BAC Information

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BAC

Clone NameB6Ng01-051K08
Chromosome13 (Build37)
Map Location 43,973,831 - 44,111,357
singlet/doubletdoublet
Overlap geneLOC100039432
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83
Downstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051K08.bB6Ng01-051K08.g
ACCDH875224DH875225
length228409
definitionDH875224|Mus musculus domesticus DNA, BAC clone: B6Ng01-051K08, 5' end.DH875225|Mus musculus domesticus DNA, BAC clone: B6Ng01-051K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,973,831 - 43,974,058)(44,110,942 - 44,111,357)
sequence
tccagataatctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgttcacactgatattattggtcctatgtgaatcttgggactatctc
ctctgactttattccctacccacatgccaatcttcccttgaaacaccctc
acatacacatcagaaaataatgttccactggttgccattgcattcttcat
tctatcaagtgtactctactaatgcacc
ttttccaaatcacctgtgcttaattgagtcatttttctctaagattatac
agttgacagtttaaacttaattaatctagtgtgtgtgtgtgtgtgtgtga
gagagagagagagagacagacagacagacagacagacagacagacagagg
gacagagacggagagaccaacagagacagggtcttagagagacagaggga
gagatatgtgtttcccagcacaggtgtaggtgcccagaagataaatgtag
accgggttcttcttccatttttacacgtgttccagggactgcgtccaggt
ttgcatggcaagcccctttgccagctgagccgcgtcactggctgggtagc
aaacatctcacaggaagtatcctatcaagaaaggagcaagtggaaaatgt
tctatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_43973831_43974058
seq2: B6Ng01-051K08.b_52_279

seq1  TCCAGATAATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATAATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTTCACACTGAGATGAATGGTCCTATGTGAATCTTGGGACTATCTC  100
      ||||||||||||||| || | |||||||||||||||||||||||||||||
seq2  GTGTGTTCACACTGATATTATTGGTCCTATGTGAATCTTGGGACTATCTC  100

seq1  CTCTGCCTTCATTCCCTACCCACATGCCAATCTTCTCTGGAAACACCCTC  150
      ||||| ||| ||||||||||||||||||||||||| || |||||||||||
seq2  CTCTGACTTTATTCCCTACCCACATGCCAATCTTCCCTTGAAACACCCTC  150

seq1  ACAGACACACCAGGAAATAATGTTCCACTGGTTGCCAGGGCATTCTTCAG  200
      ||| ||||| ||| |||||||||||||||||||||||  |||||||||| 
seq2  ACATACACATCAGAAAATAATGTTCCACTGGTTGCCATTGCATTCTTCAT  200

seq1  TCCAGCAAGTGTACACTACAAATGCACC  228
      || | ||||||||| |||| ||||||||
seq2  TCTATCAAGTGTACTCTACTAATGCACC  228

seq1: chr13_44110942_44111357
seq2: B6Ng01-051K08.g_63_477 (reverse)

seq1  TTTCATTGAACATTTTCAACTTGCTCCTTTCACTGATAGGCTACTTCCTG  50
      |||||| |||||||||| |||||||||||||  ||||||| |||||||||
seq2  TTTCATAGAACATTTTCCACTTGCTCCTTTC-TTGATAGGATACTTCCTG  49

seq1  TGAGATGTTTGCTACCCAGCCAGTGACGCGGCTCAGCTGGCAAAGGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTTTGCTACCCAGCCAGTGACGCGGCTCAGCTGGCAAAGGGGCT  99

seq1  TGCCATGCAAACCTGGACGCAGTCCCTGGAACACGTGTAAAAATGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCAAACCTGGACGCAGTCCCTGGAACACGTGTAAAAATGGAAGA  149

seq1  AGAACCCGGTCTACATTTATCTTCTGGGCACCTACACCTGTGCTGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCGGTCTACATTTATCTTCTGGGCACCTACACCTGTGCTGGGAAA  199

seq1  CACATATCTCTCCCTCTGTCTCTCTAAGACCCTGTCTCTGTTGGTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCTCTCCCTCTGTCTCTCTAAGACCCTGTCTCTGTTGGTCTCTC  249

seq1  CGTCTCTGTCCCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTGTCCCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTC  299

seq1  TCTCTCTCTCTCACACACACACACACACACACTAGATTAATTAAGTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCACACACACACACACACACACTAGATTAATTAAGTTTAA  349

seq1  ACTGTCAACTGTATAATCTTAGAGAAAAATGACTCAATTAAGCACAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAACTGTATAATCTTAGAGAAAAATGACTCAATTAAGCACAGGTG  399

seq1  ATTTGGAAAAGAATTC  416
      ||||||||||||||||
seq2  ATTTGGAAAAGAATTC  415