTACTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGAAAGAAAAGCTTTCCCCACTTACGTTTCTACATTTTACTCT  562

seq1  ACATAATTTCTTTATGTTTTATTATTTTATTAAGATGATTGAACTAGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTTCTTTATGTTTTATTATTTTATTAAGATGATTGAACTAGTTT  612

seq1  TTGAAAATTAGTTTAGTCACCTTTCTTCAAAAGCTCATGGTGGCTCAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTAGTTTAGTCACCTTTCTTCAAAAGCTCATGGTGGCTCAGAT  662

seq1  ATCTGCAGATAACCAAAACACCACCCATTCTTACAACGGGTTAAAAATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGATAACCAAAACACCACCCATTCTTACAACGGGTTAAAAATAC  712

seq1  TTAATGGCTGGGGTACAGCTCACTGAAACAGTACTTGTCTAATAGGTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCTGGGGTACAGCTCACTGAAACAGTACTTGTCTAATAGGTGCC  762

seq1  AGGCCCTGCATTTGGTTTCTAGCATGAAAGTGTGAGTGGAGAAAAGGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGCATTTGGTTTCTAGCATGAAAGTGTGAGTGGAGAAAAGGTTG  812

seq1  ATACACTTAGCACATATACATCCAAGGATGATAATAAGGGTGGAGATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTAGCACATATACATCCAAGGATGATAATAAGGGTGGAGATTAA  862

seq1  AACCTGCAAGTGGTCAGTGGTTTAGACTGTGCTCTTGTACTAGGCCCAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCAAGTGGTCAGTGGTTTAGACTGTGCTCTTGTACTAGGCCCAAC  912

seq1  AGGCCAGGCCCAGCCCAAACGCTCACTCGCACTAGATGTCAGGTTGTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGCCCAGCCCAAACGCTCACTCGCACTAGATGTCAGGTTGTCAA  962

seq1  ACAGAATTC  1008
      |||||||||
seq2  ACAGAATTC  971

seq1: chr13_48588195_48588589
seq2: B6Ng01-050K19.g_64_458

seq1  GAATTCCTCACTATGTTAGGACCACCTCCACCCTACTGGTACTGCCGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTATGTTAGGACCACCTCCACCCTACTGGTACTGCCGCTC  50

seq1  TCCTTCTGAAGAACAGATTTTTGGTACCAACAAAGTAGATGTTTTGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGAAGAACAGATTTTTGGTACCAACAAAGTAGATGTTTTGGTCA  100

seq1  CGTGAAAAAACGTGACAGTTGCTTCAGAACTGGAGAGTTGTGATATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAAAAACGTGACAGTTGCTTCAGAACTGGAGAGTTGTGATATACAC  150

seq1  GCTAAAAAGGGCCTAGATTGTCATGAAAGGGAGTGTTGGTAGGAAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAGGGCCTAGATTGTCATGAAAGGGAGTGTTGGTAGGAAACATG  200

seq1  CAAAACAAGTTTCTGAGCTGTACTCCAGTTTTTGTGGAAGAGTATCGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAGTTTCTGAGCTGTACTCCAGTTTTTGTGGAAGAGTATCGCTC  250

seq1  ATGCACGGTGAAATGCTTAGCTGAGATTTCTTAAGCAAACCAGCACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGGTGAAATGCTTAGCTGAGATTTCTTAAGCAAACCAGCACAGTT  300

seq1  GCAGCTCAACTGACCTTACCACTTGAAAATGCAAGAAGTTCACTGAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCAACTGACCTTACCACTTGAAAATGCAAGAAGTTCACTGAATGG  350

seq1  TTAAGGAAACTTCTCGGCTTATGCCGGGGCGGGGGGGGGGGGGGG  395
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAACTTCTCGGCTTATGCCGGGGCGGGGGGGGGGGGGGG  395